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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23635 (80 seq.)
>W1710786954
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
4012066
4011979
-
Ser
CGA
[ENA]
¡û
>W1710860289
LMCT01000023
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
101187
101276
+
Ser
CGA
[ENA]
¡û
>W1710866981
LMHX01000034
Actinomycetota
Kitasatospora sp. Root187 [LMHX]
197944
197855
-
Ser
CGA
[ENA]
¡û
>W1710881140
LMSW01000001
Actinomycetota
Terrabacter sp. Soil810 [LMSW]
272090
272179
+
Ser
CGA
[ENA]
¡û
>W1710889849
LNBE01000004
Actinomycetota
Streptomyces roseifaciens MBT76 [LNBE]
1676623
1676712
+
Ser
CGA
[ENA]
¡û
>W1711079624
LSOE01000021
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis [LSOE]
198695
198606
-
Ser
CGA
[ENA]
¡û
>W1711183448
LWLA01000049
Actinomycetota
Streptomyces sp. CB03911 [LWLA]
22390
22479
+
Ser
CGA
[ENA]
¡û
>W1711326547
MBFJ01000012
Actinomycetota
Jiangella alba [MBFJ]
262644
262555
-
Ser
CGA
[ENA]
¡û
>W1711360788
MDJY01000033
Actinomycetota
Clavibacter michiganensis [MDJY]
15447
15358
-
Ser
CGA
[ENA]
¡û
>W1711589926
MOEP01000138
Actinomycetota
Streptomyces cinnamoneus [MOEP]
87194
87105
-
Ser
CGA
[ENA]
¡û
>W1711743847
MUFU01000024
Actinomycetota
Streptomyces alboverticillatus [MUFU]
13855
13768
-
Ser
CGA
[ENA]
¡û
>C171122506
CP021744
Actinomycetota
Streptomyces albireticuli MDJK11 [CP021744]
3697217
3697304
+
Ser
CGA
-
¡û
>WENV180023345
FTHV01000853
[FTHV] metagenome; soil
3604
3515
-
Ser
CGA
[ENA]
¢þ
>WENV180023397
FTHV01014477
[FTHV] metagenome; soil
2
91
+
Ser
CGA
[ENA]
¢þ
>WENV180023475
FTHY01000823
[FTHY] metagenome; soil
3604
3515
-
Ser
CGA
[ENA]
¢þ
>WENV180023526
FTHY01010874
[FTHY] metagenome; soil
2
91
+
Ser
CGA
[ENA]
¢þ
>WENV180024805
FTIJ01039196
[FTIJ] metagenome; soil
1739
1828
+
Ser
CGA
[ENA]
¢þ
>WENV180033212
FTKF01054283
[FTKF] metagenome; soil
2
91
+
Ser
CGA
[ENA]
¢þ
>WENV180033686
FTKL01008099
[FTKL] metagenome; soil
2526
2615
+
Ser
CGA
[ENA]
¢þ
>WENV180033879
FTKL01582703
[FTKL] metagenome; soil
52
141
+
Ser
CGA
[ENA]
¢þ
>WENV180035050
FTKT01000481
[FTKT] metagenome; soil
19197
19286
+
Ser
CGA
[ENA]
¢þ
>W141220351
AZXT01000001
Actinomycetota
Jiangella gansuensis DSM 44835 [AZXT]
220557
220644
+
Ser
CGA
[ENA]
¡û
>W141282681
JAIY01000004
Actinomycetota
Kitasatospora sp. MBT66 [JAIY]
428496
428585
+
Ser
CGA
[ENA]
¡û
>W141282750
JAIZ01000052
Actinomycetota
Kitasatospora sp. MBT63 [JAIZ]
61582
61669
+
Ser
CGA
[ENA]
¡û
>WENV170565614
FJVZ01001089
[FJVZ] metagenome; soil
2435
2524
+
Ser
CGA
[ENA]
¢þ
>C181116289
CP025394
Actinomycetota
Kitasatospora sp. MMS16-BH015 [CP025394]
4181539
4181628
+
Ser
CGA
-
¡û
>C181200661
CP031455
Actinomycetota
Streptomyces olivoreticuli subsp. olivoreticuli ATCC 31159 [CP031455]
5278940
5278851
-
Ser
CGA
-
¡û
>C191127818
CP034587
Actinomycetota
Streptomyces luteoverticillatus CGMCC 15060 [CP034587]
3821145
3821058
-
Ser
CGA
-
¡û
>W141756170
JNWZ01000086
Actinomycetota
Kitasatospora phosalacinea [JNWZ]
49360
49449
+
Ser
CGA
[ENA]
¡û
>W141757003
JNXO01000393
Actinomycetota
Kitasatospora misakiensis [JNXO]
4718
4629
-
Ser
CGA
[ENA]
¡û
>W141757804
JNYE01000002
Actinomycetota
Kitasatospora phosalacinea [JNYE]
33102
33191
+
Ser
CGA
[ENA]
¡û
>W141761039
JOAL01000336
Actinomycetota
Actinoalloteichus caeruleus cyanogriseus [JOAL]
4517
4428
-
Ser
CGA
[ENA]
¡û
>W141761918
JOBB01000397
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JOBB]
4090
4179
+
Ser
CGA
[ENA]
¡û
>W141764988
JODB01001915
Actinomycetota
Streptomyces sp. NRRL S-426 [JODB]
2110
2199
+
Ser
CGA
[ENA]
¡û
>W141765997
JODS01000003
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JODS]
424675
424586
-
Ser
CGA
[ENA]
¡û
>W141766926
JOEH01000009
Actinomycetota
Streptacidiphilus jeojiense [JOEH]
198371
198284
-
Ser
CGA
[ENA]
¡û
>W141767507
JOER01000011
Actinomycetota
Kitasatospora aureofaciens [JOER]
71071
71158
+
Ser
CGA
[ENA]
¡û
>W141768838
JOFL01000022
Actinomycetota
Streptomyces roseoverticillatus [JOFL]
73208
73119
-
Ser
CGA
[ENA]
¡û
>W141770034
JOGF01000477
Actinomycetota
Streptomyces sp. NRRL S-984 [JOGF]
5380
5291
-
Ser
CGA
[ENA]
¡û
>W141771115
JOGY01000282
Actinomycetota
Streptomyces sp. NRRL S-1777 [JOGY]
370
459
+
Ser
CGA
[ENA]
¡û
>W141818499
JQLN01000005
Actinomycetota
Kitasatospora mediocidica KCTC 9733 [JQLN]
1711218
1711129
-
Ser
CGA
[ENA]
¡û
>W141819635
JQMJ01000003
Actinomycetota
Streptacidiphilus rugosus AM-16 [JQMJ]
677958
677871
-
Ser
CGA
[ENA]
¡û
>W141819799
JQML01000001
Actinomycetota
Streptacidiphilus albus JL83 [JQML]
5126952
5126865
-
Ser
CGA
[ENA]
¡û
>W141819998
JQMO01000003
Actinomycetota
Kitasatospora azatica KCTC 9699 [JQMO]
3021950
3021861
-
Ser
CGA
[ENA]
¡û
>W1910613641
LGUI01000003
Actinomycetota
Streptomyces eurocidicus ATCC 27428 [LGUI]
453045
452958
-
Ser
CGA
[ENA]
¡û
>W1910839833
MZMQ01000001
Actinomycetota
Clavibacter michiganensis subsp. tessellarius ATCC 33566 [MZMQ]
1397564
1397653
+
Ser
CGA
[ENA]
¡û
>W1911245220
NSJV01000370
Actinomycetota
Streptomyces albireticuli NRRL B-1670 [NSJV]
32857
32770
-
Ser
CGA
[ENA]
¡û
>W1911738064
QUAL01000172
Actinomycetota
Jiangella rhizosphaerae NEAU-YY265 [QUAL]
11706
11617
-
Ser
CGA
[ENA]
¡û
>W1810223822
POTW01000023
Actinomycetota
Jiangella anatolica GTF31 [POTW]
10095
10184
+
Ser
CGA
[ENA]
¡û
>W1810387815
PXWG01000114
Actinomycetota
Streptosporangium nondiastaticum TBG75A20 [PXWG]
531
442
-
Ser
CGA
[ENA]
¡û
>W1810394699
PYBW01000039
Actinomycetota
Streptomyces tateyamensis ATCC 21389 [PYBW]
104540
104451
-
Ser
CGA
[ENA]
¡û
>W1810577922
QEOP01000001
Actinomycetota
Amnibacterium flavum M8JJ-5 [QEOP]
284463
284374
-
Ser
CGA
[ENA]
¡û
>W1810898887
QVAI01000005
Actinomycetota
Jiangella endophytica KE2-3 [QVAI]
157043
156954
-
Ser
CGA
[ENA]
¡û
>C151039200
CP008889
Actinomycetota
Dermacoccus nishinomiyaensis M25 [CP008889]
2794871
2794960
+
Ser
CGA
[Ensembl]
¡û
>W1510013952
BBPL01000008
Actinomycetota
Streptacidiphilus albus NBRC 100918 [BBPL]
193269
193356
+
Ser
CGA
[ENA]
¡û
>W1510014035
BBPM01000043
Actinomycetota
Streptacidiphilus carbonis NBRC 100919 [BBPM]
24361
24274
-
Ser
CGA
[ENA]
¡û
>W1510014108
BBPN01000032
Actinomycetota
Streptacidiphilus jiangxiensis NBRC 100920 [BBPN]
106133
106046
-
Ser
CGA
[ENA]
¡û
>W1510014158
BBPO01000033
Actinomycetota
Streptacidiphilus neutrinimicus NBRC 100921 [BBPO]
35376
35289
-
Ser
CGA
[ENA]
¡û
>C11111575
CP002810
Actinomycetota
Isoptericola variabilis 225 [CP002810]
3022981
3022892
-
Ser
CGA
[Ensembl]
¡û
>W1511352427
JROD01000002
Actinomycetota
Clavibacter michiganensis CF11 [JROD]
289751
289840
+
Ser
CGA
[ENA]
¡û
>W1511529075
JYJF01000054
Actinomycetota
Saccharothrix sp. ST-888 [JYJF]
26795
26706
-
Ser
CGA
[ENA]
¡û
>W1511545252
JZKH01000038
Actinomycetota
Streptomyces rubellomurinus ATCC 31215 [JZKH]
48034
48121
+
Ser
CGA
[ENA]
¡û
>W1511555624
JZWY01000090
Actinomycetota
Streptomyces sp. NRRL S-495 [JZWY]
47476
47563
+
Ser
CGA
[ENA]
¡û
>W1511555673
JZWZ01000068
Actinomycetota
Streptomyces sp. NRRL B-1568 [JZWZ]
2099
2012
-
Ser
CGA
[ENA]
¡û
>W1511594789
LBMC01000053
Actinomycetota
Jiangella alkaliphila KCTC 19222 [LBMC]
66821
66910
+
Ser
CGA
[ENA]
¡û
>W1511629623
LDCM01000004
Actinomycetota
Dermacoccus sp. PE3 [LDCM]
418913
419002
+
Ser
CGA
[ENA]
¡û
>W1511687889
LFVW01000064
Actinomycetota
Kitasatospora sp. MY 5-36 [LFVW]
18910
18823
-
Ser
CGA
[ENA]
¡û
>W1511690001
LFXL01000013
Actinomycetota
Jiangella muralis DSM 45357 [LFXL]
85400
85489
+
Ser
CGA
[ENA]
¡û
>W1511696784
LGDO01000093
Actinomycetota
Streptomyces sp. XY431 [LGDO]
14132
14043
-
Ser
CGA
[ENA]
¡û
>W1610021800
ATNL01000008
Actinomycetota
Cellulosimicrobium cellulans F16 [ATNL]
656442
656531
+
Ser
CGA
[ENA]
¡û
>W1610650809
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
4012066
4011979
-
Ser
CGA
[ENA]
¡û
>W1610722635
LMCT01000023
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
101187
101276
+
Ser
CGA
[ENA]
¡û
>W1610729327
LMHX01000034
Actinomycetota
Kitasatospora sp. Root187 [LMHX]
197944
197855
-
Ser
CGA
[ENA]
¡û
>W1610743486
LMSW01000001
Actinomycetota
Terrabacter sp. Soil810 [LMSW]
272090
272179
+
Ser
CGA
[ENA]
¡û
>W1610750227
LNBE01000004
Actinomycetota
Streptomyces roseifaciens MBT76 [LNBE]
1676623
1676712
+
Ser
CGA
[ENA]
¡û
>W1610918534
LSOE01000021
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis [LSOE]
198695
198606
-
Ser
CGA
[ENA]
¡û
>W1710018495
ATNL01000008
Actinomycetota
Cellulosimicrobium cellulans F16 [ATNL]
656442
656531
+
Ser
CGA
[ENA]
¡û
>W1710537904
FNUC01000004
Actinomycetota
Jiangella alba [FNUC]
888149
888060
-
Ser
CGA
[ENA]
¡û
>W1710544665
FOAZ01000003
Actinomycetota
Streptacidiphilus jiangxiensis [FOAZ]
59332
59419
+
Ser
CGA
[ENA]
¡û
>W1710604671
FVZG01000002
Actinomycetota
Clavibacter michiganensis [FVZG]
267717
267806
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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