This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.236800 (20 seq.)
>W131003066
AHAB01000009
Spirochaetota
Treponema denticola SP23 [AHAB]
227154
227227
+
Ala
TGC
[ENA]
¡û
>W141005570
AGDW01000001
Spirochaetota
Treponema denticola H1-T [AGDW]
225229
225156
-
Ala
TGC
[ENA]
¡û
>W141005723
AGDZ01000027
Spirochaetota
Treponema denticola SP33 [AGDZ]
229820
229893
+
Ala
TGC
[ENA]
¡û
>WENV180241158
OBDF01051322
[OBDF] human oral metagenome; human oral
63
136
+
Ala
TGC
[ENA]
¡û
>WENV180548446
OCIW01038649
[OCIW] human oral metagenome; human oral
117
190
+
Ala
TGC
[ENA]
¡û
>WENV180925298
ODTK01079785
[ODTK] human metagenome; G_DNA_Supragingival plaque
301
228
-
Ala
TGC
[ENA]
¡û
>WENV181067340
ODZI01013748
[ODZI] human metagenome; G_DNA_Supragingival plaque
2231
2158
-
Ala
TGC
[ENA]
¡û
>WENV181311780
OFJB01011969
[OFJB] sludge metagenome; sludge
183
258
+
Ala
TGC
[ENA]
¡û
>WENV170670821
LAHU01001920
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
490
564
+
Ala
TGC
[ENA]
¡û
>C211083858
CP050497
Spirochaetota
Treponema sp. OMZ 806 [CP050497]
217354
217281
-
Ala
TGC
-
¡û
>C231045380
CP038803
Spirochaetota
Treponema putidum OMZ 846 [CP038803]
2266029
2265956
-
Ala
TGC
-
¡û
>C231062246
CP051200
Spirochaetota
Treponema sp. OMZ 789 [CP051200]
1597369
1597296
-
Ala
TGC
-
¡û
>C231062533
CP051302
Spirochaetota
Treponema denticola OMZ 853 [CP051302]
2164636
2164563
-
Ala
TGC
-
¡û
>C231062617
CP051304
Spirochaetota
Treponema denticola CD-1 [CP051304]
2266017
2265944
-
Ala
TGC
-
¡û
>C231062620
CP051304
Spirochaetota
Treponema denticola CD-1 [CP051304]
1660113
1660040
-
Ala
TGC
-
¡û
>C231062654
CP051305
Spirochaetota
Treponema sp. OMZ 798 [CP051305]
2326837
2326764
-
Ala
TGC
-
¡û
>C231062663
CP051305
Spirochaetota
Treponema sp. OMZ 798 [CP051305]
1589878
1589805
-
Ala
TGC
-
¡û
>C231062683
CP051522
Spirochaetota
Treponema denticola OMZ 910 [CP051522]
512426
512499
+
Ala
TGC
-
¡û
>C231070463
CP054477
Spirochaetota
Treponema denticola OMZ 823 [CP054477]
2252327
2252254
-
Ala
TGC
-
¡û
>C231078244
CP058347
Spirochaetota
Treponema denticola OKA3 [CP058347]
1664607
1664534
-
Ala
TGC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK