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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237155 (96 seq.)
>W1711129184
LUTU01000005
Alphaproteobacteria
Gluconobacter cerinus [LUTU]
199063
198988
-
Glu
TTC
[ENA]
¡û
>W1711143193
LVHE01000006
Alphaproteobacteria
Gluconobacter japonicus [LVHE]
440507
440582
+
Glu
TTC
[ENA]
¡û
>C171032977
CP014687
Alphaproteobacteria
Acetobacter persici TMW2.1084 [CP014687]
1252948
1253023
+
Glu
CTC
-
¡û
>C171033007
CP014687
Alphaproteobacteria
Acetobacter persici TMW2.1084 [CP014687]
2274766
2274691
-
Glu
TTC
-
¡û
>C171033077
CP014689
Alphaproteobacteria
Gluconobacter albidus TMW2.1191 [CP014689]
417801
417726
-
Glu
TTC
-
¡û
>C171033111
CP014691
Alphaproteobacteria
Neoasaia chiangmaiensis NBRC 101099 [CP014691]
2089191
2089116
-
Glu
TTC
-
¡û
>W131176030
ARJS01000040
Alphaproteobacteria
Saccharibacter floricola DSM 15669 [ARJS]
2274
2199
-
Glu
TTC
[ENA]
¡û
>W131241417
BARL01000005
Alphaproteobacteria
Gluconobacter frateurii NBRC 103465 [BARL]
206139
206064
-
Glu
TTC
[ENA]
¡û
>W131240819
BAON01000040
Alphaproteobacteria
Gluconobacter thailandicus NBRC 3255 [BAON]
7338
7413
+
Glu
TTC
[ENA]
¡û
>W141224571
BAIN01000038
Alphaproteobacteria
Acetobacter papayae JCM 25143 [BAIN]
18365
18290
-
Glu
TTC
[ENA]
¡û
>W141224593
BAIO01000038
Alphaproteobacteria
Komagataeibacter kakiaceti JCM 25156 [BAIO]
2313
2388
+
Glu
TTC
[ENA]
¡û
>W141224600
BAIO01000072
Alphaproteobacteria
Komagataeibacter kakiaceti JCM 25156 [BAIO]
1295
1370
+
Glu
CTC
[ENA]
¡û
>W141226107
BAJU01000007
Alphaproteobacteria
Acetobacter okinawensis JCM 25146 [BAJU]
38850
38775
-
Glu
TTC
[ENA]
¡û
>W141226118
BAJU01000017
Alphaproteobacteria
Acetobacter okinawensis JCM 25146 [BAJU]
14936
15011
+
Glu
TTC
[ENA]
¡û
>W141229941
BASM01000024
Alphaproteobacteria
Gluconobacter thailandicus NBRC 3257 [BASM]
13767
13692
-
Glu
TTC
[ENA]
¡û
>WENV170166366
CEOO01056110
[CEOO] marine metagenome genome assembly TARA_036_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
90
15
-
Glu
TTC
[ENA]
¢þ
>WENV170194641
CEPJ01050846
[CEPJ] marine metagenome genome assembly TARA_048_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4294
4219
-
Glu
TTC
[ENA]
¢þ
>WENV170330489
CESV01314461
[CESV] marine metagenome genome assembly TARA_100_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
412
487
+
Glu
TTC
[ENA]
¢þ
>W141428618
JEOA01000008
Alphaproteobacteria
Acetobacter aceti 1023 [JEOA]
115143
115218
+
Glu
TTC
[ENA]
¡û
>WENV170767445
LXNH01001623
[LXNH] seawater metagenome; marine seawater
6329
6254
-
Glu
TTC
[ENA]
¢þ
>WENV170769400
LXNH01053401
[LXNH] seawater metagenome; marine seawater
1216
1291
+
Glu
TTC
[ENA]
¢þ
>WENV170820677
MDSY01008731
[MDSY] marine metagenome; seawater
476
551
+
Glu
TTC
[ENA]
¢þ
>WENV170830290
MDSZ01024361
