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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235859 (111 seq.)
>W1710944391
LOQS01000019
Actinomycetota
Corynebacterium glutamicum [LOQS]
235973
236046
+
Thr
GGT
[ENA]
¡û
>W1710944392
LOQS01000019
Actinomycetota
Corynebacterium glutamicum [LOQS]
236298
236371
+
Thr
GGT
[ENA]
¡û
>W1710944444
LOQT01000019
Actinomycetota
Corynebacterium glutamicum [LOQT]
15566
15639
+
Thr
GGT
[ENA]
¡û
>W1710944445
LOQT01000019
Actinomycetota
Corynebacterium glutamicum [LOQT]
15891
15964
+
Thr
GGT
[ENA]
¡û
>W1710944503
LOQV01000018
Actinomycetota
Corynebacterium glutamicum [LOQV]
248899
248826
-
Thr
GGT
[ENA]
¡û
>W1710944504
LOQV01000018
Actinomycetota
Corynebacterium glutamicum [LOQV]
248574
248501
-
Thr
GGT
[ENA]
¡û
>W1710944551
LOQW01000009
Actinomycetota
Corynebacterium glutamicum [LOQW]
230997
230924
-
Thr
GGT
[ENA]
¡û
>W1710944552
LOQW01000009
Actinomycetota
Corynebacterium glutamicum [LOQW]
230672
230599
-
Thr
GGT
[ENA]
¡û
>W1710944630
LOQX01000022
Actinomycetota
Corynebacterium glutamicum [LOQX]
63659
63732
+
Thr
GGT
[ENA]
¡û
>W1710944631
LOQX01000022
Actinomycetota
Corynebacterium glutamicum [LOQX]
63984
64057
+
Thr
GGT
[ENA]
¡û
>W131159268
AQUX01000002
Actinomycetota
Corynebacterium doosanense DSM 45436 [AQUX]
251580
251507
-
Thr
GGT
[ENA]
¡û
>W131164514
ARAV01000007
Actinomycetota
Corynebacterium lubricantis DSM 45231 [ARAV]
153319
153246
-
Thr
GGT
[ENA]
¡û
>W131169231
AREP01000003
Actinomycetota
Corynebacterium pilosum DSM 20521 [AREP]
103641
103714
+
Thr
GGT
[ENA]
¡û
>C171074391
CP018175
Actinomycetota
Corynebacterium glutamicum XV [CP018175]
600097
600170
+
Thr
GGT
-
¡û
>C171074392
CP018175
Actinomycetota
Corynebacterium glutamicum XV [CP018175]
600424
600497
+
Thr
GGT
-
¡û
>C171111107
CP020658
Actinomycetota
Corynebacterium glutamicum TQ2223 [CP020658]
2238193
2238120
-
Thr
GGT
-
¡û
>C171111108
CP020658
Actinomycetota
Corynebacterium glutamicum TQ2223 [CP020658]
2237868
2237795
-
Thr
GGT
-
¡û
>W131156421
AQPS01000037
Actinomycetota
Corynebacterium glutamicum MT [AQPS]
156649
156576
-
Thr
GGT
[ENA]
¡û
>W131156422
AQPS01000037
Actinomycetota
Corynebacterium glutamicum MT [AQPS]
156324
156251
-
Thr
GGT
[ENA]
¡û
>W131160882
AQXB01000008
Actinomycetota
Corynebacterium mastitidis DSM 44356 [AQXB]
106606
106679
+
Thr
GGT
[ENA]
¡û
>W131165336
ARBM01000003
Actinomycetota
Corynebacterium caspium DSM 44850 [ARBM]
115005
115078
+
Thr
GGT
[ENA]
¡û
>W131204420
ATBY01000017
Actinomycetota
Corynebacterium pyruviciproducens ATCC BAA-1742 [ATBY]
315928
315855
-
Thr
GGT
[ENA]
¡û
>W131215713
ATVF01000010
Actinomycetota
Corynebacterium callunae DSM 20147 [ATVF]
102575
102648
+
Thr
GGT
[ENA]
¡û
>W131215714
ATVF01000010
Actinomycetota
Corynebacterium callunae DSM 20147 [ATVF]
102889
102962
+
Thr
GGT
[ENA]
¡û
>C005668
BA000036
Actinomycetota
Corynebacterium glutamicum ATCC 13032 [BA000036]
495904
495976
+
Thr
GGT
[Ensembl]
¡û
>C005669
BA000036
Actinomycetota
Corynebacterium glutamicum ATCC 13032 [BA000036]
496229
496301
+
Thr
GGT
[Ensembl]
¡û
>C005728
BX927147
Actinomycetota
Corynebacterium glutamicum [BX927147]
495903
495975
+
Thr
GGT
[Ensembl]
¡û
>C005729
BX927147
Actinomycetota
Corynebacterium glutamicum [BX927147]
496228
496300
+
Thr
GGT
[Ensembl]
¡û
>C005788
AP009044
Actinomycetota
Corynebacterium glutamicum R [AP009044]
636351
636423
+
Thr
GGT
[Ensembl]
¡û
>C005789
AP009044
Actinomycetota
Corynebacterium glutamicum R [AP009044]
636676
636748
+
Thr
GGT
[Ensembl]
¡û
>W141026577
AKXP01000012
Actinomycetota
Corynebacterium glutamicum Z188 [AKXP]
14432
14505
+
Thr
GGT
[ENA]
¡û
>W141026578
AKXP01000012
Actinomycetota
Corynebacterium glutamicum Z188 [AKXP]
14757
14830
+
Thr
GGT
[ENA]
¡û
>WENV180504699
OCAN01035768
[OCAN] human gut metagenome; faeces
75
2
-
Thr
GGT
[ENA]
¢þ
>WENV182644114
OJLW01008449
[OJLW] metagenome; surface
1802
1729
-
Thr
GGT
[ENA]
¢þ
>WENV182645493
OJLY01030846
[OJLY] metagenome; surface
278
205
-
Thr
GGT
[ENA]
¢þ
>WENV182646378
OJMA01006105
[OJMA] metagenome; surface
983
910
-
Thr
GGT
[ENA]
¢þ
>C181001595
AP017369
Actinomycetota
Corynebacterium suranareeae N24 [AP017369]
663222
663295
+
Thr
GGT
-
¡û
>C181001596
AP017369
Actinomycetota
Corynebacterium suranareeae N24 [AP017369]
663507
663580
+
Thr
GGT
-
¡û
>C181002209
AP017557
Actinomycetota
Corynebacterium glutamicum AJ1511 [AP017557]
596925
596998
+
Thr
GGT
-
¡û
>C181002210
AP017557
Actinomycetota
Corynebacterium glutamicum AJ1511 [AP017557]
597252
597325
+
Thr
GGT
-
¡û
>C181029618
CP017995
Actinomycetota
Corynebacterium glutamicum C1 [CP017995]
494226
494299
+
Thr
GGT
-
¡û
>C181029619
CP017995
Actinomycetota
Corynebacterium glutamicum C1 [CP017995]
494551
494624
+
Thr
GGT
-
¡û
>C181064147
CP022394
Actinomycetota
Corynebacterium glutamicum WM001 [CP022394]
145930
146003
+
Thr
GGT
-
¡û
>C181064148
CP022394
Actinomycetota
Corynebacterium glutamicum WM001 [CP022394]
146257
146330
+
Thr
GGT
-
¡û
>C181069956
CP022614
Actinomycetota
Corynebacterium glutamicum ATCC 14067 [CP022614]
555100
555173
+
Thr
GGT
-
¡û
>C181069957
CP022614
Actinomycetota
Corynebacterium glutamicum ATCC 14067 [CP022614]
