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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.236741 (5 seq.)
>W131180842
ARNL01000039
Alphaproteobacteria
Yoonia vestfoldensis DSM 16212 [ARNL]
31154
31230
+
His
GTG
[ENA]
¡û
>C171118960
CP021431
Alphaproteobacteria
Yoonia vestfoldensis SMR4r [CP021431]
2072244
2072168
-
His
GTG
-
¡û
>WENV180395734
OBPT01102597
[OBPT] marine metagenome; ENVO:00002010 seawater
225
301
+
His
GTG
[ENA]
¡û
>WENV181414033
OGCK01201852
[OGCK] hot springs metagenome; hot spring sediment
394
318
-
His
GTG
[ENA]
¡û
>SRA1052946
SRR035098.305664
454 Sequencing (SRP001819)
88
12
-
His
GTG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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