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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.236538 (56 seq.)
>WENV181191394
OEPS010075501
[OEPS] soil metagenome; soil
540
467
-
Ile
GAT
[ENA]
¡û
>WENV181376395
OFQZ01040519
[OFQZ] wastewater metagenome; Exp Tend NO 0WW
278
202
-
Ile
GAT
[ENA]
¡û
>WENV181416847
OGCL01164754
[OGCL] hot springs metagenome; Hot spring water
290
366
+
Ile
GAT
[ENA]
¡û
>WENV170003066
AGTN01216180
[AGTN] bioreactor metagenome; poplar biomass
334
258
-
Ile
GAT
[ENA]
¡û
>WENV170020524
BBPE01010430
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
575
499
-
Ile
GAT
[ENA]
¡û
>WENV170576885
FRDC01002003
[FRDC] freshwater metagenome; water
638
711
+
Ile
GAT
[ENA]
¡û
>WENV170734870
LULK01026705
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
120
196
+
Ile
GAT
[ENA]
¡û
>W1810692357
QLIX01000083
Alphaproteobacteria
Roseicella frigidaeris DB-1506 [QLIX]
626
699
+
Ile
GAT
[ENA]
¡û
>W2010433316
JAAABL010000081
Alphaproteobacteria
Rhodovarius lipocyclicus CCUG 44693 [JAAABL]
2028
2104
+
Ile
GAT
[ENA]
¡û
>W2010473701
JAAIKB010000038
Alphaproteobacteria
Roseomonas sp. PeD5 [JAAIKB]
3799
3723
-
Ile
GAT
[ENA]
¡û
>W2010575270
JAAVTX010000017
Alphaproteobacteria
Roseomonas frigidaquae JCM 15073 [JAAVTX]
3519
3446
-
Ile
GAT
[ENA]
¡û
>W2010575441
JAAVUP010000032
Alphaproteobacteria
Roseomonas oryzicola KCTC 22478 [JAAVUP]
2173
2249
+
Ile
GAT
[ENA]
¡û
>W2010724531
JACIDJ010000014
Alphaproteobacteria
Roseococcus suduntuyensis DSM 19979 [JACIDJ]
3577
3504
-
Ile
GAT
[ENA]
¡û
>W2011326164
QXGS01000127
Alphaproteobacteria
Roseomonas sp. CPCC 101021 [QXGS]
133
58
-
Ile
GAT
[ENA]
¡û
>W2011616398
SKBM01000073
Alphaproteobacteria
Paracraurococcus sp. NE82 [SKBM]
383
456
+
Ile
GAT
[ENA]
¡û
>W2011639939
SMSJ01000292
Alphaproteobacteria
Dankookia rubra JCM30602 [SMSJ]
415
488
+
Ile
GAT
[ENA]
¡û
>W2011647043
SNVJ01000049
Alphaproteobacteria
Roseomonas sp. M0104 [SNVJ]
3497
3422
-
Ile
GAT
[ENA]
¡û
>W2011839032
UGVO01000001
Alphaproteobacteria
Roseomonas gilardii subsp. rosea NCTC13290 [UGVO]
465211
465286
+
Ile
GAT
[ENA]
¡û
>W2011839049
UGVO01000001
Alphaproteobacteria
Roseomonas gilardii subsp. rosea NCTC13290 [UGVO]
1666885
1666960
+
Ile
GAT
[ENA]
¡û
>W2011839066
UGVO01000001
Alphaproteobacteria
Roseomonas gilardii subsp. rosea NCTC13290 [UGVO]
2120162
2120087
-
Ile
GAT
[ENA]
¡û
>W2011839083
UGVO01000002
Alphaproteobacteria
Roseomonas gilardii subsp. rosea NCTC13290 [UGVO]
169521
169446
-
Ile
GAT
[ENA]
¡û
>W2011839087
UGVO01000004
Alphaproteobacteria
Roseomonas gilardii subsp. rosea NCTC13290 [UGVO]
277091
277166
+
Ile
GAT
[ENA]
¡û
>W2011839089
UGVO01000005
Alphaproteobacteria
Roseomonas gilardii subsp. rosea NCTC13290 [UGVO]
305
380
+
Ile
GAT
[ENA]
¡û
>W2110029421
BMKS01000032
Alphaproteobacteria
Caldovatus sediminis CGMCC 1.16330 [BMKS]
2014
2087
+
Ile
GAT
[ENA]
¡û
>W2110137956
JAAEDH010000048
Alphaproteobacteria
Roseomonas arctica LMG 28251 [JAAEDH]
2057
2130
+
Ile
GAT
[ENA]
¡û
>W2110138003
JAAEDI010000053
Alphaproteobacteria
Roseomonas terrae LMG 31159 [JAAEDI]
2183
2259
+
Ile
GAT
[ENA]
¡û
>W2110265953
JACTUZ010000379
Alphaproteobacteria
Roseomonas ludipueritiae DSM 14915 [JACTUZ]
326
401
+
Ile
GAT
[ENA]
¡û
>W2110265994
JACTVA010000102
Alphaproteobacteria
Roseomonas aerophila NBRC 108923 [JACTVA]
3677
3602
-
Ile
GAT
[ENA]
¡û
>W2110445317
JAERQM010000017
Alphaproteobacteria
Roseomonas sp. ROY-5-3 [JAERQM]
3943
3870
-
Ile
GAT
[ENA]
¡û
>W2110445365
JAERQN010000029
Alphaproteobacteria
Roseomonas ponticola SYSU M41301 [JAERQN]
3749
3676
-
Ile
GAT
[ENA]
¡û
>W2110494773
JAFFQX010000009
Alphaproteobacteria
Roseococcus suduntuyensis SHET [JAFFQX]
2011
2084
+
Ile
GAT
[ENA]
¡û
>W2110591842
JAHCDA010000009
Alphaproteobacteria
Roseococcus sp. XZZS9 [JAHCDA]
3703
3628
-
Ile
GAT
[ENA]
¡û
>W2110667923
JAHZUY010000105
Alphaproteobacteria
Caldovatus sp. SYSU G05006 [JAHZUY]
1994
2067
+
Ile
GAT
[ENA]
¡û
>C231018017
AP025637
Alphaproteobacteria
Roseomonas sp. S08 [AP025637]
1172183
1172259
+
Ile
GAT
-
¡û
>C231018021
AP025637
Alphaproteobacteria
Roseomonas sp. S08 [AP025637]
1885110
1885186
+
Ile
GAT
-
¡û
>C231032808
CP025061
Alphaproteobacteria
Roseomonas mucosa PG [CP025061]
660981
661056
+
Ile
GAT
-
¡û
>C231032812
CP025061
Alphaproteobacteria
Roseomonas mucosa PG [CP025061]
1409371
1409446
+
Ile
GAT
-
¡û
>C231032819
CP025061
Alphaproteobacteria
Roseomonas mucosa PG [CP025061]
2452511
2452586
+
Ile
GAT
-
¡û
>C231032848
CP025061
Alphaproteobacteria
Roseomonas mucosa PG [CP025061]
2871483
2871408
-
Ile
GAT
-
¡û
>C231032863
CP025061
Alphaproteobacteria
Roseomonas mucosa PG [CP025061]
222781
222706
-
Ile
GAT
-
¡û
>C231245108
CP087719
Alphaproteobacteria
Roseomonas sp. OT10 [CP087719]
1258015
1258088
+
Ile
GAT
-
¡û
>C231245126
CP087719
Alphaproteobacteria
Roseomonas sp. OT10 [CP087719]
4944827
4944900
+
Ile
GAT
-
¡û
>C231245131
CP087719
Alphaproteobacteria
Roseomonas sp. OT10 [CP087719]
5277064
5277137
+
Ile
GAT
-
¡û
>C231361844
CP095554
Alphaproteobacteria
Roseomonas gilardii subsp. gilardii ATCC 49956 [CP095554]
1661404
1661479
+
Ile
GAT
-
¡û
>C231361850
CP095554
Alphaproteobacteria
Roseomonas gilardii subsp. gilardii ATCC 49956 [CP095554]
2688289
2688364
+
Ile
GAT
-
¡û
>C231361873
CP095554
Alphaproteobacteria
Roseomonas gilardii subsp. gilardii ATCC 49956 [CP095554]
3089399
3089324
-
Ile
GAT
-
¡û
>C231361891
CP095554
Alphaproteobacteria
Roseomonas gilardii subsp. gilardii ATCC 49956 [CP095554]
615624
615549
-
Ile
GAT
-
¡û
>C231361894
CP095554
Alphaproteobacteria
Roseomonas gilardii subsp. gilardii ATCC 49956 [CP095554]
372792
372717
-
Ile
GAT
-
¡û
>W2110762783
RCVQ01000027
Alphaproteobacteria
Roseomonas sp. KE0001 [RCVQ]
2049
2124
+
Ile
GAT
[ENA]
¡û
>W10119159
ADVL01000363
Alphaproteobacteria
Pseudoroseomonas cervicalis ATCC 49957 [ADVL]
3517
3442
-
Ile
GAT
[ENA]
¡û
>W2130010177
JAAGBC010000136
Alphaproteobacteria
Roseomonas hellenica LMG 31524 [JAAGBC]
3753
3680
-
Ile
GAT
[ENA]
¡û
>W1511352873
JROR01000004
Alphaproteobacteria
Belnapia sp. F-4-1 [JROR]
145034
144961
-
Ile
GAT
[ENA]
¡û
>W1511352903
JROR01000015
Alphaproteobacteria
Belnapia sp. F-4-1 [JROR]
13247
13174
-
Ile
GAT
[ENA]
¡û
>W1511352910
JROR01000045
Alphaproteobacteria
Belnapia sp. F-4-1 [JROR]
412
339
-
Ile
GAT
[ENA]
¡û
>W11125379
ADVL01000363
Alphaproteobacteria
Pseudoroseomonas cervicalis ATCC 49957 [ADVL]
3517
3442
-
Ile
GAT
[ENA]
¡û
>W1710567329
FOSQ01000037
Alphaproteobacteria
Falsiroseomonas stagni DSM 19981 [FOSQ]
3789
3716
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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