555425
555498
+
Thr
GGT
-
¡û
>C181118419
CP025533
Actinomycetota
Corynebacterium glutamicum ATCC 13032 [CP025533]
497636
497709
+
Thr
GGT
-
¡û
>C181118420
CP025533
Actinomycetota
Corynebacterium glutamicum ATCC 13032 [CP025533]
497961
498034
+
Thr
GGT
-
¡û
>C181118483
CP025534
Actinomycetota
Corynebacterium glutamicum HA [CP025534]
1277057
1277130
+
Thr
GGT
-
¡û
>C181118484
CP025534
Actinomycetota
Corynebacterium glutamicum HA [CP025534]
1277382
1277455
+
Thr
GGT
-
¡û
>C181226238
LT906473
Actinomycetota
Corynebacterium cystitidis NCTC11863 [LT906473]
2132116
2132043
-
Thr
GGT
-
¡û
>W1910001226
APJJ01000008
Actinomycetota
Corynebacterium glutamicum ZL-2 [APJJ]
11147
11220
+
Thr
GGT
[ENA]
¡û
>W1910001227
APJJ01000008
Actinomycetota
Corynebacterium glutamicum ZL-2 [APJJ]
11474
11547
+
Thr
GGT
[ENA]
¡û
>W1910183456
BJNT01000005
Actinomycetota
Corynebacterium variabile NBRC 15286 [BJNT]
99818
99893
+
Thr
GGT
[ENA]
¡û
>W1910374173
FUIB01000014
Actinomycetota
Corynebacterium glutamicum B Co 03.31 [FUIB]
14153
14080
-
Thr
GGT
[ENA]
¡û
>W1910374174
FUIB01000014
Actinomycetota
Corynebacterium glutamicum B Co 03.31 [FUIB]
13828
13755
-
Thr
GGT
[ENA]
¡û
>C141004134
CP005959
Actinomycetota
Corynebacterium glutamicum MB001 [CP005959]
495864
495937
+
Thr
GGT
[Ensembl]
¡û
>C141004135
CP005959
Actinomycetota
Corynebacterium glutamicum MB001 [CP005959]
496189
496262
+
Thr
GGT
[Ensembl]
¡û
>W1910438304
FWCI01000014
Actinomycetota
Corynebacterium pacaense Marseille-P2417 [FWCI]
159208
159281
+
Thr
GGT
[ENA]
¡û
>W1910573049
JOLA01000045
Actinomycetota
Corynebacterium glutamicum 1006 [JOLA]
131905
131978
+
Thr
GGT
[ENA]
¡û
>W1810187386
PKHO01000001
Actinomycetota
Corynebacterium pyruviciproducens UMB0763 [PKHO]
105050
105123
+
Thr
GGT
[ENA]
¡û
>C151012220
CP006764
Actinomycetota
Corynebacterium doosanense CAU 212 = DSM 45436 [CP006764]
487393
487466
+
Thr
GGT
[Ensembl]
¡û
>C151032988
CP007722
Actinomycetota
Corynebacterium glutamicum ATCC 21831 [CP007722]
577194
577267
+
Thr
GGT
[Ensembl]
¡û
>C151032989
CP007722
Actinomycetota
Corynebacterium glutamicum ATCC 21831 [CP007722]
577520
577593
+
Thr
GGT
[Ensembl]
¡û
>C151033048
CP007724
Actinomycetota
Corynebacterium glutamicum AR1 [CP007724]
546378
546451
+
Thr
GGT
[Ensembl]
¡û
>C151033049
CP007724
Actinomycetota
Corynebacterium glutamicum AR1 [CP007724]
546704
546777
+
Thr
GGT
[Ensembl]
¡û
>C151069884
CP010451
Actinomycetota
Corynebacterium glutamicum B253 [CP010451]
553442
553515
+
Thr
GGT
[Ensembl]
¡û
>C151069885
CP010451
Actinomycetota
