This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235877 (79 seq.)
>W1710797427
LJTA01000032
Bacillota
Clostridium sporogenes [LJTA]
28464
28389
-
Ala
TGC
[ENA]
¡û
>W1710857062
LLZV01000016
Bacillota
Clostridium sporogenes [LLZV]
384
459
+
Ala
TGC
[ENA]
¡û
>W1711664710
MRAD01000016
Bacillota
Clostridium tepidum DSM 18688 [MRAD]
531
606
+
Ala
TGC
[ENA]
¡û
>W1711664726
MRAD01000035
Bacillota
Clostridium tepidum DSM 18688 [MRAD]
630
555
-
Ala
TGC
[ENA]
¡û
>W1711664728
MRAD01000037
Bacillota
Clostridium tepidum DSM 18688 [MRAD]
376
451
+
Ala
TGC
[ENA]
¡û
>W1711664796
MRAE01000030
Bacillota
Clostridium tepidum IEH 97212 [MRAE]
531
606
+
Ala
TGC
[ENA]
¡û
>W1711664813
MRAE01000086
Bacillota
Clostridium tepidum IEH 97212 [MRAE]
1028
953
-
Ala
TGC
[ENA]
¡û
>W1711664815
MRAE01000092
Bacillota
Clostridium tepidum IEH 97212 [MRAE]
426
501
+
Ala
TGC
[ENA]
¡û
>W1711903096
MZGX01000083
Bacillota
Ruminiclostridium hungatei [MZGX]
267
342
+
Ala
TGC
[ENA]
¡û
>w020771
AAVC01000118
Bacillota
Ruminiclostridium cellulolyticum H10 [AAVC]
1195
1118
-
Ala
TGC
[ENA]
¡û
>w020725
AAVC01000013
Bacillota
Ruminiclostridium cellulolyticum H10 [AAVC]
2533
2456
-
Ala
TGC
[ENA]
¡û
>WENV180097845
MTBK01214229
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
147
222
+
Ala
TGC
[ENA]
¢þ
>WENV180620556
OCQB01121390
[OCQB] human gut metagenome; human gut
392
317
-
Ala
TGC
[ENA]
¢þ
>WENV180715455
ODFW01009109
[ODFW] human metagenome; G_DNA_Stool
2104
2029
-
Ala
TGC
[ENA]
¢þ
>WENV180761494
ODHZ01013031
[ODHZ] human metagenome; G_DNA_Stool
649
724
+
Ala
TGC
[ENA]
¢þ
>WENV180828581
ODKA01014312
[ODKA] human metagenome; G_DNA_Stool
78
153
+
Ala
TGC
[ENA]
¢þ
>WENV180850986
ODKV01019229
[ODKV] human metagenome; G_DNA_Stool
228
303
+
Ala
TGC
[ENA]
¢þ
>WENV180897353
ODNI01017483
[ODNI] human metagenome; G_DNA_Tongue dorsum
1390
1317
-
Ala
TGC
[ENA]
¢þ
>WENV180957288
ODUK01026244
[ODUK] human metagenome; G_DNA_Stool
255
329
+
Ala
TGC
[ENA]
¢þ
>WENV180997581
ODVS01042153
[ODVS] human metagenome; G_DNA_Stool
66
141
+
Ala
TGC
[ENA]
¢þ
>WENV181037409
ODXP01052671
[ODXP] human metagenome; G_DNA_Stool
125
50
-
Ala
TGC
[ENA]
¢þ
>WENV181119378
OEFH01204702
[OEFH] human metagenome; G_DNA_Stool
78
153
+
Ala
TGC
[ENA]
¢þ
>WENV181713628
OGPQ01061328
[OGPQ] human gut metagenome; faeces
454
379
-
Ala
TGC
[ENA]
¢þ
>WENV182387748
OIEA01027985
[OIEA] human gut metagenome; feces
264
338
+
Ala
TGC
[ENA]
¢þ
>WENV182603259
OJJL01001882
[OJJL] metagenome; faeces
1559
1633
+
Ala
TGC
[ENA]
¢þ
>W141279249
JAGE01000001
Bacillota
Ruminiclostridium josui JCM 17888 [JAGE]
3168234
3168309
+
Ala
TGC
[ENA]
¡û
>W141279251
JAGE01000001
Bacillota
Ruminiclostridium josui JCM 17888 [JAGE]
3471827
3471902
+
Ala
TGC
[ENA]
¡û
>W141279259
JAGE01000001
Bacillota
Ruminiclostridium josui JCM 17888 [JAGE]
1699418
1699343
-
Ala
TGC
[ENA]
¡û
>WENV183129261
OLNZ01076321
[OLNZ] human gut metagenome; faeces
715
640
-
Ala
TGC
[ENA]
¢þ
>WENV183334682
OLWF01005745
[OLWF] human gut metagenome; feces
2239
2164
-
Ala
TGC
[ENA]
¢þ
>WENV183349046
OLWV01016999
[OLWV] human gut metagenome; feces
843
768
-
Ala
TGC
[ENA]
¢þ
>WENV183747783
PPCM01037785
[PPCM] marine sediment metagenome; marine sediment
149
223
+
Ala
TGC
[ENA]
¢þ
>WENV183779707
PPYF01147384
[PPYF] human gut metagenome; stool from patient with Crohn's disease
243
318
+
Ala
TGC
[ENA]
¢þ
>WENV170563053
CZCB01009215
[CZCB] anaerobic digester metagenome; anaerobic digester
2019
1944
-
Ala
TGC
[ENA]
¢þ
>WENV170563715
CZCB01026240
[CZCB] anaerobic digester metagenome; anaerobic digester
1481
1406
-
Ala
TGC
[ENA]
¢þ
>WENV170635506
JDSF01036932
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
206
133
-
Ala
TGC
[ENA]
¢þ
>WENV170724128
LSQX01294381
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
826
901
+
Ala
TGC
[ENA]
¢þ
>WENV170970008
MTKW01048754
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1
76
+
Ala
TGC
[ENA]
¢þ
>WENV170979363
MTKZ01086795
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1813
1886
+
Ala
TGC
[ENA]
¢þ
>C181054353
CP021850
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5807 [CP021850]
1097138
1097213
+
Ala
TGC
-
¡û
>C181195326
CP031097
Bacillota
Clostridium botulinum CFSAN034200 [CP031097]
1977036
1976961
-
Ala
TGC
-
¡û
>C191193266
LR130778
Bacillota
Petrocella atlantisensis [LR130778]
1938751
1938824
+
Ala
TGC
-
¡û
>C191193308
LR130778
Bacillota
Petrocella atlantisensis [LR130778]
1002066
1001993
-
Ala
TGC
-
¡û
>W141619905
JJMM01000009
Bacillota
Peptoclostridium litorale DSM 5388 [JJMM]
6385
6310
-
Ala
TGC
[ENA]
¡û
>W141619971
JJMM01000023
Bacillota
Peptoclostridium litorale DSM 5388 [JJMM]
2772
2697
-
Ala
TGC
[ENA]
¡û
>W141619977
JJMM01000025
Bacillota
Peptoclostridium litorale DSM 5388 [JJMM]
416
341
-
Ala
TGC
[ENA]
¡û
>W141733828
JNLE01000003
Bacillota
Clostridium sp. KNHs205 [JNLE]
599294
599367
+
Ala
TGC
[ENA]
¡û
>C09103054
CP001348
Bacillota
Ruminiclostridium cellulolyticum H10 H10; ATCC 35319 [CP001348]
455609
455684
+
Ala
TGC
[Ensembl]
¡û
>C09103056
CP001348
Bacillota
Ruminiclostridium cellulolyticum H10 H10; ATCC 35319 [CP001348]
606937
607012
+
Ala
TGC
[Ensembl]
¡û
>C09103064
CP001348
Bacillota
Ruminiclostridium cellulolyticum H10 H10; ATCC 35319 [CP001348]
1852868
1852943
+
Ala
TGC
[Ensembl]
¡û
>C09103075
CP001348
Bacillota
Ruminiclostridium cellulolyticum H10 H10; ATCC 35319 [CP001348]
3983465
3983390
-
Ala
TGC
[Ensembl]
¡û
>W1910927523
NIOI01000002
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5809 [NIOI]
630630
630705
+
Ala
TGC
[ENA]
¡û
>W1910927595
NIOJ01000185
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5806 [NIOJ]
152
77
-
Ala
TGC
[ENA]
¡û
>W1910927652
