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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.236221 (57 seq.)
>W1710776309
LIZN01000001
Actinomycetota
Thermobifida halotolerans [LIZN]
675880
675955
+
Asn
GTT
[ENA]
¡û
>W131166326
ARCJ01000035
Actinomycetota
Embleya scabrispora DSM 41855 [ARCJ]
12253
12178
-
Asn
GTT
[ENA]
¡û
>W1711317106
MAXA01000102
Actinomycetota
Parafrankia soli NRRL B-16219 [MAXA]
2484
2411
-
Asn
GTT
[ENA]
¡û
>W1711492086
MKKC01000087
Actinomycetota
Nocardiopsis sp. CNR-923 [MKKC]
69289
69214
-
Asn
GTT
[ENA]
¡û
>W1711603488
MOMC01000018
Actinomycetota
Pseudofrankia asymbiotica NRRL B-16386 [MOMC]
322
397
+
Asn
GTT
[ENA]
¡û
>W1711613598
MOYN01000049
Actinomycetota
Thermomonospora sp. CIF 1 [MOYN]
16849
16924
+
Asn
GTT
[ENA]
¡û
>C171070720
CP017965
Actinomycetota
Nocardiopsis dassonvillei NOCA502F [CP017965]
1761598
1761671
+
Asn
GTT
-
¡û
>C171070721
CP017965
Actinomycetota
Nocardiopsis dassonvillei NOCA502F [CP017965]
1761837
1761910
+
Asn
GTT
-
¡û
>W131054595
ANAW01000133
Actinomycetota
Nocardiopsis synnemataformans DSM 44143 [ANAW]
25055
25128
+
Asn
GTT
[ENA]
¡û
>W131054596
ANAW01000133
Actinomycetota
Nocardiopsis synnemataformans DSM 44143 [ANAW]
25305
25378
+
Asn
GTT
[ENA]
¡û
>W131098820
AOSG01000022
Actinomycetota
Thermobifida fusca TM51 [AOSG]
47135
47210
+
Asn
GTT
[ENA]
¡û
>W131179394
ARMI01000062
Actinomycetota
Nocardiopsis sp. CNS-639 CNS639 [ARMI]
446942
447015
+
Asn
GTT
[ENA]
¡û
>W131179395
ARMI01000062
Actinomycetota
Nocardiopsis sp. CNS-639 CNS639 [ARMI]
447181
447254
+
Asn
GTT
[ENA]
¡û
>W131179874
ARMS01000041
Actinomycetota
Actinomadura atramentaria DSM 43919 [ARMS]
610035
609960
-
Asn
GTT
[ENA]
¡û
>C025590
CP000088
Actinomycetota
Thermobifida fusca YX [CP000088]
1027508
1027583
+
Asn
GTT
[Ensembl]
¡û
>w001884
AAAQ02000002
Actinomycetota
Thermobifida fusca [AAAQ]
372593
372668
+
Asn
GTT
[ENA]
¡û
>W141275756
JADG01000004
Actinomycetota
Actinomadura oligospora ATCC 43269 [JADG]
670143
670068
-
Asn
GTT
[ENA]
¡û
>WENV183662624
ORJL010211818
[ORJL] groundwater metagenome; groundwater
68
142
+
Asn
GTT
[ENA]
¢þ
>WENV183674213
ORJL011361813
[ORJL] groundwater metagenome; groundwater
649
722
+
Asn
GTT
[ENA]
¢þ
>WENV170961855
MLJW01002662
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
106
181
+
Asn
GTT
[ENA]
¢þ
>C181064848
CP022434
Actinomycetota
Nocardiopsis dassonvillei HZNU_N_1 [CP022434]
1756657
1756730
+
Asn
GTT
-
¡û
>C181064849
CP022434
Actinomycetota
Nocardiopsis dassonvillei HZNU_N_1 [CP022434]
1756896
1756969
+
Asn
GTT
-
¡û
>C181198648
CP031264
Actinomycetota
Peterkaempfera bronchialis DSM 106435 [CP031264]
1908423
1908350
-
Asn
GTT
-
¡û
>C181198649
CP031264
Actinomycetota
Peterkaempfera bronchialis DSM 106435 [CP031264]
1908302
1908229
-
Asn
GTT
-
¡û
>C191089040
CP032402
Actinomycetota
Thermomonospora amylolytica YIM 77502 [CP032402]
4188035
4188110
+
Asn
GTT
-
¡û
>W09110241
ABUZ01000009
Actinomycetota
Thermomonospora curvata DSM 43183 [ABUZ]
148118
148193
+
Asn
GTT
[ENA]
¡û
>W141766863
JOEG01000016
Actinomycetota
Actinocatenispora sera [JOEG]
85143
85070
-
Asn
GTT
[ENA]
¡û
>W141767528
JOER01000021
Actinomycetota
Kitasatospora aureofaciens [JOER]
39384
39311
-
Asn
GTT
[ENA]
¡û
>W1910568606
JEMR01000020
Actinomycetota
Thermobifida fusca GAFM-TF-ZOO [JEMR]
