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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.236184 (20 seq.)
>W1711705107
MSQD01000007
Bacillota
Thermoanaerobacterium sp. PSU-2 [MSQD]
138
63
-
Thr
GGT
[ENA]
¡û
>W141193961
AYSN01000028
Bacillota
Thermoanaerobacterium aotearoense SCUT27 [AYSN]
216
141
-
Thr
GGT
[ENA]
¡û
>W141238356
BBKT01000045
Bacillota
Thermoanaerobacterium saccharolyticum [BBKT]
51112
51187
+
Thr
GGT
[ENA]
¡û
>WENV170560873
CZCA01000852
[CZCA] anaerobic digester metagenome; anaerobic digester
1989
2064
+
Thr
GGT
[ENA]
¢þ
>WENV170562344
CZCB01002262
[CZCB] anaerobic digester metagenome; anaerobic digester
23486
23411
-
Thr
GGT
[ENA]
¢þ
>WENV170685495
LFRM01095467
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
14853
14928
+
Thr
GGT
[ENA]
¢þ
>WENV170718090
LSQX01061080
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
15459
15384
-
Thr
GGT
[ENA]
¢þ
>WENV170969470
MTKW01029644
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
971
1046
+
Thr
GGT
[ENA]
¢þ
>W09135001
ACVG01000012
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [ACVG]
131
56
-
Thr
GGT
[ENA]
¡û
>W1910747735
MINB01000030
Bacillota
Thermoanaerobacterium thermosaccharolyticum GSU5 [MINB]
666
591
-
Thr
GGT
[ENA]
¡û
>W10120490
ADXD01000025
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
645
570
-
Thr
GGT
[ENA]
¡û
>C10113819
CP002171
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [CP002171]
412128
412203
+
Thr
GGT
[Ensembl]
¡û
>C11113923
CP002360
Bacillota
Mahella australiensis 50-1 BON [CP002360]
2304830
2304755
-
Thr
GGT
[Ensembl]
¡û
>C11123285
CP002739
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [CP002739]
335954
336029
+
Thr
GGT
[Ensembl]
¡û
>W11127099
ADXD01000025
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
645
570
-
Thr
GGT
[ENA]
¡û
>W11150442
AEVQ01000006
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [AEVQ]
133917
133992
+
Thr
GGT
[ENA]
¡û
>C121007614
CP003184
Bacillota
Thermoanaerobacterium saccharolyticum JW/SL-YS485 [CP003184]
1042678
1042753
+
Thr
GGT
[Ensembl]
¡û
>C131001906
CP003066
Bacillota
Thermoanaerobacterium thermosaccharolyticum M0795 [CP003066]
365629
365704
+
Thr
GGT
[Ensembl]
¡û
>W1610606055
LFSN01000039
Bacillota
Clostridia bacterium DTU030 [LFSN]
14853
14928
+
Thr
GGT
[ENA]
¡û
>W1710727342
LFSN01000039
Bacillota
Clostridia bacterium DTU030 [LFSN]
14853
14928
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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