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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23591 (125 seq.)
>W1710776042
LIZH01001340
Betaproteobacteria
Duganella sp. Ant L27C-9 [LIZH]
1892
1981
+
Ser
CGA
[ENA]
¡û
>W1710890905
LNCE01000033
Betaproteobacteria
Janthinobacterium sp. Ant5-2-1 [LNCE]
243
154
-
Ser
CGA
[ENA]
¡û
>W1710924010
LOCQ01000049
Betaproteobacteria
Janthinobacterium psychrotolerans S3-2 [LOCQ]
20554
20465
-
Ser
CGA
[ENA]
¡û
>W1710924011
LOCQ01000049
Betaproteobacteria
Janthinobacterium psychrotolerans S3-2 [LOCQ]
20142
20053
-
Ser
CGA
[ENA]
¡û
>W1711033392
LRHW01000051
Betaproteobacteria
Janthinobacterium lividum [LRHW]
5158
5069
-
Ser
CGA
[ENA]
¡û
>W1711033393
LRHW01000051
Betaproteobacteria
Janthinobacterium lividum [LRHW]
4722
4633
-
Ser
CGA
[ENA]
¡û
>W1711033394
LRHW01000051
Betaproteobacteria
Janthinobacterium lividum [LRHW]
4286
4197
-
Ser
CGA
[ENA]
¡û
>W1711033441
LRHX01000004
Betaproteobacteria
Janthinobacterium sp. MP5059B [LRHX]
184467
184556
+
Ser
CGA
[ENA]
¡û
>W1711033442
LRHX01000004
Betaproteobacteria
Janthinobacterium sp. MP5059B [LRHX]
184903
184992
+
Ser
CGA
[ENA]
¡û
>W1711033529
LRHY01000089
Betaproteobacteria
Janthinobacterium sp. HH100 [LRHY]
63066
63155
+
Ser
CGA
[ENA]
¡û
>W1711033530
LRHY01000089
Betaproteobacteria
Janthinobacterium sp. HH100 [LRHY]
63501
63590
+
Ser
CGA
[ENA]
¡û
>W1711033585
LRHZ01000011
Betaproteobacteria
Janthinobacterium sp. HH102 [LRHZ]
94604
94515
-
Ser
CGA
[ENA]
¡û
>W1711033586
LRHZ01000011
Betaproteobacteria
Janthinobacterium sp. HH102 [LRHZ]
94169
94080
-
Ser
CGA
[ENA]
¡û
>W1711033686
LRIA01000140
Betaproteobacteria
Janthinobacterium sp. HH103 [LRIA]
210068
210157
+
Ser
CGA
[ENA]
¡û
>W1711033687
LRIA01000140
Betaproteobacteria
Janthinobacterium sp. HH103 [LRIA]
210503
210592
+
Ser
CGA
[ENA]
¡û
>W1711033719
LRIB01000041
Betaproteobacteria
Janthinobacterium sp. HH104 [LRIB]
10258
10169
-
Ser
CGA
[ENA]
¡û
>W1711033720
LRIB01000041
Betaproteobacteria
Janthinobacterium sp. HH104 [LRIB]
9900
9811
-
Ser
CGA
[ENA]
¡û
>W1711033782
LRIC01000056
Betaproteobacteria
Janthinobacterium sp. HH106 [LRIC]
8361
8272
-
Ser
CGA
[ENA]
¡û
>W1711033783
LRIC01000056
Betaproteobacteria
Janthinobacterium sp. HH106 [LRIC]
7930
7841
-
Ser
CGA
[ENA]
¡û
>W1711033838
LRID01000101
Betaproteobacteria
Janthinobacterium sp. HH107 [LRID]
58049
58138
+
Ser
CGA
[ENA]
¡û
>W1711033839
LRID01000101
Betaproteobacteria
Janthinobacterium sp. HH107 [LRID]
58480
58569
+
Ser
CGA
[ENA]
¡û
>W1711308612
MAQB02000001
Betaproteobacteria
Janthinobacterium lividum [MAQB]
69137
69048
-
Ser
CGA
[ENA]
¡û
>W131179107
ARMC01000031
Betaproteobacteria
Oxalobacteraceae bacterium AB_14 [ARMC]
291570
291659
+
Ser
CGA
[ENA]
¡û
>W131179108
ARMC01000031
Betaproteobacteria
Oxalobacteraceae bacterium AB_14 [ARMC]
291692
291781
+
Ser
CGA
[ENA]
¡û
>W1712004464
