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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.236034 (36 seq.)
>W1710777848
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
1835910
1835985
+
Arg
CCT
[ENA]
¡û
>W1710892064
LNDJ01000069
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
2350
2275
-
Arg
CCT
[ENA]
¡û
>W1711227874
LXWA01000033
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
39377
39452
+
Arg
CCT
[ENA]
¡û
>W1711683006
MRYC01000011
Gammaproteobacteria
Psychrobacter sp. C 20.9 [MRYC]
56414
56339
-
Arg
CCT
[ENA]
¡û
>C171019153
CP012969
Gammaproteobacteria
Psychrobacter sp. AntiMn-1 [CP012969]
435589
435514
-
Arg
CCT
-
¡û
>C171131066
LT799838
Gammaproteobacteria
Psychrobacter sp. DAB_AL43B [LT799838]
1703725
1703800
+
Arg
CCT
-
¡û
>C015808
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
1353903
1353978
+
Arg
CCT
[Ensembl]
¡û
>C015993
CP000323
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [CP000323]
1565834
1565759
-
Arg
CCT
[Ensembl]
¡û
>WENV180101068
OAOU01000126
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
14100
14175
+
Arg
CCT
[ENA]
¢þ
>w003214
AADI01000002
Gammaproteobacteria
Psychrobacter arcticus 273-4 [AADI]
374125
374048
-
Arg
CCT
[ENA]
¡û
>W141195682
AYUI01000047
Gammaproteobacteria
Psychrobacter sp. TB2 [AYUI]
187086
187011
-
Arg
CCT
[ENA]
¡û
>W141200013
AYXN01000041
Gammaproteobacteria
Psychrobacter sp. TB15 [AYXN]
187081
187006
-
Arg
CCT
[ENA]
¡û
>C08007205
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
1353903
1353978
+
Arg
CCT
[Ensembl]
¡û
>W141234104
BAWJ01000014
Gammaproteobacteria
Psychrobacter sp. JCM 18903 [BAWJ]
43156
43081
-
Arg
CCT
[ENA]
¡û
>WENV170014749
AYSL01008994
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
1373
1298
-
Arg
CCT
[ENA]
¢þ
>WENV170121527
CENM01039247
[CENM] marine metagenome genome assembly TARA_032_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1994
1919
-
Arg
CCT
[ENA]
¢þ
>WENV170243630
CEQO01163233
[CEQO] marine metagenome genome assembly TARA_078_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1091
1016
-
Arg
CCT
[ENA]
¢þ
>WENV170488035
CEVO01116303
[CEVO] marine metagenome genome assembly TARA_152_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1846
1921
+
Arg
CCT
[ENA]
¢þ
>WENV170539383
CEWR01193352
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
263
188
-
Arg
CCT
[ENA]
¢þ
>WENV170563188
CZCB01011595
[CZCB] anaerobic digester metagenome; anaerobic digester
826
901
+
Arg
CCT
[ENA]
¢þ
>WENV170581353
FUFK010061614
[FUFK] metagenome; unknown
15623
15548
-
Arg
CCT
[ENA]
¢þ
>WENV170594870
FUFK011512015
[FUFK] metagenome; unknown
184
259
+
Arg
CCT
[ENA]
¢þ
>WENV170824497
MDSY01077175
[MDSY] marine metagenome; seawater
3419
3494
+
Arg
CCT
[ENA]
¢þ
>C181056070
CP022043
Gammaproteobacteria
Psychrobacter cryohalolentis FDAARGOS_308 [CP022043]
263258
263183
-
Arg
CCT
-
¡û
>W09103304
AAJC01000003
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [AAJC]
119384
119459
+
Arg
CCT
[ENA]
¡û
>W1911397546
NWFK02000001
Gammaproteobacteria
Psychrobacter sp. FDAARGOS_221 [NWFK]
311543
311618
+
Arg
CCT
[ENA]
¡û
>W1810157371
PJBX01000140
Gammaproteobacteria
Psychrobacter sp. Sarcosine-02u-2 [PJBX]
3341
3266
-
Arg
CCT
[ENA]
¡û
>W1810596388
QGGM01000002
Gammaproteobacteria
Psychrobacter immobilis DSM 7229 [QGGM]
51753
51678
-
Arg
CCT
[ENA]
¡û
>W1610112419
CZJV02000123
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
195468
195393
-
Arg
CCT
[ENA]
¡û
>W1610632758
LIQB01000012
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
41283
41208
-
Arg
CCT
[ENA]
¡û
>W1610642034
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
1835910
1835985
+
Arg
CCT
[ENA]
¡û
>W1610752330
LNDJ01000069
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
2350
2275
-
Arg
CCT
[ENA]
¡û
>W1611011838
LXWA01000033
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
39377
39452
+
Arg
CCT
[ENA]
¡û
>W1710115123
CZJV02000123
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
195468
195393
-
Arg
CCT
[ENA]
¡û
>W1710513820
FNAL01000017
Gammaproteobacteria
Psychrobacter pacificensis [FNAL]
14460
14385
-
Arg
CCT
[ENA]
¡û
>W1710767190
LIQB01000012
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
41283
41208
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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