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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235925 (4 seq.)
>WENV181169851
OEIV010012130
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1725
1801
+
His
GTG
[ENA]
¡û
>WENV170956278
MJUN01013687
[MJUN] soil metagenome; viral particles from soil sample TG1
412
336
-
His
GTG
[ENA]
¡û
>W1910720079
MGCR01000020
Unclassified
Candidatus Saccharibacteria bacterium RIFCSPHIGHO2_12_FULL_42_8 [MGCR]
4363
4287
-
His
GTG
[ENA]
¡û
>W2010853505
MGCR01000020
Unclassified
Candidatus Saccharibacteria bacterium RIFCSPHIGHO2_12_FULL_42_8 [MGCR]
4363
4287
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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