NEGX01000024
Betaproteobacteria
Janthinobacterium sp. GW460W [NEGX]
55014
55103
+
Ser
CGA
[ENA]
¡û
>W1712004465
NEGX01000024
Betaproteobacteria
Janthinobacterium sp. GW460W [NEGX]
55437
55526
+
Ser
CGA
[ENA]
¡û
>W1712004511
NEGY01000006
Betaproteobacteria
Janthinobacterium sp. GW460P [NEGY]
158683
158594
-
Ser
CGA
[ENA]
¡û
>W1712004512
NEGY01000006
Betaproteobacteria
Janthinobacterium sp. GW460P [NEGY]
158260
158171
-
Ser
CGA
[ENA]
¡û
>W1712004634
NEGZ01000051
Betaproteobacteria
Janthinobacterium sp. GW458P [NEGZ]
53312
53401
+
Ser
CGA
[ENA]
¡û
>W1712004635
NEGZ01000051
Betaproteobacteria
Janthinobacterium sp. GW458P [NEGZ]
53666
53755
+
Ser
CGA
[ENA]
¡û
>W1712004694
NEHA01000036
Betaproteobacteria
Janthinobacterium sp. GW456W [NEHA]
54846
54935
+
Ser
CGA
[ENA]
¡û
>W1712004695
NEHA01000036
Betaproteobacteria
Janthinobacterium sp. GW456W [NEHA]
55269
55358
+
Ser
CGA
[ENA]
¡û
>W1712004802
NEHB01000027
Betaproteobacteria
Janthinobacterium sp. GW456P [NEHB]
28705
28616
-
Ser
CGA
[ENA]
¡û
>W1712004803
NEHB01000027
Betaproteobacteria
Janthinobacterium sp. GW456P [NEHB]
28282
28193
-
Ser
CGA
[ENA]
¡û
>C171010523
CP011319
Betaproteobacteria
Janthinobacterium sp. 1_2014MBL_MicDiv [CP011319]
4143561
4143472
-
Ser
CGA
-
¡û
>C171010524
CP011319
Betaproteobacteria
Janthinobacterium sp. 1_2014MBL_MicDiv [CP011319]
4143201
4143112
-
Ser
CGA
-
¡û
>C171094974
CP019510
Betaproteobacteria
Janthinobacterium sp. LM6 [CP019510]
2237010
2237099
+
Ser
CGA
-
¡û
>C171094975
CP019510
Betaproteobacteria
Janthinobacterium sp. LM6 [CP019510]
2237452
2237541
+
Ser
CGA
-
¡û
>WENV180022337
FTFY01001028
[FTFY] metagenome; soil
4330
4419
+
Ser
CGA
[ENA]
¢þ
>WENV180029998
FTJL01054593
[FTJL] metagenome; soil
519
608
+
Ser
CGA
[ENA]
¢þ
>W141484502
JFYR01000043
Betaproteobacteria
Janthinobacterium lividum [JFYR]
11909
11820
-
Ser
CGA
[ENA]
¡û
>W141484503
JFYR01000043
Betaproteobacteria
Janthinobacterium lividum [JFYR]
11551
11462
-
Ser
CGA
[ENA]
¡û
>C181081111
CP023422
Betaproteobacteria
Janthinobacterium svalbardensis PAMC 27463 [CP023422]
2359924
2360013
+
Ser
CGA
-
¡û
>C181081112
CP023422
Betaproteobacteria
Janthinobacterium svalbardensis PAMC 27463 [CP023422]
2360349
2360438
+
Ser
CGA
-
¡û
>C191098107
CP033019
Betaproteobacteria
Janthinobacterium agaricidamnosum BHSEK [CP033019]
1630513
1630602
+
Ser
CGA
-
¡û
>C191098108
CP033019
Betaproteobacteria
Janthinobacterium agaricidamnosum BHSEK [CP033019]
1630948
1631037
+
Ser
CGA
-
¡û
>C191188154
CP041185
Betaproteobacteria
Janthinobacterium tructae SNU WT3 [CP041185]
6118617
6118706
+
Ser
CGA
-
¡û
>C191188155
CP041185
Betaproteobacteria
Janthinobacterium tructae SNU WT3 [CP041185]
6118977
6119066
+
Ser
CGA
-
¡û
>W141821526
JQNP01000001
Betaproteobacteria
Janthinobacterium sp. RA13 [JQNP]
6306229
6306318
+
Ser
CGA
[ENA]
¡û
>W141821527
JQNP01000001
