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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.236095 (118 seq.)
>W1710792805
LJOP01000088
Cyanobacteriota
Anabaena sp. LE011-02 39865 [LJOP]
12575
12647
+
Val
TAC
[ENA]
¡û
>W1710792850
LJOQ01000094
Cyanobacteriota
Anabaena sp. AL09 39864 [LJOQ]
15986
15914
-
Val
TAC
[ENA]
¡û
>W1710792882
LJOS01000036
Cyanobacteriota
Anabaena sp. WA113 [LJOS]
19784
19856
+
Val
TAC
[ENA]
¡û
>W1710792915
LJOU01000051
Cyanobacteriota
Anabaena sp. AL93 WA93 [LJOU]
28983
28911
-
Val
TAC
[ENA]
¡û
>W1710792968
LJOV01000309
Cyanobacteriota
Anabaena sp. MDT14b [LJOV]
608
680
+
Val
TAC
[ENA]
¡û
>W1710793000
LJOW01000023
Cyanobacteriota
Aphanizomenon flos-aquae WA102 [LJOW]
18461
18389
-
Val
TAC
[ENA]
¡û
>W1710793072
LJOX01000037
Cyanobacteriota
Aphanizomenon flos-aquae MDT14a [LJOX]
12895
12823
-
Val
TAC
[ENA]
¡û
>W1710793111
LJOY01000025
Cyanobacteriota
Aphanizomenon flos-aquae MDT13 [LJOY]
29008
28936
-
Val
TAC
[ENA]
¡û
>W1710882876
LMVE01000011
Cyanobacteriota
Cylindrospermopsis sp. CR12 [LMVE]
63905
63977
+
Val
TAC
[ENA]
¡û
>W131089998
AOFE01000070
Cyanobacteriota
Nodularia spumigena CCY9414 [AOFE]
230561
230633
+
Val
TAC
[ENA]
¡û
>W1711081215
LSSA01000026
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
60513
60585
+
Val
TAC
[ENA]
¡û
>W1711092436
LTEC01000009
Cyanobacteriota
Aphanizomenon flos-aquae UKL13-PB [LTEC]
63966
63894
-
Val
TAC
[ENA]
¡û
>W1711116525
LUBZ01000007
Cyanobacteriota
Cylindrospermopsis raciborskii ITEP-A1 [LUBZ]
100681
100753
+
Val
TAC
[ENA]
¡û
>W1711261795
LYXA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [LYXA]
277334
277262
-
Val
TAC
[ENA]
¡û
>W1711283600
LZQD01000001
Cyanobacteriota
Trichormus sp. NMC-1 [LZQD]
443020
442948
-
Val
TAC
[ENA]
¡û
>W1711335575
MBQX01000005
Cyanobacteriota
Cylindrospermopsis raciborskii CS-508 [MBQX]
8778
8706
-
Val
TAC
[ENA]
¡û
>W1711335652
MBQY01000099
Cyanobacteriota
Cylindrospermopsis raciborskii MVCC14 [MBQY]
36647
36575
-
Val
TAC
[ENA]
¡û
>W1711335802
MBRD01000036
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
139976
140048
+
Val
TAC
[ENA]
¡û
>W1711711329
MTAV01000047
Cyanobacteriota
Nostoc sp. T09 [MTAV]
94366
94442
+
Val
TAC
[ENA]
¡û
>W1711711404
MTAW01000221
Cyanobacteriota
Nostoc sp. 106C [MTAW]
132055
132131
+
Val
TAC
[ENA]
¡û
>W1711711468
MTAX01000138
Cyanobacteriota
Nostoc sp. RF31YmG RF31Y [MTAX]
179700
179776
+
Val
TAC
[ENA]
¡û
>W131058342
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
3752714
3752642
-
Val
TAC
[ENA]
¡û
>W131110092
APIY01000080
Cyanobacteriota
Dolichospermum circinale AWQC131C [APIY]
3104
3032
-
Val
TAC
[ENA]
¡û
>W131110155
APIZ01000273
Cyanobacteriota
Dolichospermum circinale AWQC310F [APIZ]
533
461
-
Val
TAC
[ENA]
¡û
>C001228
CP000117
Cyanobacteriota
Trichormus variabilis ATCC 29413 [CP000117]
3620894
3620822
-
Val
TAC
[Ensembl]
¡û
>C015309
BA000019
Cyanobacteriota
Nostoc sp. PCC 7120 = FACHB-418 [BA000019]
605272
605200
-
Val
TAC
[Ensembl]
¡û
>W141022902
AJWF01000009
Cyanobacteriota
Anabaena sp. PCC 7108 [AJWF]
336086
336158
+
Val
TAC
[ENA]
¡û
>w002280
AAAY02000028
Cyanobacteriota
Nostoc punctiforme [AAAY]
78573
78498
-
Val
TAC
[ENA]
¡û
>W141038736
ALWD01000044
Cyanobacteriota
[Scytonema hofmanni] UTEX B 1581 UTEX 2349 [ALWD]
18591
18517
-
Val
TAC
[ENA]
¡û
>WENV181841072
OGVQ01000104
[OGVQ] freshwater metagenome; freshwater
3315
3243
-
Val
TAC
[ENA]
¢þ
>WENV181852802
OGWH01003828
[OGWH] freshwater metagenome; freshwater
212
140
-
Val
TAC
[ENA]
¢þ
>W141221414
AZYY01000104
Cyanobacteriota
Aphanizomenon flos-aquae NIES-81 [AZYY]
27349
27421
+
Val
TAC
[ENA]
¡û
>C08006901
CP001037
Cyanobacteriota
Nostoc punctiforme PCC 73102 ATCC 29133; PCC 73102 [CP001037]
3373435
3373507
+
Val
TAC
[Ensembl]
¡û
>W09101139
AAEA01000001
Cyanobacteriota
Trichormus variabilis ATCC 29413 [AAEA]
835668
835596
-
Val
TAC
[ENA]
¡û
>W09125747
ACIR01000015
Cyanobacteriota
Trichormus azollae 708 [ACIR]
44015
43943
-
Val
TAC
[ENA]
¡û
>WENV171003105
NNBT01001031
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
485
413
-
Val
TAC
[ENA]
¢þ
>WENV171003482
NNBU01000088
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
24010
24082
+
Val
TAC
[ENA]
¢þ
>WENV171003756
NNBV01000634
[NNBV] plant metagenome; symbiotic tissue sample KVS11
7618
7690
+
Val
TAC
[ENA]
¢þ
>C181004975
AP018280
Cyanobacteriota
Calothrix sp. NIES-4101 [AP018280]
2939370
2939442
+
Val
TAC
-
¡û
>C181043627
CP020114
Cyanobacteriota
Nodularia spumigena UHCC 0039 [CP020114]
5140809
5140881
+
Val
TAC
-
¡û
>C181078450
CP023278
Cyanobacteriota
Nostoc sp. CENA543 [CP023278]
731489
731417
-
Val
TAC
-
¡û
>C181105264
CP024785
Cyanobacteriota
Nostoc flagelliforme CCNUN1 [CP024785]
2770892
2770820
-
Val
TAC
-
¡û
>C181137764
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
1142637
1142564
-
Val
TAC
-
¡û
>C181137858
CP026692
Cyanobacteriota
Nostoc sp. 'Lobaria pulmonaria [5183] cyanobiont' [CP026692]
205363
205291
-
Val
TAC
-
¡û
>C191001296
AP018318
Cyanobacteriota
Nostoc sp. HK-01 NIES-2109 [AP018318]
289035
288963
-
Val
TAC
-
¡û
>C191083013
CP031941
Cyanobacteriota
Nostoc sphaeroides Kutzing En [CP031941]
502684
502756
+
Val
TAC
-
¡û
>W1910008375
BDGE01000017
Cyanobacteriota
Nostoc cycadae WK-1 [BDGE]
28087
28015
-
Val
TAC
[ENA]
¡û
>W1910020495
BDUD01000001
Cyanobacteriota
Nostoc commune NIES-4072 [BDUD]
3523789
3523861
+
Val
TAC
[ENA]
¡û
>W1910175518
BJCE01000206
Cyanobacteriota
Sphaerospermopsis reniformis NIES-1949 [BJCE]
3113
3040
-
Val
TAC
[ENA]
¡û
>W1910175546
BJCF01000013
Cyanobacteriota
Dolichospermum planctonicum NIES-80 [BJCF]
12794
12866
+
Val
TAC
[ENA]
¡û
>W1910596218
LAGX01000050
Cyanobacteriota
Nostoc linckia z1 [LAGX]
81613
81541
-
Val
TAC
[ENA]
¡û
>W1910596332
LAGY01000100
Cyanobacteriota
Nostoc linckia z2 [LAGY]
14676
14604
-
Val
TAC
[ENA]
¡û
>W1910596374
LAGZ01000034
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
64629
64701
+
Val
TAC
[ENA]
¡û
>W1910596449
LAHA01000012
Cyanobacteriota
Nostoc linckia z4 [LAHA]
81617
81545
-
Val
TAC
[ENA]
¡û
>W1910596575
LAHB01000103
Cyanobacteriota
Nostoc linckia z6 [LAHB]
14254
14182
-
Val
TAC
[ENA]
¡û
>W1910596584
LAHC01000024
Cyanobacteriota
Nostoc linckia z7 [LAHC]
14203
14131
-
Val
TAC
[ENA]
¡û
>W1910596731
LAHD01000107
Cyanobacteriota
Nostoc linckia z8 [LAHD]
13862
13934
+
Val
TAC
[ENA]
¡û
>W1910596820
LAHE01000146
Cyanobacteriota
Nostoc linckia z9 [LAHE]
5373
5445
+
Val
TAC
[ENA]
¡û
>W1910596892
LAHF01000094
Cyanobacteriota
Nostoc linckia z13 [LAHF]
14459
14387
-
Val
TAC
[ENA]
¡û
>W1910596986
LAHG01000108
Cyanobacteriota
Nostoc linckia z14 [LAHG]
14215
14143
-
Val
TAC
[ENA]
¡û
>W1910597148
LAHI01000065
Cyanobacteriota
Nostoc linckia z16 [LAHI]
88967
88895
-
Val
TAC
[ENA]
¡û
>W1910597251
LAHJ01000144
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
14169
14097
-
Val
TAC
[ENA]
¡û
>W1910646644
LWSY01000057
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
111380
111452
+
Val
TAC
[ENA]
¡û
>W1910792643
MRBZ01000013
Cyanobacteriota
Nostoc calcicola FACHB-389 [MRBZ]
66342
66270
-
Val
TAC
[ENA]
¡û
>W1910805266
MTPU01000024
Cyanobacteriota
Cylindrospermopsis raciborskii CENA302 [MTPU]
36532
36460
-
Val
TAC
[ENA]
¡û
>W1910859257
NBYN01000003
Cyanobacteriota
Cylindrospermopsis raciborskii CENA303 [NBYN]
66648
66576
-
Val
TAC
[ENA]
¡û
>W1910943168
NJHS01000009
Cyanobacteriota
Cylindrospermopsis raciborskii C07 [NJHS]
81108
81036
-
Val
TAC
[ENA]
¡û
>W1910943195
NJHT01000003
Cyanobacteriota
Cylindrospermopsis raciborskii C04 [NJHT]
23810
23882
+
Val
TAC
[ENA]
¡û
>W1910943254
NJHU01000029
Cyanobacteriota
Cylindrospermopsis raciborskii C03 [NJHU]
81102
81030
-
Val
TAC
[ENA]
¡û
>W1910943280
NJHV01000038
Cyanobacteriota
Cylindrospermopsis raciborskii S14 [NJHV]
23657
23729
+
Val
TAC
[ENA]
¡û
>W1910943330
NJHW01000039
Cyanobacteriota
Cylindrospermopsis raciborskii S10 [NJHW]
49348
49276
-
Val
TAC
[ENA]
¡û
>W1910943381
NJHX01000190
Cyanobacteriota
Cylindrospermopsis raciborskii S07 [NJHX]
50630
50558
-
Val
TAC
[ENA]
¡û
>W1910943431
NJHY01000273
Cyanobacteriota
Cylindrospermopsis raciborskii S06 [NJHY]
24025
24097
+
Val
TAC
[ENA]
¡û
>W1910943476
NJHZ01000378
Cyanobacteriota
Cylindrospermopsis raciborskii S05 [NJHZ]
23952
24024
+
Val
TAC
[ENA]
¡û
>W1910943498
NJIA01000080
Cyanobacteriota
Cylindrospermopsis raciborskii S01 [NJIA]
173533
173605
+
Val
TAC
[ENA]
¡û
>W1911118659
NOLI01000049
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 213 [NOLI]
26322
26395
+
Val
TAC
[ENA]
¡û
>W1911118735
NOLJ01000002
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 210A [NOLJ]
925951
926023
+
Val
TAC
[ENA]
¡û
>W1911118808
NOLK01000025
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
42481
42553
+
Val
TAC
[ENA]
¡û
>W1911153676
NPIK01000002
Cyanobacteriota
Cylindrospermopsis raciborskii CYLP [NPIK]
156353
156281
-
Val
TAC
[ENA]
¡û
>W1911153680
NPIL01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CYRF [NPIL]
638819
638891
+
Val
TAC
[ENA]
¡û
>W1911244280
NSHF01000272
Cyanobacteriota
Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 [NSHF]
4402
4330
-
Val
TAC
[ENA]
¡û
>W1911581786
PGEM01000100
Cyanobacteriota
Cuspidothrix issatschenkoi CHARLIE-1 [PGEM]
5120
5048
-
Val
TAC
[ENA]
¡û
>W1810355691
PVMC01000089
Cyanobacteriota
Cylindrospermopsis raciborskii Cr2010 [PVMC]
92003
91931
-
Val
TAC
[ENA]
¡û
>C151004168
CP003284
Cyanobacteriota
Anabaena sp. 90 [CP003284, CP003285]
3285949
3286021
+
Val
TAC
[Ensembl]
¡û
>C151082950
CP011456
Cyanobacteriota
Anabaena sp. WA102 [CP011456]
1815091
1815163
+
Val
TAC
-
¡û
>W10106017
ACYA01000008
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [ACYA]
47762
47690
-
Val
TAC
[ENA]
¡û
>W10106079
ACYB01000038
Cyanobacteriota
Raphidiopsis brookii D9 [ACYB]
55800
55872
+
Val
TAC
[ENA]
¡û
>W11108340
ACYA01000008
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [ACYA]
47762
47690
-
Val
TAC
[ENA]
¡û
>W11108402
ACYB01000038
Cyanobacteriota
Raphidiopsis brookii D9 [ACYB]
55800
55872
+
Val
TAC
[ENA]
¡û
>C11115552
CP002059
Cyanobacteriota
Nostoc azollae' 0708 [CP002059]
5150862
5150790
-
Val
TAC
[Ensembl]
¡û
>W1511364908
JSDP01000205
Cyanobacteriota
Aphanizomenon flos-aquae 2012/KM1/D3 [JSDP]
78930
78858
-
Val
TAC
[ENA]
¡û
>W1511397011
JTCM01000018
Cyanobacteriota
Hassalia byssoidea VB512170 [JTCM]
393420
393492
+
Val
TAC
[ENA]
¡û
>C161005340
CP007203
Cyanobacteriota
Nodularia spumigena CCY9414 [CP007203]
4309073
4309145
+
Val
TAC
[Ensembl]
¡û
>C161038910
CP012036
Cyanobacteriota
Nostoc piscinale CENA21 [CP012036]
6742545
6742617
+
Val
TAC
[Ensembl]
¡û
>W1610003521
AGCR01000005
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
533001
532926
-
Val
TAC
[ENA]
¡û
>C131004149
CP003548
Cyanobacteriota
Nostoc sp. PCC 7107 [CP003548]
5090351
5090423
+
Val
TAC
[Ensembl]
¡û
>C131004922
CP003642
Cyanobacteriota
Cylindrospermum stagnale PCC 7417 [CP003642]
6473639
6473567
-
Val
TAC
[Ensembl]
¡û
>C131005076
CP003659
Cyanobacteriota
Anabaena cylindrica PCC 7122 [CP003659]
4979083
4979011
-
Val
TAC
[Ensembl]
¡û
>C131010287
CP003943
Cyanobacteriota
Calothrix sp. PCC 7507 [CP003943]
496899
496971
+
Val
TAC
[Ensembl]
¡û
>W1610656730
LJOP01000088
Cyanobacteriota
Anabaena sp. LE011-02 39865 [LJOP]
12575
12647
+
Val
TAC
[ENA]
¡û
>W1610656775
LJOQ01000094
Cyanobacteriota
Anabaena sp. AL09 39864 [LJOQ]
15986
15914
-
Val
TAC
[ENA]
¡û
>W1610656789
LJOR01000021
Cyanobacteriota
Anabaena sp. 39858 [LJOR]
4812
4740
-
Val
TAC
[ENA]
¡û
>W1610656846
LJOS01000036
Cyanobacteriota
Anabaena sp. WA113 [LJOS]
19784
19856
+
Val
TAC
[ENA]
¡û
>W1610656867
LJOT01000017
Cyanobacteriota
Anabaena sp. CRKS33 [LJOT]
30773
30701
-
Val
TAC
[ENA]
¡û
>W1610656919
LJOU01000051
Cyanobacteriota
Anabaena sp. AL93 WA93 [LJOU]
28983
28911
-
Val
TAC
[ENA]
¡û
>W1610656972
LJOV01000309
Cyanobacteriota
Anabaena sp. MDT14b [LJOV]
608
680
+
Val
TAC
[ENA]
¡û
>W1610657004
LJOW01000023
Cyanobacteriota
Aphanizomenon flos-aquae WA102 [LJOW]
18461
18389
-
Val
TAC
[ENA]
¡û
>W1610657076
LJOX01000037
Cyanobacteriota
Aphanizomenon flos-aquae MDT14a [LJOX]
12895
12823
-
Val
TAC
[ENA]
¡û
>W1610657115
LJOY01000025
Cyanobacteriota
Aphanizomenon flos-aquae MDT13 [LJOY]
29008
28936
-
Val
TAC
[ENA]
¡û
>W1610744802
LMVE01000011
Cyanobacteriota
Cylindrospermopsis sp. CR12 [LMVE]
63905
63977
+
Val
TAC
[ENA]
¡û
>W1610926474
LTEC01000009
Cyanobacteriota
Aphanizomenon flos-aquae UKL13-PB [LTEC]
63966
63894
-
Val
TAC
[ENA]
¡û
>W1610927767
LUBZ01000007
Cyanobacteriota
Cylindrospermopsis raciborskii ITEP-A1 [LUBZ]
100681
100753
+
Val
TAC
[ENA]
¡û
>W1610979394
LWAJ01000132
Cyanobacteriota
Nodularia spumigena CENA596 [LWAJ]
19818
19746
-
Val
TAC
[ENA]
¡û
>W1611023770
LYXA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [LYXA]
277334
277262
-
Val
TAC
[ENA]
¡û
>W1611066509
MBRD01000036
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
139976
140048
+
Val
TAC
[ENA]
¡û
>W1710004141
AGCR01000005
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
533001
532926
-
Val
TAC
[ENA]
¡û
>W1710087983
BDUB01000001
Cyanobacteriota
Nodularia sp. NIES-3585 [BDUB]
5379429
5379502
+
Val
TAC
[ENA]
¡û
>W1710088045
BDUC01000004
Cyanobacteriota
Tolypothrix sp. NIES-4075 [BDUC]
631577
631649
+
Val
TAC
[ENA]
¡û
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Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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