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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.236026 (82 seq.)
>W1710777840
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
369088
369163
+
His
GTG
[ENA]
¡û
>W1710777893
LJCF01000001
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
346015
346090
+
His
GTG
[ENA]
¡û
>W1710892070
LNDJ01000107
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
41712
41787
+
His
GTG
[ENA]
¡û
>W1710915845
LNUO01000022
Gammaproteobacteria
Psychrobacter sp. ENNN9_III [LNUO]
52057
52132
+
His
GTG
[ENA]
¡û
>W1711227884
LXWA01000053
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
47320
47395
+
His
GTG
[ENA]
¡û
>W1711303100
MAJM01000003
Gammaproteobacteria
Psychrobacter sp. B29-1 [MAJM]
359774
359849
+
His
GTG
[ENA]
¡û
>W1711682913
MRYA01000003
Gammaproteobacteria
Psychrobacter sp. Cmf 22.2 [MRYA]
411003
411078
+
His
GTG
[ENA]
¡û
>W1711682960
MRYB01000007
Gammaproteobacteria
Psychrobacter sp. Rd 27.2 [MRYB]
106096
106021
-
His
GTG
[ENA]
¡û
>W1711682985
MRYC01000001
Gammaproteobacteria
Psychrobacter sp. C 20.9 [MRYC]
44167
44092
-
His
GTG
[ENA]
¡û
>W1711766718
MUYT01000017
Gammaproteobacteria
Moraxella lincolnii [MUYT]
13974
13899
-
His
GTG
[ENA]
¡û
>C171019144
CP012969
Gammaproteobacteria
Psychrobacter sp. AntiMn-1 [CP012969]
1700508
1700433
-
His
GTG
-
¡û
>C171131056
LT799838
Gammaproteobacteria
Psychrobacter sp. DAB_AL43B [LT799838]
341362
341437
+
His
GTG
-
¡û
>W131180569
ARNF01000060
Gammaproteobacteria
Psychrobacter lutiphocae DSM 21542 [ARNF]
28806
28731
-
His
GTG
[ENA]
¡û
>C015798
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
270252
270327
+
His
GTG
[Ensembl]
¡û
>C015961
CP000323
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [CP000323]
300007
300082
+
His
GTG
[Ensembl]
¡û
>WENV180101035
OAOU01000013
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
24723
24648
-
His
GTG
[ENA]
¢þ
>w003204
AADI01000001
Gammaproteobacteria
Psychrobacter arcticus 273-4 [AADI]
394821
394744
-
His
GTG
[ENA]
¡û
>W141086188
AUSW01000032
Gammaproteobacteria
Psychrobacter aquaticus CMS 56 [AUSW]
40278
40353
+
His
GTG
[ENA]
¡û
>W141195652
AYUI01000011
Gammaproteobacteria
Psychrobacter sp. TB2 [AYUI]
66140
66215
+
His
GTG
[ENA]
¡û
>W141199946
AYXM01000038
Gammaproteobacteria
Psychrobacter sp. AC24 [AYXM]
17777
17852
+
His
GTG
[ENA]
¡û
>W141199991
AYXN01000017
Gammaproteobacteria
Psychrobacter sp. TB15 [AYXN]
66140
66215
+
His
GTG
[ENA]
¡û
>W141200516
AYXZ01000085
Gammaproteobacteria
Psychrobacter sp. TB47 [AYXZ]
72912
72837
-
His
GTG
[ENA]
¡û
>W141200568
AYYA01000044
Gammaproteobacteria
Psychrobacter sp. TB67 [AYYA]
166696
166621
-
His
GTG
[ENA]
¡û
>C08007195
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
270252
270327
+
His
GTG
[Ensembl]
¡û
>W141233963
BAWG01000001
Gammaproteobacteria
Psychrobacter sp. JCM 18900 [BAWG]
398465
398540
+
His
GTG
[ENA]
¡û
>W141234004
BAWH01000004
Gammaproteobacteria
Psychrobacter sp. JCM 18901 [BAWH]
113621
113696
+
His
GTG
[ENA]
¡û
>W141234036
BAWI01000001
Gammaproteobacteria
Psychrobacter sp. JCM 18902 [BAWI]
375968
376043
+
His
GTG
[ENA]