Corynebacterium glutamicum B253 [CP010451]
553767
553840
+
Thr
GGT
[Ensembl]
¡û
>C151079591
CP011309
Actinomycetota
[Brevibacterium] flavum ATCC 15168 [CP011309]
558319
558392
+
Thr
GGT
[Ensembl]
¡û
>C151079592
CP011309
Actinomycetota
[Brevibacterium] flavum ATCC 15168 [CP011309]
558644
558717
+
Thr
GGT
[Ensembl]
¡û
>W1511500671
JXBH01000009
Actinomycetota
Corynebacterium glutamicum SYPS-062 [JXBH]
52288
52361
+
Thr
GGT
[ENA]
¡û
>W1511500672
JXBH01000009
Actinomycetota
Corynebacterium glutamicum SYPS-062 [JXBH]
52613
52686
+
Thr
GGT
[ENA]
¡û
>W1511524458
JYEG01000009
Actinomycetota
Corynebacterium glutamicum SYPS-062-33a [JYEG]
180533
180460
-
Thr
GGT
[ENA]
¡û
>W1511524459
JYEG01000009
Actinomycetota
Corynebacterium glutamicum SYPS-062-33a [JYEG]
180208
180135
-
Thr
GGT
[ENA]
¡û
>W1511644811
LDYD01000005
Actinomycetota
Corynebacterium pilosum CIP103422 [LDYD]
105905
105978
+
Thr
GGT
[ENA]
¡û
>W11164157
AFIZ01000026
Actinomycetota
Corynebacterium nuruki S6-4 [AFIZ]
419
494
+
Thr
GGT
[ENA]
¡û
>W11164159
AFIZ01000029
Actinomycetota
Corynebacterium nuruki S6-4 [AFIZ]
54515
54442
-
Thr
GGT
[ENA]
¡û
>W11176868
AFYA01000004
Actinomycetota
Corynebacterium glutamicum S9114 [AFYA]
12257
12330
+
Thr
GGT
[ENA]
¡û
>C161003032
CP004046
Actinomycetota
[Brevibacterium] flavum ZL-1 [CP004046]
604231
604304
+
Thr
GGT
-
¡û
>C161003033
CP004046
Actinomycetota
[Brevibacterium] flavum ZL-1 [CP004046]
604558
604631
+
Thr
GGT
-
¡û
>C161003091
CP004062
Actinomycetota
Corynebacterium glutamicum ZL-6 [CP004062]
604264
604337
+
Thr
GGT
-
¡û
>C161003092
CP004062
Actinomycetota
Corynebacterium glutamicum ZL-6 [CP004062]
604591
604664
+
Thr
GGT
-
¡û
>C161040435
CP012194
Actinomycetota
Corynebacterium glutamicum CP [CP012194]
636062
636135
+
Thr
GGT
-
¡û
>C161040436
CP012194
Actinomycetota
Corynebacterium glutamicum CP [CP012194]
636389
636462
+
Thr
GGT
-
¡û
>C161045382
CP012749
Actinomycetota
Rhodococcus sp. 008 [CP012749]
4063699
4063772
+
Thr
GGT
[Ensembl]
¡û
>C161063644
CP013991
Actinomycetota
Corynebacterium glutamicum USDA-ARS-USMARC-56828 [CP013991]
590698
590771
+
Thr
GGT
[Ensembl]
¡û
>C161063645
CP013991
Actinomycetota
Corynebacterium glutamicum USDA-ARS-USMARC-56828 [CP013991]
591023
591096
+
Thr
GGT
[Ensembl]
¡û
>C161081119
CP014984
Actinomycetota
Corynebacterium glutamicum YI [CP014984]
553492
553565
+
Thr
GGT
-
¡û
>C161081120
CP014984
Actinomycetota
Corynebacterium glutamicum YI [CP014984]
553817
553890
+
Thr
GGT
-
¡û
>C161089863
CP015622
Actinomycetota
Corynebacterium crudilactis JZ16 [CP015622]
523190
523263
+
Thr
GGT
[Ensembl]
¡û
>C161089864
CP015622
Actinomycetota
Corynebacterium crudilactis JZ16 [CP015622]
523505
523578
+
Thr
GGT
[Ensembl]
¡û
>C161096062
CP016335
Actinomycetota
Corynebacterium glutamicum ATCC 13869 [CP016335]
595309
595382
+
Thr
GGT
-
¡û
>C161096063
CP016335
Actinomycetota
Corynebacterium glutamicum ATCC 13869 [CP016335]
595636
595709
+
Thr
GGT
-
¡û
>W121016255
AGQQ01000017
Actinomycetota
Corynebacterium glutamicum ATCC 14067 [AGQQ]
63644
63717
+
Thr
GGT
[ENA]
¡û
>W121016256
AGQQ01000017
Actinomycetota
Corynebacterium glutamicum ATCC 14067 [AGQQ]
63969
64042
+
Thr
GGT
[ENA]
¡û
>W1610163643
FAUH01000011
Actinomycetota
Corynebacterium variabile [FAUH]
16942
17017
+
Thr
GGT
[ENA]
¡û
>C131012016
CP004047
Actinomycetota
Corynebacterium glutamicum SCgG1 [CP004047]
623358
623431
+
Thr
GGT
[Ensembl]
¡û
>C131012017
CP004047
Actinomycetota
Corynebacterium glutamicum SCgG1 [CP004047]
623683
623756
+
Thr
GGT
[Ensembl]
¡û
>C131012076
CP004048
Actinomycetota
Corynebacterium glutamicum SCgG2 [CP004048]
623359
623432
+
Thr
GGT
[Ensembl]
¡û
>C131012077
CP004048
Actinomycetota
Corynebacterium glutamicum SCgG2 [CP004048]
623684
623757
+
Thr
GGT
[Ensembl]
¡û
>C131013464
CP004354
Actinomycetota
Corynebacterium callunae DSM 20147 [CP004354]
452079
452152
+
Thr
GGT
[Ensembl]
¡û
>C131013465
CP004354
Actinomycetota
Corynebacterium callunae DSM 20147 [CP004354]
452393
452466
+
Thr
GGT
[Ensembl]
¡û
>C131019741
HE802067
Actinomycetota
Corynebacterium glutamicum K051 ATCC 13032 [HE802067]
495904
495977
+
Thr
GGT
[Ensembl]
¡û
>C131019742
HE802067
Actinomycetota
Corynebacterium glutamicum K051 ATCC 13032 [HE802067]
496229
496302
+
Thr
GGT
[Ensembl]
¡û
>W1610648863
LJHN01000077
Actinomycetota
Mycobacterium intracellulare chimaera [LJHN]
69727
69654
-
Thr
GGT
[ENA]
¡û
>W1610666990
LJYI01000052
Actinomycetota
Mycobacteroides sp. H002 H002 [LJYI]
113660
113587
-
Thr
GGT
[ENA]
¡û
>W1710039845
BAYH01000008
Actinomycetota
Corynebacterium glutamicum [BAYH]
332185
332258
+
Thr
GGT
[ENA]
¡û
>W1710039846
BAYH01000008
Actinomycetota
Corynebacterium glutamicum [BAYH]
332510
332583
+
Thr
GGT
[ENA]
¡û
>W1710165310
FAUH01000011
Actinomycetota
Corynebacterium variabile [FAUH]
16942
17017
+
Thr
GGT
[ENA]
¡û
>W1710552129
FOGQ01000002
Actinomycetota
Corynebacterium cystitidis DSM 20524 [FOGQ]
348219
348146
-
Thr
GGT
[ENA]
¡û
>W1710563009
FOPJ01000001
Actinomycetota
Corynebacterium spheniscorum [FOPJ]
44013
44086
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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