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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.236044 (112 seq.)
>W1711046888
LROR01000023
Bacillota
Clostridium coskatii [LROR]
48810
48885
+
Met
CAT
[ENA]
¡û
>W1711046891
LROR01000023
Bacillota
Clostridium coskatii [LROR]
49087
49162
+
Met
CAT
[ENA]
¡û
>W1711046965
LROS01000005
Bacillota
Clostridium ragsdalei P11 [LROS]
16657
16582
-
Met
CAT
[ENA]
¡û
>W1711046968
LROS01000005
Bacillota
Clostridium ragsdalei P11 [LROS]
16380
16305
-
Met
CAT
[ENA]
¡û
>W1711078525
LSMZ01000006
Bacillota
Clostridium sp. link-BC1 [LSMZ]
110883
110958
+
Met
CAT
[ENA]
¡û
>W1711222530
LXSB01000001
Bacillota
Clostridium sp. Bc-iso-3 [LXSB]
3558778
3558853
+
Met
CAT
[ENA]
¡û
>W131108934
APGP01000030
Bacillota
Caldicellulosiruptor sp. F32 [APGP]
175228
175153
-
Met
CAT
[ENA]
¡û
>W131218315
ATXO01000013
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
4503
4428
-
Met
CAT
[ENA]
¡û
>W131219103
ATYG01000038
Bacillota
Carboxydothermus ferrireducens DSM 11255 [ATYG]
1648
1573
-
Met
CAT
[ENA]
¡û
>C005900
CP000141
Bacillota
Carboxydothermus hydrogenoformans Z-2901 [CP000141]
2090975
2090900
-
Met
CAT
[Ensembl]
¡û
>C006921
CP000679
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [CP000679]
2324141
2324066
-
Met
CAT
[Ensembl]
¡û
>WENV180168664
OAVR01011022
[OAVR] human gut metagenome; faeces
3
78
+
fMet
CAT
[ENA]
¢þ
>WENV180783910
ODIQ01046713
[ODIQ] human metagenome; G_DNA_Tongue dorsum
245
320
+
fMet
CAT
[ENA]
¢þ
>WENV180831428
ODKB01169408
[ODKB] human metagenome; G_DNA_Tongue dorsum
164
89
-
fMet
CAT
[ENA]
¢þ
>WENV180897934
ODNI01137375
[ODNI] human metagenome; G_DNA_Tongue dorsum
129
204
+
fMet
CAT
[ENA]
¢þ
>WENV181075047
OEAO01059571
[OEAO] human metagenome; G_DNA_Tongue dorsum
338
263
-
fMet
CAT
[ENA]
¢þ
>WENV181075121
OEAO01072897
[OEAO] human metagenome; G_DNA_Tongue dorsum
188
263
+
fMet
CAT
[ENA]
¢þ
>WENV181075138
OEAO01075225
[OEAO] human metagenome; G_DNA_Tongue dorsum
188
263
+
fMet
CAT
[ENA]
¢þ
>WENV181075329
OEAO01128240
[OEAO] human metagenome; G_DNA_Tongue dorsum
84
9
-
fMet
CAT
[ENA]
¢þ
>WENV181226048
OFDK01000009
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
211
286
+
fMet
CAT
[ENA]
¢þ
>WENV181226107
OFDK01000048
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
12892
12817
-
fMet
CAT
[ENA]
¢þ
>WENV181285458
OFGS01000528
[OFGS] hot springs metagenome; Water and soil
3887
3962
+
fMet
CAT
[ENA]
¢þ
>WENV181337894
OFMF01000066
[OFMF] human gut metagenome; human gut
22308
22383
+
fMet
CAT
[ENA]
¢þ
>WENV181340778
OFMH01001495
[OFMH] human gut metagenome; human gut
11167
11092
-
fMet
CAT
[ENA]
¢þ
>WENV181341418
OFMI01000003
[OFMI] human gut metagenome; human gut
206336
206261
-
fMet
CAT
[ENA]
¢þ
>WENV181408652
OGCH01007511
[OGCH] hot springs metagenome; hot springs
2272
2347
+
fMet
CAT
[ENA]
¢þ
>WENV181734023
OGQF01000015
[OGQF] human gut metagenome; faeces
26079
26154
+
fMet
CAT
[ENA]
¢þ
>W141212294
AZQP01000140
Bacillota