Betaproteobacteria
Janthinobacterium sp. RA13 [JQNP]
6306576
6306665
+
Ser
CGA
[ENA]
¡û
>W1910942589
NJGY01000005
Betaproteobacteria
Janthinobacterium sp. PC23-8 [NJGY]
308806
308895
+
Ser
CGA
[ENA]
¡û
>W1910942590
NJGY01000005
Betaproteobacteria
Janthinobacterium sp. PC23-8 [NJGY]
309314
309403
+
Ser
CGA
[ENA]
¡û
>W1911199846
NRDQ01000022
Betaproteobacteria
Janthinobacterium sp. AD80 [NRDQ]
57818
57907
+
Ser
CGA
[ENA]
¡û
>W1911199847
NRDQ01000022
Betaproteobacteria
Janthinobacterium sp. AD80 [NRDQ]
58331
58420
+
Ser
CGA
[ENA]
¡û
>W1911572375
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
4563946
4564035
+
Ser
CGA
[ENA]
¡û
>W1810068174
PDZI01000007
Betaproteobacteria
Janthinobacterium sp. BJB303 [PDZI]
1181
1092
-
Ser
CGA
[ENA]
¡û
>W1810068175
PDZI01000007
Betaproteobacteria
Janthinobacterium sp. BJB303 [PDZI]
655
566
-
Ser
CGA
[ENA]
¡û
>W1810068219
PDZJ01000001
Betaproteobacteria
Janthinobacterium sp. BJB301 [PDZJ]
258745
258834
+
Ser
CGA
[ENA]
¡û
>W1810068220
PDZJ01000001
Betaproteobacteria
Janthinobacterium sp. BJB301 [PDZJ]
259182
259271
+
Ser
CGA
[ENA]
¡û
>W1810068300
PDZK01000001
Betaproteobacteria
Janthinobacterium sp. BJB446 [PDZK]
311025
311114
+
Ser
CGA
[ENA]
¡û
>W1810068301
PDZK01000001
Betaproteobacteria
Janthinobacterium sp. BJB446 [PDZK]
311461
311550
+
Ser
CGA
[ENA]
¡û
>W1810068444
PDZL01000027
Betaproteobacteria
Janthinobacterium sp. BJB426 [PDZL]
1326
1237
-
Ser
CGA
[ENA]
¡û
>W1810068445
PDZL01000027
Betaproteobacteria
Janthinobacterium sp. BJB426 [PDZL]
901
812
-
Ser
CGA
[ENA]
¡û
>W1810068494
PDZM01000007
Betaproteobacteria
Janthinobacterium sp. BJB312 [PDZM]
189888
189977
+
Ser
CGA
[ENA]
¡û
>W1810068495
PDZM01000007
Betaproteobacteria
Janthinobacterium sp. BJB312 [PDZM]
190315
190404
+
Ser
CGA
[ENA]
¡û
>W1810068577
PDZN01000016
Betaproteobacteria
Janthinobacterium sp. BJB304 [PDZN]
122384
122295
-
Ser
CGA
[ENA]
¡û
>W1810068578
PDZN01000016
Betaproteobacteria
Janthinobacterium sp. BJB304 [PDZN]
121953
121864
-
Ser
CGA
[ENA]
¡û
>W1810068680
PDZO02000026
Betaproteobacteria
Janthinobacterium sp. BJB1 [PDZO]
34940
35029
+
Ser
CGA
[ENA]
¡û
>W1810068681
PDZO02000026
Betaproteobacteria
Janthinobacterium sp. BJB1 [PDZO]
35466
35555
+
Ser
CGA
[ENA]
¡û
>W1810069786
PEBS01000077
Betaproteobacteria
Janthinobacterium sp. ROICE36 [PEBS]
9324
9235
-
Ser
CGA
[ENA]
¡û
>W1810069787
PEBS01000077
Betaproteobacteria
Janthinobacterium sp. ROICE36 [PEBS]
8915
8826
-
Ser
CGA
[ENA]
¡û
>W1810071330
PEEQ01000001
Betaproteobacteria
Janthinobacterium sp. 13 [PEEQ]
1134228
1134139
-
Ser
CGA
[ENA]
¡û
>W1810071331
PEEQ01000001
Betaproteobacteria
Janthinobacterium sp. 13 [PEEQ]
1133791
1133702
-
Ser
CGA
[ENA]
¡û
>W1810072828
PEFN01000001
Betaproteobacteria
Janthinobacterium sp. 35 [PEFN]
718298
718209
-
Ser
CGA
[ENA]
¡û
>W1810072829
PEFN01000001
Betaproteobacteria
Janthinobacterium sp. 35 [PEFN]
