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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235902 (125 seq.)
>W1711293865
LZYZ01000001
Bacillota
Clostridium saccharobutylicum [LZYZ]
1120977
1120902
-
Lys
CTT
[ENA]
¡û
>W1711293881
LZYZ01000004
Bacillota
Clostridium saccharobutylicum [LZYZ]
481854
481779
-
Lys
CTT
[ENA]
¡û
>W1711293940
LZZA01000013
Bacillota
Clostridium saccharobutylicum [LZZA]
4210
4135
-
Lys
CTT
[ENA]
¡û
>W1711293958
LZZA01000043
Bacillota
Clostridium saccharobutylicum [LZZA]
4620
4695
+
Lys
CTT
[ENA]
¡û
>W1711294041
LZZC01000024
Bacillota
Clostridium beijerinckii [LZZC]
36853
36928
+
Lys
CTT
[ENA]
¡û
>W1711294102
LZZC01000184
Bacillota
Clostridium beijerinckii [LZZC]
4286
4211
-
Lys
CTT
[ENA]
¡û
>W1711294151
LZZD01000173
Bacillota
Clostridium beijerinckii [LZZD]
36
111
+
Lys
CTT
[ENA]
¡û
>W1711294191
LZZE01000106
Bacillota
Clostridium beijerinckii [LZZE]
314
389
+
Lys
CTT
[ENA]
¡û
>W1711294203
LZZE01000162
Bacillota
Clostridium beijerinckii [LZZE]
4163
4088
-
Lys
CTT
[ENA]
¡û
>W1711294270
LZZG01000114
Bacillota
Clostridium beijerinckii [LZZG]
118
193
+
Lys
CTT
[ENA]
¡û
>W1711294276
LZZG01000146
Bacillota
Clostridium beijerinckii [LZZG]
552
477
-
Lys
CTT
[ENA]
¡û
>W1711294331
LZZI01000101
Bacillota
Clostridium beijerinckii [LZZI]
17326
17251
-
Lys
CTT
[ENA]
¡û
>W1711294345
LZZI01000217
Bacillota
Clostridium beijerinckii [LZZI]
4227
4152
-
Lys
CTT
[ENA]
¡û
>W1711294376
LZZJ01000118
Bacillota
Clostridium beijerinckii [LZZJ]
240
315
+
Lys
CTT
[ENA]
¡û
>W1711294384
LZZJ01000125
Bacillota
Clostridium beijerinckii [LZZJ]
3652
3577
-
Lys
CTT
[ENA]
¡û
>W1711294449
LZZK01000054
Bacillota
Clostridium beijerinckii [LZZK]
5192
5117
-
Lys
CTT
[ENA]
¡û
>W1711294486
LZZK01000127
Bacillota
Clostridium beijerinckii [LZZK]
376
451
+
Lys
CTT
[ENA]
¡û
>W1711294519
LZZM01000049
Bacillota
Clostridium puniceum [LZZM]
4610
4535
-
Lys
CTT
[ENA]
¡û
>W1711294536
LZZM01000055
Bacillota
Clostridium puniceum [LZZM]
3120
3195
+
Lys
CTT
[ENA]
¡û
>W1711320507
MBAF01000069
Bacillota
Clostridium beijerinckii [MBAF]
259
334
+
Lys
CTT
[ENA]
¡û
>W1711791695
MWJB01000151
Bacillota
Clostridium botulinum [MWJB]
370
445
+
Lys
CTT
[ENA]
¡û
>W1711791747
MWJC01000086
Bacillota
Clostridium botulinum [MWJC]
376
451
+
Lys
CTT
[ENA]
¡û
>W1711791839
MWJD01000008
Bacillota
Clostridium botulinum [MWJD]
376
451
+
Lys
CTT
[ENA]
¡û
>W1711792015
MWJG01000036
Bacillota
Clostridium botulinum [MWJG]
428
503
+
Lys
CTT
[ENA]
¡û
>W1711794335
MWMH01000001
Bacillota
Clostridium beijerinckii [MWMH]
13606
13681
+
Lys
CTT
[ENA]
¡û
>W1711902872
MZGT01000017
Bacillota
Clostridium chromiireducens [MZGT]
9878
9803
-
Lys
CTT
[ENA]
¡û
>W1711902909
MZGT01000145
Bacillota
Clostridium chromiireducens [MZGT]
133
208
+
Lys
CTT
[ENA]
¡û
>W1712096605
NHZR01000026
Bacillota
Clostridium diolis [NHZR]
42913
42988
+
Lys
CTT
[ENA]
¡û
>W1712096618
NHZR01000035
Bacillota
Clostridium diolis [NHZR]
148
223
+
Lys
CTT
[ENA]
¡û
>C171045638
CP016086
Bacillota
Clostridium saccharobutylicum NCP 200 [CP016086]
4907385
4907310
-
Lys
CTT
-
¡û
>C171045666
CP016087
Bacillota
Clostridium saccharoperbutylacetonicum N1-504 [CP016087]
508439
508514
+
Lys
CTT
-
¡û
>C171045696
CP016087
Bacillota
Clostridium saccharoperbutylacetonicum N1-504 [CP016087]
5905454
5905379
-
Lys
CTT
-
¡û
>C171045742
CP016089
Bacillota
Clostridium saccharobutylicum BAS/B3/SW/136 [CP016089]
426323
426398
+
Lys
CTT
-
¡û
>C171045790
CP016089
Bacillota
Clostridium saccharobutylicum BAS/B3/SW/136 [CP016089]
4907762
4907687
-
Lys
CTT
-
¡û
>C171045856
CP016090
Bacillota
Clostridium beijerinckii BAS/B3/I/124 [CP016090]
5880730
5880655
-
Lys
CTT
-
¡û
>C171045911
CP016091
Bacillota
Clostridium saccharobutylicum NCP 258 [CP016091]
440402
440477
+
Lys
CTT
-
¡û
>C171045952
CP016091
Bacillota
Clostridium saccharobutylicum NCP 258 [CP016091]
4749299
4749224
-
Lys
CTT
-
¡û
>C171045996
CP016092
Bacillota
Clostridium saccharobutylicum NCP 195 [CP016092]
426323
426398
+
Lys
CTT
-
¡û
>C171046041
CP016092
Bacillota
Clostridium saccharobutylicum NCP 195 [CP016092]
4907995
4907920
-
Lys
CTT
-
¡û
>W131092187
AOIF01000167
Bacillota
Clostridium saccharoperbutylacetonicum N1-4(HMT) [AOIF]
4165
4090
-
Lys
CTT
[ENA]
¡û
>W131092190
AOIF01000209
Bacillota
Clostridium saccharoperbutylacetonicum N1-4(HMT) [AOIF]
23
98
+
Lys
CTT
[ENA]
¡û
>W131098405
AORM01000064
Bacillota
Clostridium botulinum CB11/1-1 [AORM]
8
83
+
Lys
CTT
[ENA]
¡û
>W131156879
AQQG01000090
Bacillota
Clostridium diolis DSM 15410 [AQQG]
11673
11598
-
Lys
CTT
[ENA]
¡û
>W131156904
AQQG01000164
Bacillota
Clostridium diolis DSM 15410 [AQQG]
218
293
+
Lys
CTT
[ENA]
¡û
>C005070
CP000721
Bacillota
Clostridium beijerinckii NCIMB 8052 [CP000721]
432685
432760
+
Lys
CTT
[Ensembl]
¡û
>C005109
CP000721
Bacillota
Clostridium beijerinckii NCIMB 8052 [CP000721]
5747167
5747092
-
Lys
CTT
[Ensembl]
¡û
>w011542
AALO01000083
Bacillota
Clostridium beijerinckii NCIMB 8052 [AALO]
4895
4818
-
Lys
CTT
[ENA]
¡û
>w011534
AALO01000070
Bacillota
Clostridium beijerinckii NCIMB 8052 [AALO]
14164
14087
-
Lys
CTT
[ENA]
¡û
>WENV180232536
OBCO01000761
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
4214
4139
-
Lys
CTT
[ENA]
¢þ
>WENV180233450
OBCP01000570
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
60
135
+
Lys
CTT
[ENA]
¢þ
>WENV180233524
OBCP01000869
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
1535
1460
-
Lys
CTT
[ENA]
¢þ
>WENV180315039
OBKH01007204
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
516
591
+
Lys
CTT
[ENA]
¢þ
>W141039521
ALXI01000061
Bacillota
Clostridium sp. Maddingley MBC34-26 [ALXI]
46
121
+
Lys
CTT
[ENA]
¡û
>W141039549
ALXI01000153
Bacillota
Clostridium sp. Maddingley MBC34-26 [ALXI]
416
491
+
Lys
CTT
[ENA]
¡û
>W141039788
ALYJ01000052
Bacillota
Clostridium botulinum CDC66177 [ALYJ]
215
290
+
Lys
CTT
[ENA]
¡û
>WENV180569945
OCLR01000964
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
4214
4139
-
Lys
CTT
[ENA]
¢þ
>WENV180570917
OCLS01001099
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
1649
1574
-
Lys
CTT
[ENA]
¢þ
>WENV180571859
OCLT01000692
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
4214
4139
-
Lys
CTT
[ENA]
¢þ
>WENV180571906
OCLT01000886
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
696
771
+
Lys
CTT
[ENA]
¢þ
>WENV180574129
OCLW01000744
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
4214
4139
-
Lys
CTT
[ENA]
¢þ
>WENV180640148
OCRL01000686
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
4214
4139
-
Lys
CTT
[ENA]
¢þ
>WENV180641121
OCRM01000742
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
4214
4139
-
Lys
CTT
[ENA]
¢þ
>W141083157
AUPH01003169
Bacillota
Clostridium beijerinckii AAU1 [AUPH]
169
94
-
Lys
CTT
[ENA]
¡û
>W141200293
AYXR01000039
Bacillota
Clostridium beijerinckii NRRL B-598 [AYXR]
11771
11696
-
Lys
CTT
[ENA]
¡û
>W141200329
AYXR01000106
Bacillota
Clostridium beijerinckii NRRL B-598 [AYXR]
175
250
+
Lys
CTT
[ENA]
¡û
>WENV182984969
OKZN01007579
[OKZN] human gut metagenome; human gut
481
408
-
Lys
CTT
[ENA]
¢þ
>C08002653
CP001056
Bacillota
Clostridium botulinum B str. Eklund 17B [NRP] [CP001056]
3719051
3718979
-
Lys
CTT
[Ensembl]
¡û
>C08002582
CP001078
Bacillota
Clostridium botulinum E3 str. Alaska E43 [CP001078]
3576440
3576368
-
Lys
CTT
[Ensembl]
¡û
>C181176736
CP029329
Bacillota
Clostridium beijerinckii [CP029329]
1394757
1394832
+
Lys
CTT
-
¡û
>C181176774
CP029329
Bacillota
Clostridium beijerinckii [CP029329]
791568
791493
-
Lys
CTT
-
¡û
>C181203635
LN908213
Bacillota
Clostridium beijerinckii [LN908213]
447187
447262
+
Lys
CTT
-
¡û
>C181203674
LN908213
Bacillota
Clostridium beijerinckii [LN908213]
6159496
6159421
-
Lys
CTT
-
¡û
>W141560270
JHXK01000057
Bacillota
Clostridium beijerinckii HUN142 [JHXK]
98
173
+
Lys
CTT
[ENA]
¡û
>W09134275
ACSC01000002
Bacillota
Clostridium botulinum E1 str. 'BoNT E Beluga' [ACSC]
16441
16366
-
Lys
CTT
[ENA]
¡û
>W141822278
JQOJ01000040
Bacillota