9949
9876
-
Asn
GTT
[ENA]
¡û
>W1910575960
JRUV01000214
Actinomycetota
Thermobifida halotolerans DSM 44931 [JRUV]
39446
39521
+
Asn
GTT
[ENA]
¡û
>W1910803671
MTBP01000002
Actinomycetota
Actinomadura rubteroloni 5·î2Æü [MTBP]
626173
626100
-
Asn
GTT
[ENA]
¡û
>W1911539615
ONLN01000376
Actinomycetota
Thermobifida fusca [ONLN]
1984
1911
-
Asn
GTT
[ENA]
¡û
>W1810296249
PTJD01000008
Actinomycetota
Kineococcus xinjiangensis DSM 22857 [PTJD]
4074
4001
-
Asn
GTT
[ENA]
¡û
>W1810367944
PVZC01000001
Actinomycetota
Allonocardiopsis opalescens DSM 45601 [PVZC]
1602971
1603045
+
Asn
GTT
[ENA]
¡û
>W1810368704
PVZV01000002
Actinomycetota
Actinocorallia populi A251 [PVZV]
907813
907739
-
Asn
GTT
[ENA]
¡û
>W1810570448
QEIM01000011
Actinomycetota
Marinitenerispora sediminis TPS83 [QEIM]
9503
9576
+
Asn
GTT
[ENA]
¡û
>W1810570534
QEIN01000137
Actinomycetota
Marinitenerispora sediminis TPS81 [QEIN]
4534
4461
-
Asn
GTT
[ENA]
¡û
>W1810570560
QEIO01000013
Actinomycetota
Marinitenerispora sediminis TPS16 [QEIO]
21720
21793
+
Asn
GTT
[ENA]
¡û
>W1810698107
QLYX01000015
Actinomycetota
Actinomadura craniellae LHW63021 [QLYX]
201747
201674
-
Asn
GTT
[ENA]
¡û
>W1810888912
QURH01001030
Actinomycetota
Actinomadura logoneensis NEAU-G17 [QURH]
14300
14225
-
Asn
GTT
[ENA]
¡û
>C10113150
CP001738
Actinomycetota
Thermomonospora curvata DSM 43183 [CP001738]
3685567
3685492
-
Asn
GTT
[Ensembl]
¡û
>W1610051340
BBGT01000348
Actinomycetota
Thermobifida fusca NBRC 14071 = JCM 3263 [BBGT]
1247
1322
+
Asn
GTT
[ENA]
¡û
>W1610067588
BCQR01000080
Actinomycetota
Actinomadura kijaniata NBRC 14229 [BCQR]
20382
20457
+
Asn
GTT
[ENA]
¡û
>W1610067649
BCQS01000005
Actinomycetota
Actinomadura latina NBRC 106108 [BCQS]
503245
503172
-
Asn
GTT
[ENA]
¡û
>W1610068524
BCRK01000019
Actinomycetota
Nocardiopsis trehalosi NBRC 14201 [BCRK]
20602
20529
-
Asn
GTT
[ENA]
¡û
>W1610073704
BCWB01000017
Actinomycetota
Thermobifida fusca NBRC 14071 = JCM 3263 [BCWB]
81389
81314
-
Asn
GTT
[ENA]
¡û
>W1610612194
LGEM01000138
Actinomycetota
Thermobifida cellulosilytica TB100 [LGEM]
52793
52868
+
Asn
GTT
[ENA]
¡û
>W1610640415
LIZN01000001
Actinomycetota
Thermobifida halotolerans [LIZN]
675880
675955
+
Asn
GTT
[ENA]
¡û
>W1710047739
BBGT01000348
Actinomycetota
Thermobifida fusca NBRC 14071 = JCM 3263 [BBGT]
1247
1322
+
Asn
GTT
[ENA]
¡û
>W1710064961
BCQR01000080
Actinomycetota
Actinomadura kijaniata NBRC 14229 [BCQR]
20382
20457
+
Asn
GTT
[ENA]
¡û
>W1710065022
BCQS01000005
Actinomycetota
Actinomadura latina NBRC 106108 [BCQS]
503245
503172
-
Asn
GTT
[ENA]
¡û
>W1710065897
BCRK01000019
Actinomycetota
Nocardiopsis trehalosi NBRC 14201 [BCRK]
20602
20529
-
Asn
GTT
[ENA]
¡û
>W1710070822
BCWB01000017
Actinomycetota
Thermobifida fusca NBRC 14071 = JCM 3263 [BCWB]
81389
81314
-
Asn
GTT
[ENA]
¡û
>W1710588480
FQZK01000002
Actinomycetota
Nocardiopsis flavescens [FQZK]
372480
372553
+
Asn
GTT
[ENA]
¡û
>W1710588481
FQZK01000002
Actinomycetota
Nocardiopsis flavescens [FQZK]
372611
372686
+
Asn
GTT
[ENA]
¡û
>W1710600691
FUWS01000002
Actinomycetota
Marinactinospora thermotolerans DSM 45154 [FUWS]
225126
225201
+
Asn
GTT
[ENA]
¡û
>W1710733700
LGEM01000138
Actinomycetota
Thermobifida cellulosilytica TB100 [LGEM]
52793
52868
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK