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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.236064 (49 seq.)
>W1710875581
LMOM01000098
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
45869
45944
+
Phe
GAA
[ENA]
¡û
>W131104587
APCS01000075
Deinococcota
Deinococcus wulumuqiensis R12 [APCS]
5711
5636
-
Phe
GAA
[ENA]
¡û
>W131178653
ARLS01000045
Deinococcota
Deinococcus apachensis DSM 19763 [ARLS]
49334
49259
-
Phe
GAA
[ENA]
¡û
>W131213907
ATTJ01000001
Deinococcota
Deinococcus ficus 2009 [ATTJ]
1092316
1092241
-
Phe
GAA
[ENA]
¡û
>W131237103
AUMV01000008
Deinococcota
Deinococcus ficus DSM 19119 [AUMV]
67146
67221
+
Phe
GAA
[ENA]
¡û
>W1711743911
MUFV01000001
Deinococcota
Deinococcus sp. LM3 [MUFV]
1345895
1345970
+
Phe
GAA
[ENA]
¡û
>W1712080685
NHMK01000031
Deinococcota
Deinococcus indicus [NHMK]
58344
58419
+
Phe
GAA
[ENA]
¡û
>C007721
CP000359
Deinococcota
Deinococcus geothermalis DSM 11300 [CP000359]
177691
177766
+
Phe
GAA
[Ensembl]
¡û
>C007977
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
22010
21935
-
Phe
GAA
[Ensembl]
¡û
>WENV180232263
OBCO01000248
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
62708
62783
+
Phe
GAA
[ENA]
¢þ
>WENV180233242
OBCP01000233
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
62708
62783
+
Phe
GAA
[ENA]
¢þ
>WENV180569626
OCLR01000242
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
62708
62783
+
Phe
GAA
[ENA]
¢þ
>WENV180570691
OCLS01000416
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
10496
10421
-
Phe
GAA
[ENA]
¢þ
>WENV180571610
OCLT01000235
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
62708
62783
+
Phe
GAA
[ENA]
¢þ
>WENV180573856
OCLW01000233
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
62708
62783
+
Phe
GAA
[ENA]
¢þ
>WENV180640033
OCRL01000348
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
29065
29140
+
Phe
GAA
[ENA]
¢þ
>WENV180640871
OCRM01000243
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
62708
62783
+
Phe
GAA
[ENA]
¢þ
>W141154761
AXLL01000027
Deinococcota
Deinococcus wulumuqiensis R13 [AXLL]
17100
17175
+
Phe
GAA
[ENA]
¡û
>W141169938
AXWT01000029
Deinococcota
Deinococcus murrayi DSM 11303 [AXWT]
11517
11592
+
Phe
GAA
[ENA]
¡û
>WENV183636464
OOKD01004082
[OOKD] human gut metagenome; Skin biopsy
1184
1109
-
Phe
GAA
[ENA]
¢þ
>C181134281
CP026516
Deinococcota
Deinococcus sp. NW-56 [CP026516]
173000
173075
+
Phe
GAA
-
¡û
>C181185095
CP029774
Deinococcota
Deinococcus actinosclerus SJTR [CP029774]
3242878
3242953
+
Phe
GAA
-
¡û
>C181196473
CP031158
Deinococcota
Deinococcus wulumuqiensis NEB 479 [CP031158]
2237347
2237272
-
Phe
GAA
-
¡û
>C191018431
CP021081
Deinococcota
Deinococcus ficus CC-FR2-10 [CP021081]
94433
94508
+
Phe
GAA
-
¡û
>W141525664
JHAC01000004
Deinococcota
Deinococcus phoenicis [JHAC]
20428
20503
+
Phe
GAA
[ENA]
¡û
>W141561481
JHYL01000015
Deinococcota
Deinococcus radiodurans ATCC 13939 [JHYL]
62900
62975
+
Phe
GAA
[ENA]
¡û
>W09101986
AAHE01000002
Deinococcota
Deinococcus geothermalis DSM 11300 [AAHE]
64491
64566
+
Phe
GAA
[ENA]
¡û
>W141702087
JMLF01000034
Deinococcota
Deinococcus radiodurans DSM 20539 [JMLF]
7468
7543
+
Phe
GAA
[ENA]
¡û
>W141711937
JMQF01000022
Deinococcota
Deinococcus sp. RL [JMQF]
16123
16048
-
Phe
GAA
[ENA]
¡û
>W141821132
JQNI01000002
Deinococcota
Deinococcus sp. YIM 77859 [JQNI]
1691684
1691609
-
Phe
GAA
[ENA]
¡û
>C09103878
CP001114
Deinococcota
Deinococcus deserti VCD115 [CP001114]
34605
34680
+
Phe
GAA
[Ensembl]
¡û
>W1911597473
PNOR01000006
Deinococcota
Deinococcus planocerae XY-FW106 [PNOR]
30625
30550
-
Phe
GAA
[ENA]
¡û
>W1911788255
QYCQ01000010
Deinococcota
Deinococcus sp. RM [QYCQ]
6034
6109
+
Phe
GAA
[ENA]
¡û
>W1911802516
QYUJ01000014
Deinococcota
Deinococcus cavernae K2S05-167 [QYUJ]
2037712
2037637
-
Phe
GAA
[ENA]
¡û
>W1810003557
BFAG01000013
Deinococcota
Deinococcus aerius TR0125 [BFAG]
74014
73939
-
Phe
GAA
[ENA]
¡û
>W1810238321
PPPD01000001
Deinococcota
Deinococcus koreensis SJW1-2 [PPPD]
2094022
2094097
+
Phe
GAA
[ENA]
¡û
>W1810423348
PYSV01000011
Deinococcota
Deinococcus arcticus OD32 [PYSV]
87243
87168
-
Phe
GAA
[ENA]
¡û
>C151081889
CP011389
Deinococcota
Deinococcus soli [ex Cha et al. 2016] N5 [CP011389]
1742042
1742117
+
Phe
GAA
[Ensembl]
¡û
>C10105379
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
22010
21935
-
Phe
GAA
[Ensembl]
¡û
>C11107306
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
22010
21935
-
Phe
GAA
[Ensembl]
¡û
>C161061600
CP013910
Deinococcota
Deinococcus actinosclerus BM2 [CP013910]
3187721
3187796
+
Phe
GAA
[Ensembl]
¡û
>C161082952
CP015081
Deinococcota
Deinococcus radiodurans R1 [CP015081, CP015082]
55778
55853
+
Phe
GAA
-
¡û
>W1610061611
BCMS01000001
Deinococcota
Deinococcus grandis [BCMS]
146402
146327
-
Phe
GAA
[ENA]
¡û
>W1610638990
LIYN01000243
Deinococcota
Deinococcus sp. UR1 [LIYN]
9491
9416
-
Phe
GAA
[ENA]
¡û
>W1610737927
LMOM01000098
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
45869
45944
+
Phe
GAA
[ENA]
¡û
>W1710059276
BCMS01000001
Deinococcota
Deinococcus grandis [BCMS]
146402
146327
-
Phe
GAA
[ENA]
¡û
>W1710542300
FNZA01000039
Deinococcota
Deinococcus reticulitermitis [FNZA]
3647
3572
-
Phe
GAA
[ENA]
¡û
>W1710605307
FWWU01000009
Deinococcota
Deinococcus hopiensis KR-140 [FWWU]
174352
174427
+
Phe
GAA
[ENA]
¡û
>W1710774884
LIYN01000243
Deinococcota
Deinococcus sp. UR1 [LIYN]
9491
9416
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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