¡û
>W141234090
BAWJ01000005
Gammaproteobacteria
Psychrobacter sp. JCM 18903 [BAWJ]
31909
31834
-
His
GTG
[ENA]
¡û
>WENV182542153
OJAV01005937
[OJAV] seawater metagenome; Sea water
628
703
+
His
GTG
[ENA]
¢þ
>WENV182549759
OJBZ01000001
[OJBZ] seawater metagenome; Sea water
199911
199836
-
His
GTG
[ENA]
¢þ
>WENV182562348
OJDZ01001194
[OJDZ] seawater metagenome; Sea water
4188
4113
-
His
GTG
[ENA]
¢þ
>WENV170014630
AYSL01001568
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
3156
3231
+
His
GTG
[ENA]
¢þ
>WENV170121544
CENM01039698
[CENM] marine metagenome genome assembly TARA_032_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2832
2757
-
His
GTG
[ENA]
¢þ
>WENV170563226
CZCB01012178
[CZCB] anaerobic digester metagenome; anaerobic digester
829
754
-
His
GTG
[ENA]
¢þ
>WENV170579050
FUFK010037828
[FUFK] metagenome; unknown
24876
24801
-
His
GTG
[ENA]
¢þ
>WENV170581720
FUFK010066801
[FUFK] metagenome; unknown
2240
2315
+
His
GTG
[ENA]
¢þ
>WENV170583935
FUFK010176131
[FUFK] metagenome; unknown
1834
1759
-
His
GTG
[ENA]
¢þ
>WENV170586333
FUFK010398066
[FUFK] metagenome; unknown
5
80
+
His
GTG
[ENA]
¢þ
>WENV170590986
FUFK010746817
[FUFK] metagenome; unknown
4503
4428
-
His
GTG
[ENA]
¢þ
>WENV170793925
MDSV01124168
[MDSV] marine metagenome; seawater
1819
1744
-
His
GTG
[ENA]
¢þ
>C181056040
CP022043
Gammaproteobacteria
Psychrobacter cryohalolentis FDAARGOS_308 [CP022043]
2063429
2063504
+
His
GTG
-
¡û
>C191163859
CP039251
Gammaproteobacteria
Psychrobacter sp. PAMC27889 [CP039251]
2899440
2899365
-
His
GTG
-
¡û
>W09103307
AAJC01000004
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [AAJC]
24618
24693
+
His
GTG
[ENA]
¡û
>W141701348
JMKP01000013
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 [JMKP]
49776
49701
-
His
GTG
[ENA]
¡û
>W1910372477
FUGD01000060
Gammaproteobacteria
Psychrobacter pasteurii CIP 110853 [FUGD]
39582
39657
+
His
GTG
[ENA]
¡û
>W1910372515
FUGE01000054
Gammaproteobacteria
Psychrobacter piechaudii CIP 110854 [FUGE]
6504
6429
-
His
GTG
[ENA]
¡û
>W1910377612
FUKN01000014
Gammaproteobacteria
Psychrobacter sp. JB385 [FUKN]
433619
433694
+
His
GTG
[ENA]
¡û
>W1910891628
NEXR01000001
Gammaproteobacteria
Psychrobacter sp. L7 [NEXR]
396142
396217
+
His
GTG
[ENA]
¡û
>W1910891770
NEXU01000051
Gammaproteobacteria
Psychrobacter sp. DAB_AL32B [NEXU]
12565
12640
+
His
GTG
[ENA]
¡û
>W1911203653
NRGY01000001
Gammaproteobacteria
Psychrobacter sp. JB193 [NRGY]
1345673
1345598
-
His
GTG
[ENA]
¡û
>W1911397570
NWFK02000001
Gammaproteobacteria
Psychrobacter sp. FDAARGOS_221 [NWFK]
2325305
2325380
+
His
GTG
[ENA]
¡û
>W1911534864
OLML01000001
Gammaproteobacteria
Psychrobacter sp. Marseille-P5312 [OLML]
1483854
1483929
+
His
GTG
[ENA]
¡û
>W1810155458
PJAS01000052
Gammaproteobacteria
Psychrobacter sp. 4Bb [PJAS]
87293
87218
-
His
GTG
[ENA]
¡û
>W1810155505
PJAT01000092
Gammaproteobacteria
Psychrobacter sp. 4Dc [PJAT]
238
163
-
His
GTG
[ENA]
¡û
>W1810156169
PJBD01000007
Gammaproteobacteria
Psychrobacter sp. Choline-02u-13 [PJBD]
56837
56912
+
His
GTG
[ENA]
¡û
>W1810156337
PJBF01000058
Gammaproteobacteria
Psychrobacter sp. Choline-02u-9 [PJBF]