Fervidicella metallireducens AeB [AZQP]
313
388
+
Met
CAT
[ENA]
¡û
>WENV182464415
OIOI01000184
[OIOI] human gut metagenome; human gut
5318
5243
-
fMet
CAT
[ENA]
¢þ
>W141244602
CAKP01000114
Bacillota
Caloramator australicus RC3 [CAKP]
21784
21709
-
Met
CAT
[ENA]
¡û
>C08005386
CP000930
Bacillota
Heliomicrobium modesticaldum Ice1 Ice1; ATCC 51547 [CP000930]
1285509
1285584
+
Met
CAT
[Ensembl]
¡û
>WENV182692953
OJOG01025704
[OJOG] human gut metagenome; stool sample
91
166
+
fMet
CAT
[ENA]
¢þ
>WENV182892040
OKSH01012776
[OKSH] human gut metagenome; faeces
311
236
-
fMet
CAT
[ENA]
¢þ
>WENV183103561
OLNJ01001240
[OLNJ] human gut metagenome; faeces
2427
2502
+
fMet
CAT
[ENA]
¢þ
>C191065541
CP029758
Bacillota
Clostridium sp. AWRP [CP029758]
4394154
4394079
-
Met
CAT
-
¡û
>C191065544
CP029758
Bacillota
Clostridium sp. AWRP [CP029758]
4393877
4393802
-
Met
CAT
-
¡û
>C191131107
CP034791
Bacillota
Caldicellulosiruptor changbaiensis CBS-Z [CP034791]
1091332
1091407
+
Met
CAT
-
¡û
>C191174935
CP040093
Bacillota
Caloramator sp. E03 [CP040093]
1751326
1751401
+
Met
CAT
-
¡û
>W09104557
AALW01000063
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [AALW]
462
387
-
Met
CAT
[ENA]
¡û
>W09113802
ABYZ01000002
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
233652
233727
+
Met
CAT
[ENA]
¡û
>C141008114
CP006763
Bacillota
Clostridium autoethanogenum DSM 10061 [CP006763]
2135466
2135391
-
Met
CAT
[Ensembl]
¡û
>C141008117
CP006763
Bacillota
Clostridium autoethanogenum DSM 10061 [CP006763]
2135189
2135114
-
Met
CAT
[Ensembl]
¡û
>C09100857
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
1603610
1603535
-
Met
CAT
[Ensembl]
¡û
>W1911155362
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
1783986
1783911
-
Met
CAT
[ENA]
¡û
>W1911244054
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
941441
941366
-
Met
CAT
[ENA]
¡û
>W1911244102
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
1320928
1320853
-
Met
CAT
[ENA]
¡û
>W1911244143
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
1873893
1873818
-
Met
CAT
[ENA]
¡û
>W1911244179
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
1217249
1217324
+
Met
CAT
[ENA]
¡û
>W1911244212
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
626203
626278
+
Met
CAT
[ENA]
¡û
>W1911572542
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
1155425
1155500
+
Met
CAT
[ENA]
¡û
>W1911572596
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
2580268
2580193
-
Met
CAT
[ENA]
¡û
>W1911572637
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
1258410
1258485
+
Met
CAT
[ENA]
¡û
>W1810052247
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
712458
712533
+
Met
CAT
[ENA]
¡û
>W1810071895
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
1201517
1201592
+
Met
CAT
[ENA]
¡û
>W1810071944
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
2219260
2219335
+
Met
CAT
[ENA]
¡û
>W1810071998
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
2506326
2506251
-
Met
CAT
[ENA]
¡û
