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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237009 (7 seq.)
>WENV181723556
OGPW01009046
[OGPW] human gut metagenome; faeces
509
583
+
Arg
TCT
[ENA]
¡û
>WENV182114474
OHIY01045023
[OHIY] human gut metagenome; feces
320
395
+
Arg
TCT
[ENA]
¡û
>WENV182171544
OHMX01003025
[OHMX] human gut metagenome; feces
3945
3870
-
Arg
TCT
[ENA]
¡û
>WENV182998246
OLBS01021737
[OLBS] human gut metagenome; human gut
203
278
+
Arg
TCT
[ENA]
¡û
>WENV183002322
OLCN01024320
[OLCN] human gut metagenome; human gut
249
324
+
Arg
TCT
[ENA]
¡û
>WENV183148711
OLOO01000255
[OLOO] human gut metagenome; faeces
42063
42137
+
Arg
TCT
[ENA]
¡û
>WENV183568395
OOCB01003201
[OOCB] human gut metagenome; human gut
8574
8500
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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