127869
127944
+
His
GTG
[ENA]
¡û
>W1810156433
PJBH01000062
Gammaproteobacteria
Psychrobacter sp. Choline-3u-12 [PJBH]
23991
24066
+
His
GTG
[ENA]
¡û
>W1810157274
PJBU01000114
Gammaproteobacteria
Psychrobacter sp. MES7-P7E [PJBU]
76385
76460
+
His
GTG
[ENA]
¡û
>W1810157379
PJBX01000159
Gammaproteobacteria
Psychrobacter sp. Sarcosine-02u-2 [PJBX]
65544
65619
+
His
GTG
[ENA]
¡û
>W1810157414
PJBY01000067
Gammaproteobacteria
Psychrobacter sp. Sarcosine-3u-12 [PJBY]
35097
35172
+
His
GTG
[ENA]
¡û
>W1810596405
QGGM01000007
Gammaproteobacteria
Psychrobacter immobilis DSM 7229 [QGGM]
118225
118300
+
His
GTG
[ENA]
¡û
>W1810671419
QJSU01000001
Gammaproteobacteria
Psychrobacter fozii CECT 5889 [QJSU]
254724
254649
-
His
GTG
[ENA]
¡û
>W1810692677
QLKS01000003
Gammaproteobacteria
Psychrobacter proteolyticus HAMBI_2948 [QLKS]
229548
229473
-
His
GTG
[ENA]
¡û
>C151097227
CP012678
Gammaproteobacteria
Psychrobacter urativorans R10.10B [CP012678]
1788619
1788694
+
His
GTG
-
¡û
>C161042727
CP012529
Gammaproteobacteria
Psychrobacter sp. P2G3 [CP012529]
356500
356575
+
His
GTG
-
¡û
>C161042775
CP012533
Gammaproteobacteria
Psychrobacter sp. P11G5 [CP012533]
345135
345210
+
His
GTG
[Ensembl]
¡û
>C161079255
CP014945
Gammaproteobacteria
Psychrobacter alimentarius PAMC 27889 [CP014945]
342072
342147
+
His
GTG
[Ensembl]
¡û
>W121043485
AHVZ01000003
Gammaproteobacteria
Psychrobacter sp. PAMC 21119 [AHVZ]
62215
62140
-
His
GTG
[ENA]
¡û
>W1610071744
BCUH01000020
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152 [BCUH]
5307
5382
+
His
GTG
[ENA]
¡û
>W1610112400
CZJV02000092
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
82500
82575
+
His
GTG
[ENA]
¡û
>C131017371
CP006265
Gammaproteobacteria
Psychrobacter sp. G [CP006265]
300869
300944
+
His
GTG
[Ensembl]
¡û
>W1610632725
LIQB01000001
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
135156
135081
-
His
GTG
[ENA]
¡û
>W1610642026
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
369088
369163
+
His
GTG
[ENA]
¡û
>W1610642079
LJCF01000001
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
346015
346090
+
His
GTG
[ENA]
¡û
>W1610752336
LNDJ01000107
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
41712
41787
+
His
GTG
[ENA]
¡û
>W1610774084
LNUO01000022
Gammaproteobacteria
Psychrobacter sp. ENNN9_III [LNUO]
52057
52132
+
His
GTG
[ENA]
¡û
>W1611011848
LXWA01000053
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
47320
47395
+
His
GTG
[ENA]
¡û
>W1611029984
LZDQ01000028
Gammaproteobacteria
Moraxella osloensis [LZDQ]
9089
9014
-
His
GTG
[ENA]
¡û
>W1710068946
BCUH01000020
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152 [BCUH]
5307
5382
+
His
GTG
[ENA]
¡û
>W1710115104
CZJV02000092
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
82500
82575
+
His
GTG
[ENA]
¡û
>W1710513790
FNAL01000001
Gammaproteobacteria
Psychrobacter pacificensis [FNAL]
107964
108039
+
His
GTG
[ENA]
¡û
>W1710767157
LIQB01000001
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
135156
135081
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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