>W1810367560
PVXP01000063
Bacillota
Clostridium luticellarii DSM 29923 [PVXP]
16713
16638
-
Met
CAT
[ENA]
¡û
>W1810367561
PVXP01000063
Bacillota
Clostridium luticellarii DSM 29923 [PVXP]
16445
16370
-
Met
CAT
[ENA]
¡û
>W1810368023
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
2369365
2369290
-
Met
CAT
[ENA]
¡û
>C10103585
CP001666
Bacillota
Clostridium ljungdahlii DSM 13528 [CP001666]
4502814
4502739
-
Met
CAT
[Ensembl]
¡û
>C10103588
CP001666
Bacillota
Clostridium ljungdahlii DSM 13528 [CP001666]
4502537
4502462
-
Met
CAT
[Ensembl]
¡û
>C10103642
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
1155227
1155302
+
Met
CAT
[Ensembl]
¡û
>C11105212
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
1250005
1250080
+
Met
CAT
[Ensembl]
¡û
>C11105404
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
1595181
1595106
-
Met
CAT
[Ensembl]
¡û
>C11105437
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
1368316
1368391
+
Met
CAT
[Ensembl]
¡û
>C11105498
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
989196
989121
-
Met
CAT
[Ensembl]
¡û
>C11105879
CP002216
Bacillota
Caldicellulosiruptor owensensis OL [CP002216]
1381305
1381230
-
Met
CAT
[Ensembl]
¡û
>W1511345232
JRGH01000003
Bacillota
Clostridium tetani ATCC 9441 [JRGH]
16311
16236
-
Met
CAT
[ENA]
¡û
>W1511345235
JRGH01000003
Bacillota
Clostridium tetani ATCC 9441 [JRGH]
16031
15956
-
Met
CAT
[ENA]
¡û
>W1511345290
JRGI01000007
Bacillota
Clostridium tetani ATCC 453 [JRGI]
113948
114023
+
Met
CAT
[ENA]
¡û
>W1511345293
JRGI01000007
Bacillota
Clostridium tetani ATCC 453 [JRGI]
114228
114303
+
Met
CAT
[ENA]
¡û
>W11139371
AEKB01000001
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [AEKB]
118441
118366
-
Met
CAT
[ENA]
¡û
>W11139441
AEKC01000047
Bacillota
Caldicellulosiruptor acetigenus 177R1B [AEKC]
8699
8774
+
Met
CAT
[ENA]
¡û
>W11139491
AEKD01000073
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
2299
2374
+
Met
CAT
[ENA]
¡û
>W1511563972
LACM01000001
Bacillota
Caldicellulosiruptor danielii Wai35.B1 [LACM]
1772098
1772023
-
Met
CAT
[ENA]
¡û
>W1511564008
LACN01000006
Bacillota
Caldicellulosiruptor naganoensis NA10 [LACN]
488606
488531
-
Met
CAT
[ENA]
¡û
>W1511564053
LACO01000001
Bacillota
Caldicellulosiruptor morganii Rt8.B8 [LACO]
1192559
1192634
+
Met
CAT
[ENA]
¡û
>C161021533
CP009557
Bacillota
Clostridium perfringens FORC_003 [CP009557]
3129556
3129481
-
Met
CAT
-
¡û
>C161021536
CP009557
Bacillota
Clostridium perfringens FORC_003 [CP009557]
3129288
3129213
-
Met
CAT
-
¡û
>C161041776
CP012395
Bacillota
Clostridium autoethanogenum DSM 10061 [CP012395]
2135584
2135509
-
Met
CAT
-
¡û
>C161041779
CP012395
Bacillota
Clostridium autoethanogenum DSM 10061 [CP012395]
2135307
2135232
-
Met
CAT
-
¡û
>W1610101801
CYZX01000024
Bacillota
Clostridium disporicum [CYZX]
58752
58677
-
Met
CAT
[ENA]
¡û
>W1610635708
LITQ01000030
Bacillota
Clostridium coskatii [LITQ]
17107
17032
-
Met
CAT
[ENA]
¡û
>W1610635711
LITQ01000030
Bacillota
Clostridium coskatii [LITQ]