717939
717850
-
Ser
CGA
[ENA]
¡û
>W1810089400
PGES01000001
Betaproteobacteria
Janthinobacterium sp. 67 [PGES]
6156734
6156823
+
Ser
CGA
[ENA]
¡û
>W1810089401
PGES01000001
Betaproteobacteria
Janthinobacterium sp. 67 [PGES]
6157081
6157170
+
Ser
CGA
[ENA]
¡û
>W1810121278
PHUG01000001
Betaproteobacteria
Janthinobacterium sp. 64 [PHUG]
5713919
5714008
+
Ser
CGA
[ENA]
¡û
>W1810121279
PHUG01000001
Betaproteobacteria
Janthinobacterium sp. 64 [PHUG]
5714343
5714432
+
Ser
CGA
[ENA]
¡û
>W1810172780
PJMQ01000001
Betaproteobacteria
Janthinobacterium sp. 61 [PJMQ]
328751
328840
+
Ser
CGA
[ENA]
¡û
>W1810172781
PJMQ01000001
Betaproteobacteria
Janthinobacterium sp. 61 [PJMQ]
329161
329250
+
Ser
CGA
[ENA]
¡û
>W1810576773
QENT01000001
Betaproteobacteria
Janthinobacterium sp. 78 [QENT]
2288421
2288510
+
Ser
CGA
[ENA]
¡û
>W1810576774
QENT01000001
Betaproteobacteria
Janthinobacterium sp. 78 [QENT]
2288780
2288869
+
Ser
CGA
[ENA]
¡û
>W1810908316
QVIO01000002
Betaproteobacteria
Duganella sp. BJB476 [QVIO]
526968
526879
-
Ser
CGA
[ENA]
¡û
>W1810908317
QVIO01000002
Betaproteobacteria
Duganella sp. BJB476 [QVIO]
526846
526757
-
Ser
CGA
[ENA]
¡û
>W1810908373
QVIP01000002
Betaproteobacteria
Duganella sp. BJB475 [QVIP]
298832
298921
+
Ser
CGA
[ENA]
¡û
>W1810908374
QVIP01000002
Betaproteobacteria
Duganella sp. BJB475 [QVIP]
298954
299043
+
Ser
CGA
[ENA]
¡û
>C151062590
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
2146917
2147006
+
Ser
CGA
[Ensembl]
¡û
>C11105090
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
3192996
3192907
-
Ser
CGA
[Ensembl]
¡û
>W1511355722
JRRH01000065
Betaproteobacteria
Janthinobacterium lividum MTR [JRRH]
9204
9115
-
Ser
CGA
[ENA]
¡û
>W1511355723
JRRH01000065
Betaproteobacteria
Janthinobacterium lividum MTR [JRRH]
8844
8755
-
Ser
CGA
[ENA]
¡û
>W1511588745
LBCO01000007
Betaproteobacteria
Janthinobacterium sp. KBS0711 [LBCO]
330312
330401
+
Ser
CGA
[ENA]
¡û
>W1511588746
LBCO01000007
Betaproteobacteria
Janthinobacterium sp. KBS0711 [LBCO]
330668
330757
+
Ser
CGA
[ENA]
¡û
>C161053611
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
3642765
3642676
-
Ser
CGA
[Ensembl]
¡û
>C161053633
CP013233
Betaproteobacteria
Collimonas arenae Ter10 [CP013233]
1669758
1669847
+
Ser
CGA
-
¡û
>C161053681
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
1956363
1956452
+
Ser
CGA
[Ensembl]
¡û
>C161053729
CP013235
Betaproteobacteria
Collimonas arenae Ter282 [CP013235]
1669995
1670084
+
Ser
CGA
[Ensembl]
¡û
>C161053779
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
2058264
2058353
+
Ser
CGA
[Ensembl]
¡û
>W121031808
AHHB01000026
Betaproteobacteria
Janthinobacterium lividum PAMC 25724 [AHHB]
133764
133853
+
Ser
CGA
[ENA]
¡û
>W121031809
AHHB01000026
Betaproteobacteria
Janthinobacterium lividum PAMC 25724 [AHHB]
134335
134424
+
Ser
CGA
[ENA]
¡û
>W1610640148
