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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.236864 (54 seq.)
>W1710866205
LMHH01000001
Alphaproteobacteria
Altererythrobacter sp. Root672 [LMHH]
836940
837016
+
Arg
CCT
[ENA]
¡û
>W1710913041
LNSD01000001
Alphaproteobacteria
Sphingopyxis sp. H057 [LNSD]
290312
290236
-
Arg
CCT
[ENA]
¡û
>W1710913175
LNSG01000001
Alphaproteobacteria
Sphingopyxis sp. H073 [LNSG]
287174
287250
+
Arg
CCT
[ENA]
¡û
>W1710913229
LNSH01000003
Alphaproteobacteria
Sphingopyxis sp. H081 [LNSH]
290312
290236
-
Arg
CCT
[ENA]
¡û
>W1711073462
LSIO01000105
Alphaproteobacteria
Blastomonas sp. CCH5-A3 [LSIO]
133315
133391
+
Arg
CCT
[ENA]
¡û
>W1711261663
LYWY01000019
Alphaproteobacteria
Croceicoccus pelagius [LYWY]
88041
87965
-
Arg
CCT
[ENA]
¡û
>W131058872
ANFZ01000009
Alphaproteobacteria
Blastomonas sp. AAP53 [ANFZ]
609866
609790
-
Arg
CCT
[ENA]
¡û
>WENV181227091
OFDN01001723
[OFDN] hot springs metagenome; Water
1220
1296
+
Arg
CCT
[ENA]
¡û
>WENV181308309
OFIS01003222
[OFIS] sludge metagenome; sludge
120
196
+
Arg
CCT
[ENA]
¡û
>WENV181321468
OFKM01002138
[OFKM] marine metagenome; sea ice
959
883
-
Arg
CCT
[ENA]
¡û
>WENV183631362
OOGU01089933
[OOGU] marine metagenome; sea ice
295
219
-
Arg
CCT
[ENA]
¡û
>WENV183729526
PJTQ01060070
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
139
215
+
Arg
CCT
[ENA]
¡û
>WENV183750215
PPFU01273070
[PPFU] hypolithon metagenome; Antarctic Hypolithon
80
4
-
Arg
CCT
[ENA]
¡û
>WENV170002491
AGTN01049094
[AGTN] bioreactor metagenome; poplar biomass
91
167
+
Arg
CCT
[ENA]
¡û
>WENV170004021
AGTN01537567
[AGTN] bioreactor metagenome; poplar biomass
108
184
+
Arg
CCT
[ENA]
¡û
>WENV170004515
AGTN01706398
[AGTN] bioreactor metagenome; poplar biomass
110
186
+
Arg
CCT
[ENA]
¡û
>WENV170176317
CEOS01062552
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
6242
6166
-
Arg
CCT
[ENA]
¡û
>WENV170278451
CERQ01095658
[CERQ] marine metagenome genome assembly TARA_065_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
6244
6168
-
Arg
CCT
[ENA]
¡û
>W141484919
JFYZ01000001
Alphaproteobacteria
Novosphingobium resinovorum [JFYZ]
693513
693589
+
Arg
CCT
[ENA]
¡û
>C191155775
CP037948
Alphaproteobacteria
Qipengyuania sediminis CGMCC 1.12928 [CP037948]
927348
927272
-
Arg
CCT
-
¡û
>W09102940
AAIP01000001
Alphaproteobacteria
Sphingopyxis alaskensis RB2256 [AAIP]
95482
95406
-
Arg
CCT
[ENA]
¡û
>W1910549120
FZPA01000009
Alphaproteobacteria
Sphingopyxis indica DS15 [FZPA]
83476
83552
+
Arg
CCT
[ENA]
¡û
>W1910727959
MGVU01000364
Alphaproteobacteria
Erythrobacter sp. RIFCSPHIGHO2_12_FULL_63_10 [MGVU]
2943
2867
-
Arg
CCT
[ENA]
¡û
>W1810658698
QJJM01000020
Alphaproteobacteria
Blastomonas natatoria DSM 3183 [QJJM]
28109
28185
+
Arg
CCT
[ENA]
¡û
>W1810683163
QKVT01000001
Alphaproteobacteria
Blastomonas sp. UPD001 [QKVT]
1026950
1026874
-
Arg
CCT
[ENA]
¡û
>C151051489
CP009452
Alphaproteobacteria
Sphingopyxis sp. 113P3 [CP009452]
779993
780069
+
Arg
CCT
-
¡û
>W2010430881
FZPA01000009
Alphaproteobacteria
Sphingopyxis indica DS15 [FZPA]
83476
83552
+
Arg
CCT
[ENA]
¡û
>W2010679881
JACDUG010000001