16830
16755
-
Met
CAT
[ENA]
¡û
>W1610635767
LITS01000022
Bacillota
Clostridium ljungdahlii DSM 13528 [LITS]
85999
86074
+
Met
CAT
[ENA]
¡û
>W1610635770
LITS01000022
Bacillota
Clostridium ljungdahlii DSM 13528 [LITS]
86276
86351
+
Met
CAT
[ENA]
¡û
>W1610635852
LITT01000063
Bacillota
Clostridium ljungdahlii [LITT]
17354
17279
-
Met
CAT
[ENA]
¡û
>W1610635855
LITT01000063
Bacillota
Clostridium ljungdahlii [LITT]
17077
17002
-
Met
CAT
[ENA]
¡û
>W1610888017
LROR01000023
Bacillota
Clostridium coskatii [LROR]
48810
48885
+
Met
CAT
[ENA]
¡û
>W1610888020
LROR01000023
Bacillota
Clostridium coskatii [LROR]
49087
49162
+
Met
CAT
[ENA]
¡û
>W1610888094
LROS01000005
Bacillota
Clostridium ragsdalei P11 [LROS]
16657
16582
-
Met
CAT
[ENA]
¡û
>W1610888097
LROS01000005
Bacillota
Clostridium ragsdalei P11 [LROS]
16380
16305
-
Met
CAT
[ENA]
¡û
>W1710083562
BDJK01000030
Bacillota
Carboxydothermus pertinax [BDJK]
536
461
-
Met
CAT
[ENA]
¡û
>W1710083591
BDJL01000005
Bacillota
Carboxydothermus islandicus [BDJL]
665
590
-
Met
CAT
[ENA]
¡û
>W1710104556
CYZX01000024
Bacillota
Clostridium disporicum [CYZX]
58752
58677
-
Met
CAT
[ENA]
¡û
>W1710538253
FNUK01000011
Bacillota
Caloramator fervidus [FNUK]
57224
57299
+
Met
CAT
[ENA]
¡û
>W1710603745
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
1700123
1700198
+
Met
CAT
[ENA]
¡û
>W1710603843
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
757157
757082
-
Met
CAT
[ENA]
¡û
>W1710603930
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
1703993
1703918
-
Met
CAT
[ENA]
¡û
>W1710605093
FWDH01000001
Bacillota
Caldicellulosiruptor bescii [FWDH]
769116
769041
-
Met
CAT
[ENA]
¡û
>W1710609667
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
1618766
1618841
+
Met
CAT
[ENA]
¡û
>W1710609705
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
1019917
1019992
+
Met
CAT
[ENA]
¡û
>W1710609774
FXXE01000001
Bacillota
Caldicellulosiruptor bescii [FXXE]
1875548
1875473
-
Met
CAT
[ENA]
¡û
>W1710609820
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
1868090
1868015
-
Met
CAT
[ENA]
¡û
>W1710770416
LITQ01000030
Bacillota
Clostridium coskatii [LITQ]
17107
17032
-
Met
CAT
[ENA]
¡û
>W1710770419
LITQ01000030
Bacillota
Clostridium coskatii [LITQ]
16830
16755
-
Met
CAT
[ENA]
¡û
>W1710770473
LITR01000012
Bacillota
Clostridium autoethanogenum [LITR]
136062
136137
+
Met
CAT
[ENA]
¡û
>W1710770476
LITR01000012
Bacillota
Clostridium autoethanogenum [LITR]
136339
136414
+
Met
CAT
[ENA]
¡û
>W1710770540
LITS01000022
Bacillota
Clostridium ljungdahlii DSM 13528 [LITS]
85999
86074
+
Met
CAT
[ENA]
¡û
>W1710770543
LITS01000022
Bacillota
Clostridium ljungdahlii DSM 13528 [LITS]
86276
86351
+
Met
CAT
[ENA]
¡û
>W1710770625
LITT01000063
Bacillota
Clostridium ljungdahlii [LITT]
17354
17279
-
Met
CAT
[ENA]
¡û
>W1710770628
LITT01000063
Bacillota
Clostridium ljungdahlii [LITT]
17077
17002
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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