[MDSZ] marine metagenome; seawater
5718
5793
+
Glu
TTC
[ENA]
¢þ
>WENV170940958
MDTG01352176
[MDTG] marine metagenome; seawater
2047
1972
-
Glu
TTC
[ENA]
¢þ
>C181077177
CP023189
Alphaproteobacteria
Acetobacter pomorum SH [CP023189]
595647
595572
-
Glu
TTC
-
¡û
>C181077179
CP023189
Alphaproteobacteria
Acetobacter pomorum SH [CP023189]
482463
482388
-
Glu
TTC
-
¡û
>C191002699
AP018515
Alphaproteobacteria
Acetobacter orientalis FAN1 [AP018515]
2584575
2584500
-
Glu
TTC
-
¡û
>C191002700
AP018515
Alphaproteobacteria
Acetobacter orientalis FAN1 [AP018515]
2214707
2214632
-
Glu
TTC
-
¡û
>C191100525
CP033087
Alphaproteobacteria
Commensalibacter melissae AMU001 [CP033087]
222418
222343
-
Glu
TTC
-
¡û
>C191158410
CP038231
Alphaproteobacteria
Formicincola oecophyllae F3b2 [CP038231]
601579
601654
+
Glu
TTC
-
¡û
>W1910015256
BDLW01000018
Alphaproteobacteria
Komagataeibacter diospyri MSKU15 [BDLW]
91332
91407
+
Glu
TTC
[ENA]
¡û
>W1910015281
BDLW01000033
Alphaproteobacteria
Komagataeibacter diospyri MSKU15 [BDLW]
95367
95442
+
Glu
CTC
[ENA]
¡û
>W1910181378
BJLY01000001
Alphaproteobacteria
Gluconobacter roseus NBRC 3990 [BJLY]
262518
262443
-
Glu
TTC
[ENA]
¡û
>W1910181854
BJMK01000001
Alphaproteobacteria
Gluconobacter sphaericus NBRC 12467 [BJMK]
126
51
-
Glu
TTC
[ENA]
¡û
>W1910872349
NDFO01000011
Alphaproteobacteria
Acetobacter syzygii KR-1 [NDFO]
100167
100242
+
Glu
TTC
[ENA]
¡û
>W1910872373
NDFP01000001
Alphaproteobacteria
Acetobacter syzygii KR-2 [NDFP]
549
474
-
Glu
TTC
[ENA]
¡û
>W1910990673
NKUC01000010
Alphaproteobacteria
Komagataeibacter xylinus LMG 1515 [NKUC]
92887
92962
+
Glu
TTC
[ENA]
¡û
>W1810000594
BEWL01000001
Alphaproteobacteria
Gluconobacter albidus NBRC 3250 [BEWL]
615777
615852
+
Glu
TTC
[ENA]
¡û
>W1810000640
BEWM01000001
Alphaproteobacteria
Gluconobacter cerinus NBRC 3267 [BEWM]
677757
677832
+
Glu
TTC
[ENA]
¡û
>W1810000689
BEWN01000001
Alphaproteobacteria
Gluconobacter frateurii NBRC 3264 [BEWN]
211094
211019
-
Glu
TTC
[ENA]
¡û
>W1810000760
BEWO01000011
Alphaproteobacteria
Gluconobacter japonicus NBRC 3271 [BEWO]
81644
81569
-
Glu
TTC
[ENA]
¡û
>W1810000792
BEWP01000004
Alphaproteobacteria
Gluconobacter kondonii NBRC 3266 [BEWP]
78233
78308
+
Glu
TTC
[ENA]
¡û
>W1810604046
QGLT01000006
Alphaproteobacteria
Commensalibacter melissae ESL0284 [QGLT]
12143
12068
-
Glu
TTC
[ENA]
¡û
>W1511271184
JOKM01000071
Alphaproteobacteria
Acetobacter tropicalis DmCS_006 [JOKM]
99644
99719
+
Glu
TTC
[ENA]
¡û
>W1511271193
JOKM01000085
Alphaproteobacteria
Acetobacter tropicalis DmCS_006 [JOKM]
12366
12441
+
Glu
TTC
[ENA]
¡û
>W1511620419
LCTG01000002
Alphaproteobacteria
Gluconobacter oxydans NL71 [LCTG]
226514
226589
+
Glu
TTC
[ENA]
¡û
>W11186884
CADS01000008
Alphaproteobacteria
Komagataeibacter europaeus 5P3 [CADS]
581
506