Clostridium botulinum [JQOJ]
8884
8809
-
Lys
CTT
[ENA]
¡û
>W141822385
JQOK01000095
Bacillota
Clostridium botulinum [JQOK]
8617
8542
-
Lys
CTT
[ENA]
¡û
>C141007603
CP006721
Bacillota
Clostridium saccharobutylicum DSM 13864 [CP006721]
426324
426399
+
Lys
CTT
[Ensembl]
¡û
>C141007644
CP006721
Bacillota
Clostridium saccharobutylicum DSM 13864 [CP006721]
4907993
4907918
-
Lys
CTT
[Ensembl]
¡û
>W1911159971
NPMX01000023
Bacillota
Clostridium botulinum 202F [NPMX]
3202
3277
+
Lys
CTT
[ENA]
¡û
>W1911160047
NPMY01000054
Bacillota
Clostridium botulinum Hazen [NPMY]
492
567
+
Lys
CTT
[ENA]
¡û
>W1911533862
OKRA01000007
Bacillota
Clostridium cagae Marseille-P4344 [OKRA]
8963
9038
+
Lys
CTT
[ENA]
¡û
>W1911766212
QXDJ01000006
Bacillota
Clostridium chromiireducens C1 [QXDJ]
235851
235926
+
Lys
CTT
[ENA]
¡û
>W1911766257
QXDJ01000014
Bacillota
Clostridium chromiireducens C1 [QXDJ]
4367
4292
-
Lys
CTT
[ENA]
¡û
>W1810147522
PIQP01000062
Bacillota
Clostridium beijerinckii WB [PIQP]
229
304
+
Lys
CTT
[ENA]
¡û
>W1810271504
PRKY01000150
Bacillota
Clostridium diolis WST [PRKY]
76
151
+
Lys
CTT
[ENA]
¡û
>C151012353
CP006777
Bacillota
Clostridium beijerinckii ATCC 35702 SA-1 [CP006777]
432685
432760
+
Lys
CTT
[Ensembl]
¡û
>C151012392
CP006777
Bacillota
Clostridium beijerinckii ATCC 35702 SA-1 [CP006777]
5745585
5745510
-
Lys
CTT
[Ensembl]
¡û
>C151014170
CP006903
Bacillota
Clostridium botulinum 202F [CP006903]
2510016
2509941
-
Lys
CTT
[Ensembl]
¡û
>C151070174
CP010520
Bacillota
Clostridium botulinum NCTC 8266 [CP010520]
3528693
3528618
-
Lys
CTT
[Ensembl]
¡û
>C151070253
CP010521
Bacillota
Clostridium botulinum NCTC 8550 [CP010521]
3528694
3528619
-
Lys
CTT
[Ensembl]
¡û
>C151088294
CP011966
Bacillota
Clostridium beijerinckii NRRL B-598 [CP011966]
241716
241791
+
Lys
CTT
-
¡û
>C151088349
CP011966
Bacillota
Clostridium beijerinckii NRRL B-598 [CP011966]
5799230
5799155
-
Lys
CTT
-
¡û
>W1511506768
JXMR01000001
Bacillota
Clostridium botulinum NCTC 11219 [JXMR]
1012882
1012807
-
Lys
CTT
[ENA]
¡û
>W1511699097
LGII01000006
Bacillota
Clostridium botulinum ATCC 23387 [LGII]
8620
8545
-
Lys
CTT
[ENA]
¡û
>W1511699212
LGIJ01000037
Bacillota
Clostridium botulinum ATCC 9564 [LGIJ]
8862
8787
-
Lys
CTT
[ENA]
¡û
>W11176291
AFWX01000001
Bacillota
Clostridium sp. DL-VIII [AFWX]
716984
717059
+
Lys
CTT
[ENA]
¡û
>W11176322
AFWX01000002
Bacillota
Clostridium sp. DL-VIII [AFWX]
3582725
3582650
-
Lys
CTT
[ENA]
¡û
>C161023458
CP010086
Bacillota
Clostridium beijerinckii NCIMB 14988 [CP010086]
404285
404360
+
Lys
CTT
[Ensembl]
¡û
>C161023501
CP010086
Bacillota
Clostridium beijerinckii NCIMB 14988 [CP010086]
6185284
6185209
-
Lys
CTT
[Ensembl]
¡û
>C161104319
FR745875
Bacillota
Clostridium botulinum B str. Eklund 17B [NRP] [FR745875]
3700144
3700069
-
Lys
CTT
-
¡û
>W121102393
AKWA01000125
Bacillota
Clostridium beijerinckii G117 [AKWA]
5
80
+
Lys
CTT
[ENA]
¡û
>C131012923
CP004121
Bacillota
Clostridium saccharoperbutylacetonicum N1-4[HMT] [CP004121]
544873
544948
+
Lys
CTT
[Ensembl]
¡û
>C131012952
CP004121
Bacillota
Clostridium saccharoperbutylacetonicum N1-4[HMT] [CP004121]
6232598
6232523
-
Lys
CTT
[Ensembl]
¡û
>W1610601358
LFOM01000019
Bacillota
Clostridium botulinum [LFOM]
62
137
+
Lys
CTT
[ENA]
¡û
>W1610602137
LFPA01000184
Bacillota
Clostridium botulinum [LFPA]
8789
8714
-
Lys
CTT
[ENA]
¡û
>W1610602181
LFPB01000058
Bacillota
Clostridium botulinum [LFPB]
3673
3598
-
Lys
CTT
[ENA]
¡û
>W1610602219
LFPC01000026
Bacillota
Clostridium botulinum [LFPC]
106
181
+
Lys
CTT
[ENA]
¡û
>W1610602271
LFPD01000048
Bacillota
Clostridium botulinum [LFPD]
3766
3691
-
Lys
CTT
[ENA]
¡û
>W1610602347
LFPE01000038
Bacillota
Clostridium botulinum [LFPE]
275
350
+
Lys
CTT
[ENA]
¡û
>W1610602445
LFPG01000042
Bacillota
Clostridium botulinum [LFPG]
275
350
+
Lys
CTT
[ENA]
¡û
>W1610604301
LFQW01000065
Bacillota
Clostridium botulinum [LFQW]
275
350
+
Lys
CTT
[ENA]
¡û
>W1610604358
LFQX01000023
Bacillota
Clostridium botulinum [LFQX]
275
350
+
Lys
CTT
[ENA]
¡û
>W1611062530
MBAF01000069
Bacillota
Clostridium beijerinckii [MBAF]
259
334
+
Lys
CTT
[ENA]
¡û
>W1710558929
FOMG01000003
Bacillota
Clostridium uliginosum [FOMG]
234106
234181
+
Lys
CTT
[ENA]
¡û
>W1710558974
FOMG01000051
Bacillota
Clostridium uliginosum [FOMG]
11130
11055
-
Lys
CTT
[ENA]
¡û
>W1710722874
LFOM01000019
Bacillota
Clostridium botulinum [LFOM]
62
137
+
Lys
CTT
[ENA]
¡û
>W1710723653
LFPA01000184
Bacillota
Clostridium botulinum [LFPA]
8789
8714
-
Lys
CTT
[ENA]
¡û
>W1710723697
LFPB01000058
Bacillota
Clostridium botulinum [LFPB]
3673
3598
-
Lys
CTT
[ENA]
¡û
>W1710723735
LFPC01000026
Bacillota
Clostridium botulinum [LFPC]
106
181
+
Lys
CTT
[ENA]
¡û
>W1710723787
LFPD01000048
Bacillota
Clostridium botulinum [LFPD]
3766
3691
-
Lys
CTT
[ENA]
¡û
>W1710723863
LFPE01000038
Bacillota
Clostridium botulinum [LFPE]
275
350
+
Lys
CTT
[ENA]
¡û
>W1710723961
LFPG01000042
Bacillota
Clostridium botulinum [LFPG]
275
350
+
Lys
CTT
[ENA]
¡û
>W1710725817
LFQW01000065
Bacillota
Clostridium botulinum [LFQW]
275
350
+
Lys
CTT
[ENA]
¡û
>W1710725874
LFQX01000023
Bacillota
Clostridium botulinum [LFQX]
275
350
+
Lys
CTT
[ENA]
¡û
>W1710754741
LHUM01000032
Bacillota
Clostridium botulinum [LHUM]
8861
8786
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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