LIZH01001340
Betaproteobacteria
Duganella sp. Ant L27C-9 [LIZH]
1892
1981
+
Ser
CGA
[ENA]
¡û
>W1610751301
LNCE01000033
Betaproteobacteria
Janthinobacterium sp. Ant5-2-1 [LNCE]
243
154
-
Ser
CGA
[ENA]
¡û
>W1610781656
LOCQ01000049
Betaproteobacteria
Janthinobacterium psychrotolerans S3-2 [LOCQ]
20554
20465
-
Ser
CGA
[ENA]
¡û
>W1610781657
LOCQ01000049
Betaproteobacteria
Janthinobacterium psychrotolerans S3-2 [LOCQ]
20142
20053
-
Ser
CGA
[ENA]
¡û
>W1611056262
MAQB01000046
Betaproteobacteria
Janthinobacterium lividum [MAQB]
81796
81707
-
Ser
CGA
[ENA]
¡û
>W1710509372
FMXD01000007
Betaproteobacteria
Janthinobacterium sp. 551a [FMXD]
247993
248082
+
Ser
CGA
[ENA]
¡û
>W1710509373
FMXD01000007
Betaproteobacteria
Janthinobacterium sp. 551a [FMXD]
248429
248518
+
Ser
CGA
[ENA]
¡û
>W1710517080
FNDA01000010
Betaproteobacteria
Janthinobacterium sp. YR213 [FNDA]
10492
10403
-
Ser
CGA
[ENA]
¡û
>W1710517081
FNDA01000010
Betaproteobacteria
Janthinobacterium sp. YR213 [FNDA]
10056
9967
-
Ser
CGA
[ENA]
¡û
>W1710522233
FNHA01000016
Betaproteobacteria
Janthinobacterium sp. OK676 [FNHA]
114418
114507
+
Ser
CGA
[ENA]
¡û
>W1710522234
FNHA01000016
Betaproteobacteria
Janthinobacterium sp. OK676 [FNHA]
114765
114854
+
Ser
CGA
[ENA]
¡û
>W1710530368
FNOR01000010
Betaproteobacteria
Collimonas sp. OK242 [FNOR]
2536
2447
-
Ser
CGA
[ENA]
¡û
>W1710547586
FODC01000004
Betaproteobacteria
Duganella sp. CF517 [FODC]
173386
173475
+
Ser
CGA
[ENA]
¡û
>W1710547587
FODC01000004
Betaproteobacteria
Duganella sp. CF517 [FODC]
173764
173853
+
Ser
CGA
[ENA]
¡û
>W1710556451
FOKF01000015
Betaproteobacteria
Collimonas sp. OK607 [FOKF]
82848
82937
+
Ser
CGA
[ENA]
¡û
>W1710556775
FOKL01000009
Betaproteobacteria
Janthinobacterium sp. 344 [FOKL]
18954
18865
-
Ser
CGA
[ENA]
¡û
>W1710556776
FOKL01000009
Betaproteobacteria
Janthinobacterium sp. 344 [FOKL]
18518
18429
-
Ser
CGA
[ENA]
¡û
>W1710557519
FOLC01000002
Betaproteobacteria
Collimonas sp. OK412 [FOLC]
330907
330996
+
Ser
CGA
[ENA]
¡û
>W1710564220
FOQI01000008
Betaproteobacteria
Collimonas sp. OK307 [FOQI]
241874
241963
+
Ser
CGA
[ENA]
¡û
>W1710581705
FPKH01000003
Betaproteobacteria
Janthinobacterium lividum [FPKH]
577007
576918
-
Ser
CGA
[ENA]
¡û
>W1710581706
FPKH01000003
Betaproteobacteria
Janthinobacterium lividum [FPKH]
576649
576560
-
Ser
CGA
[ENA]
¡û
>W1710596901
FTMV01000025
Betaproteobacteria
Janthinobacterium sp. TND4EL3 [FTMV]
9077
8988
-
Ser
CGA
[ENA]
¡û
>W1710596902
FTMV01000025
Betaproteobacteria
Janthinobacterium sp. TND4EL3 [FTMV]
8645
8556
-
Ser
CGA
[ENA]
¡û
>W1710720660
LFKP01000010
Betaproteobacteria
Janthinobacterium lividum [LFKP]
16450
16361
-
Ser
CGA
[ENA]
¡û
>W1710720661
LFKP01000010
Betaproteobacteria
Janthinobacterium lividum [LFKP]
16103
16014
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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