-
Glu
TTC
[ENA]
¡û
>W11186892
CADS01000015
Alphaproteobacteria
Komagataeibacter europaeus 5P3 [CADS]
3055
3130
+
Glu
CTC
[ENA]
¡û
>W11186952
CADT01000007
Alphaproteobacteria
Komagataeibacter oboediens 174Bp2 [CADT]
24671
24596
-
Glu
CTC
[ENA]
¡û
>C161096036
CP016328
Alphaproteobacteria
Gluconobacter oxydans 1.637 [CP016328]
1354645
1354570
-
Glu
TTC
-
¡û
>W121034248
AHKI01000001
Alphaproteobacteria
Gluconobacter thailandicus WSH-003 [AHKI]
4515
4440
-
Glu
TTC
[ENA]
¡û
>W121123402
BADZ01000001
Alphaproteobacteria
Gluconobacter frateurii NBRC 101659 [BADZ]
64520
64445
-
Glu
TTC
[ENA]
¡û
>W1610040856
BAMX01000057
Alphaproteobacteria
Acetobacter orientalis 21F-2 [BAMX]
101
26
-
Glu
TTC
[ENA]
¡û
>W1610041158
BANG01000001
Alphaproteobacteria
Gluconobacter frateurii M-2 [BANG]
183
108
-
Glu
TTC
[ENA]
¡û
>W1610041224
BANH01000032
Alphaproteobacteria
Gluconobacter thailandicus F149-1 = NBRC 100600 [BANH]
16926
17001
+
Glu
TTC
[ENA]
¡û
>W1610070887
BCTP01000011
Alphaproteobacteria
Komagataeibacter xylinus NBRC 15237 [BCTP]
92790
92865
+
Glu
TTC
[ENA]
¡û
>W1610076855
BCZB01000016
Alphaproteobacteria
Neokomagataea thailandica NBRC 106555 [BCZB]
22426
22351
-
Glu
TTC
[ENA]
¡û
>C131009937
CP003926
Alphaproteobacteria
Gluconobacter oxydans H24 [CP003926]
524820
524895
+
Glu
TTC
[Ensembl]
¡û
>W1610624267
LHZG01000166
Alphaproteobacteria
Gluconobacter oxydans [LHZG]
1382
1307
-
Glu
TTC
[ENA]
¡û
>W1610624291
LHZH01000061
Alphaproteobacteria
Gluconobacter japonicus [LHZH]
339
264
-
Glu
TTC
[ENA]
¡û
>W1610624353
LHZI01001531
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
3366
3441
+
Glu
TTC
[ENA]
¡û
>W1610624397
LHZJ01000074
Alphaproteobacteria
Gluconobacter japonicus [LHZJ]
33695
33770
+
Glu
TTC
[ENA]
¡û
>W1610624448
LHZK01000120
Alphaproteobacteria
Gluconobacter japonicus [LHZK]
70896
70821
-
Glu
TTC
[ENA]
¡û
>W1610624562
LHZM01000090
Alphaproteobacteria
Gluconobacter thailandicus [LHZM]
235931
235856
-
Glu
TTC
[ENA]
¡û
>W1610624569
LHZN01000091
Alphaproteobacteria
Gluconobacter albidus [LHZN]
5533
5608
+
Glu
TTC
[ENA]
¡û
>W1610624640
LHZO01000063
Alphaproteobacteria
Gluconobacter japonicus [LHZO]
217475
217550
+
Glu
TTC
[ENA]
¡û
>W1610624670
LHZP01000023
Alphaproteobacteria
Gluconobacter roseus [LHZP]
77618
77543
-
Glu
TTC
[ENA]
¡û
>W1610624771
LHZR01000110
Alphaproteobacteria
Gluconobacter albidus [LHZR]
29195
29120
-
Glu
TTC
[ENA]
¡û
>W1610624796
LHZS01000079
Alphaproteobacteria
Gluconobacter thailandicus [LHZS]
13709
13634
-
Glu
TTC
[ENA]
¡û
>W1610624875
LHZT01000130
Alphaproteobacteria
Acetobacter tropicalis [LHZT]
142786
142861
+
Glu
TTC
[ENA]
¡û
>W1610625006
LHZW01000055
Alphaproteobacteria
Gluconobacter oxydans [LHZW]
11484
11409
-
Glu
TTC
[ENA]
¡û
>W1610940257
LUTU01000005
Alphaproteobacteria
Gluconobacter cerinus [LUTU]
