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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235936 (66 seq.)
>W131211424
ATMR01000114
Bacteroidota
Winogradskyella psychrotolerans RS-3 [ATMR]
446
371
-
Lys
TTT
[ENA]
¡û
>W131211425
ATMR01000114
Bacteroidota
Winogradskyella psychrotolerans RS-3 [ATMR]
80
5
-
Lys
TTT
[ENA]
¡û
>W131224951
AUDE01000018
Bacteroidota
Psychroserpens burtonensis DSM 12212 [AUDE]
13815
13890
+
Lys
TTT
[ENA]
¡û
>WENV180383040
OBOU01000054
[OBOU] marine metagenome; ENV:00002010
10763
10690
-
Lys
TTT
[ENA]
¢þ
>WENV180383554
OBOV01000468
[OBOV] marine metagenome; ENV:00002010
3257
3184
-
Lys
TTT
[ENA]
¢þ
>WENV181322427
OFKR01007134
[OFKR] marine metagenome; sea ice
313
386
+
Lys
TTT
[ENA]
¢þ
>W08004304
ABHI01000004
Bacteroidota
Flavobacteriales bacterium ALC-1 [ABHI]
127340
127415
+
Lys
TTT
[ENA]
¡û
>WENV182556639
OJDG01027251
[OJDG] seawater metagenome; Sea water
611
538
-
Lys
TTT
[ENA]
¢þ
>WENV182561074
OJDV01003744
[OJDV] seawater metagenome; Sea water
1625
1698
+
Lys
TTT
[ENA]
¢þ
>WENV182570041
OJFB01005473
[OJFB] seawater metagenome; Sea water
158
85
-
Lys
TTT
[ENA]
¢þ
>WENV182591759
OJIO01003983
[OJIO] seawater metagenome; Sea water
3724
3797
+
Lys
TTT
[ENA]
¢þ
>W141276352
JADS01000016
Bacteroidota
Olleya sp. VCSA23 [JADS]
20019
20094
+
Lys
TTT
[ENA]
¡û
>W141276353
JADS01000016
Bacteroidota
Olleya sp. VCSA23 [JADS]
20160
20235
+
Lys
TTT
[ENA]
¡û
>W141276382
JADT01000005
Bacteroidota
Olleya sp. VCSM12 [JADT]
20310
20385
+
Lys
TTT
[ENA]
¡û
>W141276383
JADT01000005
Bacteroidota
Olleya sp. VCSM12 [JADT]
20451
20526
+
Lys
TTT
[ENA]
¡û
>WENV183616182
OOEC01138469
[OOEC] marine metagenome; sea ice
305
378
+
Lys
TTT
[ENA]
¢þ
>WENV183617129
OOEE01066623
[OOEE] marine metagenome; sea ice
231
158
-
Lys
TTT
[ENA]
¢þ
>WENV183620329
OOFR01032306
[OOFR] marine metagenome; seawater
145
218
+
Lys
TTT
[ENA]
¢þ
>WENV183628396
OOGN01032663
[OOGN] marine metagenome; sea ice
242
169
-
Lys
TTT
[ENA]
¢þ
>WENV170327282
CESU01062606
[CESU] marine metagenome genome assembly TARA_082_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
512
587
+
Lys
TTT
[ENA]
¢þ
>WENV170535737
CEWP01098843
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
224
149
-
Lys
TTT
[ENA]
¢þ
>WENV170539743
CEWR01289616
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1766
1691
-
Lys
TTT
[ENA]
¢þ
>WENV170568665
FLMP01062290
[FLMP] seawater metagenome; seawater
84
159
+
Lys
TTT
[ENA]
¢þ
>WENV170623371
FUWD013148650
[FUWD] metagenome; unknown
597
672
+
Lys
TTT
[ENA]
¢þ
>WENV170631640
FUWD013359792
[FUWD] metagenome; unknown
597
672
+
Lys
TTT
[ENA]
¢þ
>WENV170782713
MAAC01011179
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
124947
124872
-
Lys
TTT
[ENA]
¢þ
>WENV170783486
MAAC01017449
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
37440
37515
+
Lys
TTT
[ENA]
¢þ
>WENV170819813
MDSX01099653
[MDSX] marine metagenome; seawater
2032
1957
-
Lys
TTT
[ENA]
¢þ
>WENV170919730
MDTF01011764
[MDTF] marine metagenome; seawater
30140
30215
+
Lys
TTT
[ENA]
¢þ
>WENV171002575
NHNJ01088392
[NHNJ] marine metagenome; surface waters at 20 m depth at the end of the Scripps Institution of Oceanography (SIO) pier
108
33
-
Lys
TTT
[ENA]
¢þ
>C181113336
CP025117
Bacteroidota
Olleya sp. Bg11-27 [CP025117]
2152822
2152749
-
Lys
TTT
-
¡û
>C181113337
CP025117
Bacteroidota
Olleya sp. Bg11-27 [CP025117]
2152691
2152618
-
Lys
TTT
-
¡û
>C181202815
CP031612
Bacteroidota
Olleya aquimaris DAU311 [CP031612]
3355948
3355875
-
Lys
TTT
-
¡û
>C181202816
CP031612
Bacteroidota
Olleya aquimaris DAU311 [CP031612]
3355807
3355734
-
Lys
TTT
-
¡û
>C191083421
CP031963
Bacteroidota
Aquimarina sp. BL5 [CP031963]
5337953
5337880
-
Lys
TTT
-
¡û
>C191083422
CP031963
Bacteroidota
Aquimarina sp. BL5 [CP031963]
5337799
5337726
-
Lys
TTT
-
¡û
>C191166142
CP039451
Bacteroidota
Psychroserpens sp. NJDZ02 [CP039451]
143755
143828
+
Lys
TTT
-
¡û
>C191166143
CP039451
Bacteroidota
Psychroserpens sp. NJDZ02 [CP039451]
143886
143959
+
Lys
TTT
-
¡û
>W1810157333
PJBW01000005
Bacteroidota
Olleya sp. 1-3 [PJBW]
20055
20128
+
Lys
TTT
[ENA]
¡û
>W1810157334
PJBW01000005
Bacteroidota
Olleya sp. 1-3 [PJBW]
20184
20257
+
Lys
TTT
[ENA]
¡û
>W1810385502
PXOQ01000009
Bacteroidota
Aurantibacter aestuarii KCTC 32269 [PXOQ]
33874
33801
-
Lys
TTT
[ENA]
¡û
>W1810672064
QJTD01000006
Bacteroidota
Winogradskyella epiphytica CECT 7945 [QJTD]
150493
150420
-
Lys
TTT
[ENA]
¡û
>W1810672066
QJTD01000006
Bacteroidota
Winogradskyella epiphytica CECT 7945 [QJTD]
149988
149915
-
Lys
TTT
[ENA]
¡û
>W1810759616
QPJO01000003
Bacteroidota
Winogradskyella arenosi CECT 7958 [QPJO]
22957
23030
+
Lys
TTT
[ENA]
¡û
>W1810759617
QPJO01000003
Bacteroidota
Winogradskyella arenosi CECT 7958 [QPJO]
23175
23248
+
Lys
TTT
[ENA]
¡û
>W1810787632
QRDV01000007
Bacteroidota
Winogradskyella eximia CECT 7946 [QRDV]
23618
23691
+
Lys
TTT
[ENA]
¡û
>W1810787633
QRDV01000007
Bacteroidota
Winogradskyella eximia CECT 7946 [QRDV]
23963
24036
+
Lys
TTT
[ENA]
¡û
>W1810788335
QREI01000003
Bacteroidota
Winogradskyella pacifica CECT 7948 [QREI]
525224
525151
-
Lys
TTT
[ENA]
¡û
>W1810788336
QREI01000003
Bacteroidota
Winogradskyella pacifica CECT 7948 [QREI]
524857
524784
-
Lys
TTT
[ENA]
¡û
>W1810885428
QUNH01000005
Bacteroidota
Winogradskyella sediminis DSM 28134 [QUNH]
25205
25278
+
Lys
TTT
[ENA]
¡û
>W1810885429
QUNH01000005
Bacteroidota
Winogradskyella sediminis DSM 28134 [QUNH]
25542
25615
+
Lys
TTT
[ENA]
¡û
>C151002324
AP014583
Bacteroidota
Winogradskyella sp. PG-2 [AP014583]
27570
27645
+
Lys
TTT
[Ensembl]
¡û
>W1511388596
JSWG01000001
Bacteroidota
Psychroserpens jangbogonensis PAMC 27130 [JSWG]
27653
27728
+
Lys
TTT
[ENA]
¡û
>W1511432821
JUGU01000001
Bacteroidota
Psychroserpens sp. Hel_I_66 [JUGU]
1577481
1577556
+
Lys
TTT
[ENA]
¡û
>W1511505207
JXJO01000016
Bacteroidota
Psychroserpens damuponensis JCM 17632 [JXJO]
203251
203176
-
Lys
TTT
[ENA]
¡û
>W1511505238
JXJP01000008
Bacteroidota
Psychroserpens mesophilus JCM 13413 [JXJP]
20328
20401
+
Lys
TTT
[ENA]
¡û
>WENV055450
AACY023227858
Marine microbial communities from Global Ocean Sampling (GOS)
1005
928
-
Lys
TTT
[ENA]
>W1610060588
BCBW01000053
Bacteroidota
Olleya sp. ITB9 [BCBW]
2543
2618
+
Lys
TTT
[ENA]
¡û
>W1610060589
BCBW01000053
Bacteroidota
Olleya sp. ITB9 [BCBW]
2684
2759
+
Lys
TTT
[ENA]
¡û
>WENV080382
ABCO01000006
Unidentified eubacterium SCB49
197697
197620
-
Lys
TTT
[ENA]
>W1710057843
BCBW01000053
Bacteroidota
Olleya sp. ITB9 [BCBW]
2543
2618
+
Lys
TTT
[ENA]
¡û
>W1710057844
BCBW01000053
Bacteroidota
Olleya sp. ITB9 [BCBW]
2684
2759
+
Lys
TTT
[ENA]
¡û
>W1710516986
FNCZ01000002
Bacteroidota
Winogradskyella thalassocola [FNCZ]
444240
444165
-
Lys
TTT
[ENA]
¡û
>W1710516987
FNCZ01000002
Bacteroidota
Winogradskyella thalassocola [FNCZ]
443894
443819
-
Lys
TTT
[ENA]
¡û
>W1710565812
FORM01000004
Bacteroidota
Olleya namhaensis [FORM]
284886
284811
-
Lys
TTT
[ENA]
¡û
>W1710565813
FORM01000004
Bacteroidota
Olleya namhaensis [FORM]
284757
284682
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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