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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235908 (43 seq.)
>W1711294019
LZZB01000083
Bacillota
Clostridium beijerinckii [LZZB]
26951
27026
+
Thr
GGT
[ENA]
¡û
>W1711294048
LZZC01000025
Bacillota
Clostridium beijerinckii [LZZC]
8140
8215
+
Thr
GGT
[ENA]
¡û
>W1711294110
LZZD01000011
Bacillota
Clostridium beijerinckii [LZZD]
24706
24781
+
Thr
GGT
[ENA]
¡û
>W1711294158
LZZE01000011
Bacillota
Clostridium beijerinckii [LZZE]
24704
24779
+
Thr
GGT
[ENA]
¡û
>W1711294218
LZZF01000074
Bacillota
Clostridium beijerinckii [LZZF]
26928
27003
+
Thr
GGT
[ENA]
¡û
>W1711294243
LZZG01000038
Bacillota
Clostridium beijerinckii [LZZG]
27022
27097
+
Thr
GGT
[ENA]
¡û
>W1711294291
LZZH01000066
Bacillota
Clostridium beijerinckii [LZZH]
26927
27002
+
Thr
GGT
[ENA]
¡û
>W1711294295
LZZI01000005
Bacillota
Clostridium beijerinckii [LZZI]
111564
111489
-
Thr
GGT
[ENA]
¡û
>W1711294401
LZZJ01000239
Bacillota
Clostridium beijerinckii [LZZJ]
27365
27440
+
Thr
GGT
[ENA]
¡û
>W1711294406
LZZK01000001
Bacillota
Clostridium beijerinckii [LZZK]
27741
27816
+
Thr
GGT
[ENA]
¡û
>W1711320498
MBAF01000048
Bacillota
Clostridium beijerinckii [MBAF]
27173
27248
+
Thr
GGT
[ENA]
¡û
>W131156889
AQQG01000128
Bacillota
Clostridium diolis DSM 15410 [AQQG]
198
123
-
Thr
GGT
[ENA]
¡û
>W1711794359
MWMH01000008
Bacillota
Clostridium beijerinckii [MWMH]
28958
29033
+
Thr
GGT
[ENA]
¡û
>W1712096617
NHZR01000030
Bacillota
Clostridium diolis [NHZR]
260
185
-
Thr
GGT
[ENA]
¡û
>C171045816
CP016090
Bacillota
Clostridium beijerinckii BAS/B3/I/124 [CP016090]
176764
176839
+
Thr
GGT
-
¡û
>W131156823
AQQF01000139
Bacillota
Clostridium butyricum DSM 10702 [AQQF]
209
134
-
Thr
GGT
[ENA]
¡û
>W131232804
AUJN01000029
Bacillota
Clostridium butyricum AGR2140 [AUJN]
25913
25988
+
Thr
GGT
[ENA]
¡û
>C005055
CP000721
Bacillota
Clostridium beijerinckii NCIMB 8052 [CP000721]
174419
174494
+
Thr
GGT
[Ensembl]
¡û
>WENV180232441
OBCO01000443
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
179
104
-
Thr
GGT
[ENA]
¢þ
>WENV180233026
OBCP01000068
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
27009
27084
+
Thr
GGT
[ENA]
¢þ
>WENV180569558
OCLR01000167
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
84131
84056
-
Thr
GGT
[ENA]
¢þ
>WENV180570489
OCLS01000163
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
84131
84056
-
Thr
GGT
[ENA]
¢þ
>WENV180571384
OCLT01000072
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
27065
27140
+
Thr
GGT
[ENA]
¢þ
>WENV180573631
OCLW01000069
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
27065
27140
+
Thr
GGT
[ENA]
¢þ
>WENV180639698
OCRL01000074
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
27065
27140
+
Thr
GGT
[ENA]
¢þ
>WENV180640784
OCRM01000176
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
84131
84056
-
Thr
GGT
[ENA]
¢þ
>W141083136
AUPH01001877
Bacillota
Clostridium beijerinckii AAU1 [AUPH]
2379
2454
+
Thr
GGT
[ENA]
¡û
>WENV181811005
OGSX01000747
[OGSX] human gut metagenome; fecal sample 1 from infant 8
190
115
-
Thr
GGT
[ENA]
¢þ
>WENV181811658
OGSZ01000245
[OGSZ] human gut metagenome; fecal sample 3 from infant 8
26082
26157
+
Thr
GGT
[ENA]
¢þ
>W141200310
AYXR01000062
Bacillota
Clostridium beijerinckii NRRL B-598 [AYXR]
124
49
-
Thr
GGT
[ENA]
¡û
>WENV182826941
OKCW01000237
[OKCW] human gut metagenome; human gut
3833
3908
+
Thr
GGT
[ENA]
¢þ
>WENV182952953
OKVX01000883
[OKVX] human gut metagenome; human gut
212
137
-
Thr
GGT
[ENA]
¢þ
>WENV183780948
PPYF01188545
[PPYF] human gut metagenome; stool from patient with Crohn's disease
11520
11595
+
Thr
GGT
[ENA]
¢þ
>C181203620
LN908213
Bacillota
Clostridium beijerinckii [LN908213]
174284
174359
+
Thr
GGT
-
¡û
>W141560266
JHXK01000046
Bacillota
Clostridium beijerinckii HUN142 [JHXK]
1334
1259
-
Thr
GGT
[ENA]
¡û
>W1810147512
PIQP01000038
Bacillota
Clostridium beijerinckii WB [PIQP]
27266
27341
+
Thr
GGT
[ENA]
¡û
>W1810250504
PQCR01000074
Bacillota
Clostridium sp. 2-1 [PQCR]
155
80
-
Thr
GGT
[ENA]
¡û
>W1810271464
PRKY01000014
Bacillota
Clostridium diolis WST [PRKY]
27197
27272
+
Thr
GGT
[ENA]
¡û
>C151012338
CP006777
Bacillota
Clostridium beijerinckii ATCC 35702 SA-1 [CP006777]
174419
174494
+
Thr
GGT
[Ensembl]
¡û
>C151088334
CP011966
Bacillota
Clostridium beijerinckii NRRL B-598 [CP011966]
6012303
6012228
-
Thr
GGT
-
¡û
>C161023443
CP010086
Bacillota
Clostridium beijerinckii NCIMB 14988 [CP010086]
178174
178249
+
Thr
GGT
[Ensembl]
¡û
>W121102387
AKWA01000102
Bacillota
Clostridium beijerinckii G117 [AKWA]
26999
27074
+
Thr
GGT
[ENA]
¡û
>W1611062521
MBAF01000048
Bacillota
Clostridium beijerinckii [MBAF]
27173
27248
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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