NIOK01000189
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5808 [NIOK]
152
77
-
Ala
TGC
[ENA]
¡û
>C151024042
CP007452
Bacillota
Peptoclostridium acidaminophilum DSM 3953 [CP007452]
13453
13528
+
Ala
TGC
[Ensembl]
¡û
>C151024045
CP007452
Bacillota
Peptoclostridium acidaminophilum DSM 3953 [CP007452]
50252
50327
+
Ala
TGC
[Ensembl]
¡û
>C151024068
CP007452
Bacillota
Peptoclostridium acidaminophilum DSM 3953 [CP007452]
189912
189987
+
Ala
TGC
[Ensembl]
¡û
>C151024091
CP007452
Bacillota
Peptoclostridium acidaminophilum DSM 3953 [CP007452]
197015
197090
+
Ala
TGC
[Ensembl]
¡û
>C11105636
AP012212
Bacillota
Clostridium sp. SY8519 [AP012212]
989158
989084
-
Ala
TGC
[Ensembl]
¡û
>C11105647
AP012212
Bacillota
Clostridium sp. SY8519 [AP012212]
180305
180231
-
Ala
TGC
[Ensembl]
¡û
>W11108211
ACXX02000011
Bacillota
Ruminiclostridium papyrosolvens DSM 2782 [ACXX]
96235
96160
-
Ala
TGC
[ENA]
¡û
>W1511706022
LGTC01000001
Bacillota
Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933 [LGTC]
594146
594221
+
Ala
TGC
[ENA]
¡û
>W1511706073
LGTC01000001
Bacillota
Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933 [LGTC]
3011587
3011512
-
Ala
TGC
[ENA]
¡û
>C121009827
CP003259
Bacillota
Clostridium sp. BNL1100 [CP003259]
1501977
1502052
+
Ala
TGC
[Ensembl]
¡û
>C121009829
CP003259
Bacillota
Clostridium sp. BNL1100 [CP003259]
1814199
1814274
+
Ala
TGC
[Ensembl]
¡û
>C121009843
CP003259
Bacillota
Clostridium sp. BNL1100 [CP003259]
4512283
4512208
-
Ala
TGC
[Ensembl]
¡û
>W1610601731
LFOT01000027
Bacillota
Clostridium botulinum [LFOT]
28068
27993
-
Ala
TGC
[ENA]
¡û
>W1610601848
LFOV01000023
Bacillota
Clostridium botulinum [LFOV]
34210
34135
-
Ala
TGC
[ENA]
¡û
>W1610602689
LFPK01000015
Bacillota
Clostridium sporogenes botulinum [LFPK]
166
241
+
Ala
TGC
[ENA]
¡û
>W1610603013
LFPP01000038
Bacillota
Clostridium botulinum [LFPP]
28442
28367
-
Ala
TGC
[ENA]
¡û
>W1610661384
LJTA01000032
Bacillota
Clostridium sporogenes [LJTA]
28464
28389
-
Ala
TGC
[ENA]
¡û
>W1610719443
LLZV01000016
Bacillota
Clostridium sporogenes [LLZV]
384
459
+
Ala
TGC
[ENA]
¡û
>WENV082242
BAAV01000897
Gut microbiome of Human (healthy human sample F1-T, Adult, Female)
523
600
+
Ala
TGC
[ENA]
>W1710723247
LFOT01000027
Bacillota
Clostridium botulinum [LFOT]
28068
27993
-
Ala
TGC
[ENA]
¡û
>W1710723364
LFOV01000023
Bacillota
Clostridium botulinum [LFOV]
34210
34135
-
Ala
TGC
[ENA]
¡û
>W1710724205
LFPK01000015
Bacillota
Clostridium sporogenes botulinum [LFPK]
166
241
+
Ala
TGC
[ENA]
¡û
>W1710724529
LFPP01000038
Bacillota
Clostridium botulinum [LFPP]
28442
28367
-
Ala
TGC
[ENA]
¡û
>W1710761906
LIIS01000004
Bacillota
Clostridium botulinum [LIIS]
28363
28288
-
Ala
TGC
[ENA]
¡û
>W1710761956
LIIS01000029
Bacillota
Clostridium botulinum [LIIS]
210
135
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK