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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.236833 (12 seq.)
>WENV180288352
OBIL01134987
[OBIL] metagenome; hydrothermal vent
146
72
-
Arg
TCT
[ENA]
¡û
>WENV181318897
OFKB01004813
[OFKB] marine metagenome; seawater
492
416
-
Arg
TCT
[ENA]
¡û
>WENV183708570
PDWI01017487
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
5247
5323
+
Arg
TCT
[ENA]
¡û
>WENV183713415
PDWI01137603
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
623
699
+
Arg
TCT
[ENA]
¡û
>C191012342
CP016379
Bacillota
Anoxybacter fermentans DY22613 [CP016379]
1442632
1442556
-
Arg
TCT
-
¡û
>SRA1049075
SRR035095.14680
454 Sequencing (SRP001816)
166
90
-
Arg
TCT
[SRA]
>W2110119426
CAJPFF010000188
Thermodesulfobacteriota
Geobacteraceae bacterium [CAJPFF]
4663
4587
-
Arg
TCT
[ENA]
¡û
>W2110593950
JAHCZI010000002
Thermodesulfobacteriota
Geobacter hydrogenophilus DSM 13691 [JAHCZI]
301495
301419
-
Arg
TCT
[ENA]
¡û
>C231027589
AP027151
Thermodesulfobacteriota
Geotalea uraniireducens NIT-SL11 [AP027151]
2494070
2493994
-
Arg
TCT
-
¡û
>C231128555
CP072789
Thermodesulfobacteriota
Geobacter sulfurreducens PL [CP072789]
2028373
2028297
-
Arg
TCT
-
¡û
>W2310021340
BSDS01000002
Thermodesulfobacteriota
Geobacter hydrogenophilus H2 [BSDS]
212763
212839
+
Arg
TCT
[ENA]
¡û
>C161025448
CP010430
Thermodesulfobacteriota
Geobacter sulfurreducens AM-1 [CP010430]
3741158
3741234
+
Arg
TCT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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