199063
198988
-
Glu
TTC
[ENA]
¡û
>W1610954201
LVHE01000006
Alphaproteobacteria
Gluconobacter japonicus [LVHE]
440507
440582
+
Glu
TTC
[ENA]
¡û
>W1710038054
BAMX01000057
Alphaproteobacteria
Acetobacter orientalis 21F-2 [BAMX]
101
26
-
Glu
TTC
[ENA]
¡û
>W1710038356
BANG01000001
Alphaproteobacteria
Gluconobacter frateurii M-2 [BANG]
183
108
-
Glu
TTC
[ENA]
¡û
>W1710038422
BANH01000032
Alphaproteobacteria
Gluconobacter thailandicus F149-1 = NBRC 100600 [BANH]
16926
17001
+
Glu
TTC
[ENA]
¡û
>W1710068209
BCTP01000011
Alphaproteobacteria
Komagataeibacter xylinus NBRC 15237 [BCTP]
92790
92865
+
Glu
TTC
[ENA]
¡û
>W1710074544
BCZB01000016
Alphaproteobacteria
Neokomagataea thailandica NBRC 106555 [BCZB]
22426
22351
-
Glu
TTC
[ENA]
¡û
>W1710624330
JOMO01000005
Alphaproteobacteria
Acetobacter orientalis [JOMO]
77
2
-
Glu
TTC
[ENA]
¡û
>W1710624475
JOOY01000045
Alphaproteobacteria
Acetobacter orientalis [JOOY]
6021
6096
+
Glu
TTC
[ENA]
¡û
>W1710624653
JOPC01000032
Alphaproteobacteria
Acetobacter persici [JOPC]
241
316
+
Glu
TTC
[ENA]
¡û
>W1710624728
JOPF01000009
Alphaproteobacteria
Gluconobacter sp. DsW_056 [JOPF]
493109
493184
+
Glu
TTC
[ENA]
¡û
>W1710624810
JOPH01000033
Alphaproteobacteria
Gluconobacter sp. DsW_058 [JOPH]
86361
86286
-
Glu
TTC
[ENA]
¡û
>W1710755385
LHZG01000166
Alphaproteobacteria
Gluconobacter oxydans [LHZG]
1382
1307
-
Glu
TTC
[ENA]
¡û
>W1710755409
LHZH01000061
Alphaproteobacteria
Gluconobacter japonicus [LHZH]
339
264
-
Glu
TTC
[ENA]
¡û
>W1710755471
LHZI01001531
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
3366
3441
+
Glu
TTC
[ENA]
¡û
>W1710755515
LHZJ01000074
Alphaproteobacteria
Gluconobacter japonicus [LHZJ]
33695
33770
+
Glu
TTC
[ENA]
¡û
>W1710755566
LHZK01000120
Alphaproteobacteria
Gluconobacter japonicus [LHZK]
70896
70821
-
Glu
TTC
[ENA]
¡û
>W1710755680
LHZM01000090
Alphaproteobacteria
Gluconobacter thailandicus [LHZM]
235931
235856
-
Glu
TTC
[ENA]
¡û
>W1710755687
LHZN01000091
Alphaproteobacteria
Gluconobacter albidus [LHZN]
5533
5608
+
Glu
TTC
[ENA]
¡û
>W1710755758
LHZO01000063
Alphaproteobacteria
Gluconobacter japonicus [LHZO]
217475
217550
+
Glu
TTC
[ENA]
¡û
>W1710755788
LHZP01000023
Alphaproteobacteria
Gluconobacter roseus [LHZP]
77618
77543
-
Glu
TTC
[ENA]
¡û
>W1710755889
LHZR01000110
Alphaproteobacteria
Gluconobacter albidus [LHZR]
29195
29120
-
Glu
TTC
[ENA]
¡û
>W1710755914
LHZS01000079
Alphaproteobacteria
Gluconobacter thailandicus [LHZS]
13709
13634
-
Glu
TTC
[ENA]
¡û
>W1710755993
LHZT01000130
Alphaproteobacteria
Acetobacter tropicalis [LHZT]
142786
142861
+
Glu
TTC
[ENA]
¡û
>W1710756124
LHZW01000055
Alphaproteobacteria
Gluconobacter oxydans [LHZW]
11484
11409
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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