Alphaproteobacteria
Sphingobium sp. B10D3C [JACDUG]
1642287
1642363
+
Arg
CCT
[ENA]
¡û
>W2010706138
JACHJZ010000001
Alphaproteobacteria
Sphingobium sp. B12D2A [JACHJZ]
1016283
1016207
-
Arg
CCT
[ENA]
¡û
>W2010982458
NIWD01000008
Alphaproteobacteria
Sphingopyxis sp. GW247-27LB [NIWD]
978577
978653
+
Arg
CCT
[ENA]
¡û
>W2011344319
QYUM01000002
Alphaproteobacteria
Sphingomonas sp. K2R01-6 [QYUM]
126089
126013
-
Arg
CCT
[ENA]
¡û
>W2011498781
RXOL01000001
Alphaproteobacteria
Croceicoccus sp. GM-16 [RXOL]
495974
495898
-
Arg
CCT
[ENA]
¡û
>W2012426117
WRPO01000001
Alphaproteobacteria
Novosphingobium sp. M24A2M [WRPO]
148067
147991
-
Arg
CCT
[ENA]
¡û
>W2110049967
BMZA01000011
Alphaproteobacteria
Novosphingobium colocasiae KCTC 32255 [BMZA]
88052
88128
+
Arg
CCT
[ENA]
¡û
>W2110610681
JAHKKS010000007
Alphaproteobacteria
Sphingobium xanthum NL9 [JAHKKS]
106403
106479
+
Arg
CCT
[ENA]
¡û
>C211128186
CP060052
Alphaproteobacteria
Croceicoccus marinus OT19 [CP060052]
2312675
2312599
-
Arg
CCT
-
¡û
>C211181022
CP063839
Alphaproteobacteria
Sphingopyxis granuli RW412 [CP063839]
1291778
1291854
+
Arg
CCT
-
¡û
>C241181193
CP076394
Alphaproteobacteria
Sphingopyxis indica MC4 [CP076394]
2650288
2650212
-
Arg
CCT
-
¡û
>C241282371
CP128492
Alphaproteobacteria
Novosphingobium resinovorum HR1a [CP128491, CP128492]
1434307
1434383
+
Arg
CCT
-
¡û
>W1511352521
JROG01000003
Alphaproteobacteria
Sphingomonas sp. 35-24ZXX 35-24ZXX 35-24zxx [JROG]
561054
560978
-
Arg
CCT
[ENA]
¡û
>C161099951
CP016591
Alphaproteobacteria
Tsuneonella dongtanensis KCTC 22672 [CP016591]
2210923
2210847
-
Arg
CCT
[Ensembl]
¡û
>W1610071215
BCTX01000001
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
105499
105575
+
Arg
CCT
[ENA]
¡û
>W1610720554
LMAU01000002
Alphaproteobacteria
Tsuneonella troitsensis [LMAU]
129444
129520
+
Arg
CCT
[ENA]
¡û
>W1610728551
LMHH01000001
Alphaproteobacteria
Altererythrobacter sp. Root672 [LMHH]
836940
837016
+
Arg
CCT
[ENA]
¡û
>W1610771400
LNSD01000001
Alphaproteobacteria
Sphingopyxis sp. H057 [LNSD]
290312
290236
-
Arg
CCT
[ENA]
¡û
>W1610771445
LNSE01000001
Alphaproteobacteria
Sphingopyxis sp. H067 [LNSE]
421465
421541
+
Arg
CCT
[ENA]
¡û
>W1610771534
LNSG01000001
Alphaproteobacteria
Sphingopyxis sp. H073 [LNSG]
287174
287250
+
Arg
CCT
[ENA]
¡û
>W1610771588
LNSH01000003
Alphaproteobacteria
Sphingopyxis sp. H081 [LNSH]
290312
290236
-
Arg
CCT
[ENA]
¡û
>W1610771637
LNSI01000003
Alphaproteobacteria
Sphingopyxis sp. H100 [LNSI]
257570
257646
+
Arg
CCT
[ENA]
¡û
>W1610771749
LNSK01000005
Alphaproteobacteria
Sphingopyxis sp. A083 [LNSK]
6289
6213
-
Arg
CCT
[ENA]
¡û
>W1610912767
LSIO01000105
Alphaproteobacteria
Blastomonas sp. CCH5-A3 [LSIO]
133315
133391
+
Arg
CCT
[ENA]
¡û
>W1611023638
LYWY01000019
Alphaproteobacteria
Croceicoccus pelagius [LYWY]
88041
87965
-
Arg
CCT
[ENA]
¡û
>W1710068580
BCTX01000001
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
105499
105575
+
Arg
CCT
[ENA]
¡û
>W1710602897
FUYP01000018
Alphaproteobacteria
Sphingopyxis flava [FUYP]
4061
3985
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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