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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237158 (76 seq.)
>W1710785493
LJHX01000069
Alphaproteobacteria
alpha proteobacterium AAP81b [LJHX]
7354
7278
-
Arg
ACG
[ENA]
¡û
>W1710856784
LLZQ01000001
Alphaproteobacteria
Novosphingobium sp. FSW06-99 [LLZQ]
292377
292453
+
Arg
ACG
[ENA]
¡û
>W1710856785
LLZQ01000001
Alphaproteobacteria
Novosphingobium sp. FSW06-99 [LLZQ]
292525
292601
+
Arg
ACG
[ENA]
¡û
>W131058869
ANFZ01000009
Alphaproteobacteria
Blastomonas sp. AAP53 [ANFZ]
408594
408670
+
Arg
ACG
[ENA]
¡û
>WENV180020031
FTCV01000835
[FTCV] metagenome; soil
23832
23756
-
Arg
ACG
[ENA]
¡û
>WENV180020032
FTCV01000835
[FTCV] metagenome; soil
23701
23625
-
Arg
ACG
[ENA]
¡û
>W141077983
ATHL01000156
Alphaproteobacteria
Novosphingobium lindaniclasticum LE124 [ATHL]
106
182
+
Arg
ACG
[ENA]
¡û
>W141077984
ATHL01000156
Alphaproteobacteria
Novosphingobium lindaniclasticum LE124 [ATHL]
236
312
+
Arg
ACG
[ENA]
¡û
>WENV181848474
OGVZ01008336
[OGVZ] freshwater metagenome; freshwater
680
756
+
Arg
ACG
[ENA]
¡û
>C08007322
CP000774
Alphaproteobacteria
Parvibaculum lavamentivorans DS-1 [CP000774]
337190
337266
+
Arg
ACG
[Ensembl]
¡û
>WENV183733142
PJTY01000113
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
12883
12959
+
Arg
ACG
[ENA]
¡û
>WENV183733143
PJTY01000113
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
13002
13078
+
Arg
ACG
[ENA]
¡û
>WENV183733144
PJTY01000113
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
13136
13212
+
Arg
ACG
[ENA]
¡û
>WENV170023187
BCQK01150863
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
316
240
-
Arg
ACG
[ENA]
¡û
>WENV170550931
CXWF01051748
[CXWF] marine metagenome genome assembly TARA_064_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4524
4448
-
Arg
ACG
[ENA]
¡û
>WENV170556972
CXWL01016945
[CXWL] groundwater metagenome; biofilm material
33106
33030
-
Arg
ACG
[ENA]
¡û
>W141484915
JFYZ01000001
Alphaproteobacteria
Novosphingobium resinovorum [JFYZ]
446904
446980
+
Arg
ACG
[ENA]
¡û
>W141484916
JFYZ01000001
Alphaproteobacteria
Novosphingobium resinovorum [JFYZ]
447030
447106
+
Arg
ACG
[ENA]
¡û
>W141485005
JFZA02000056
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [JFZA]
69563
69639
+
Arg
ACG
[ENA]
¡û
>C181088920
CP023682
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023682]
1940572
1940648
+
Arg
ACG
-
¡û
>W09133984
ACQU01000013
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [ACQU]
31556
31480
-
Arg
ACG
[ENA]
¡û
>W1910182459
BJMX01000003
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae NBRC 13757 [BJMX]
162659
162583
-
Arg
ACG
[ENA]
¡û
>C141008811
CP006818
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP006818]
1468199
1468123
-
Arg
ACG
[Ensembl]
¡û
>SRA1015800
SRR023846.205004
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
48
124
+
Arg
ACG
[SRA]
>W2010096041
BJMW01000012
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NBRC 13756 [BJMW]
14721
14797
+
Arg
ACG
[ENA]
¡û
>W2010096074
BJMX01000003
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae NBRC 13757 [BJMX]
162659
162583
-
Arg
ACG
[ENA]
¡û
>W2010311536
CABWMU010000023
Alphaproteobacteria
Sphingomonas sp. 8AM [CABWMU]
335833
335757
-
Arg
ACG
[ENA]
¡û
>W2011538401
SCMZ01000009
Alphaproteobacteria
Sphingomonas sp. 2SG [SCMZ]
77334
77258
-
Arg
ACG
[ENA]
¡û
>W2011619502
SLVB01000001
Alphaproteobacteria
Novosphingobium sp. PhB165 [SLVB]
1072211
1072135
-
Arg
ACG
[ENA]
¡û
>W2011619503
SLVB01000001
Alphaproteobacteria
Novosphingobium sp. PhB165 [SLVB]
1072077
1072001
-
Arg
ACG
[ENA]
¡û
>W2011619504
SLVB01000001
Alphaproteobacteria
Novosphingobium sp. PhB165 [SLVB]
1071942
1071866
-
Arg
ACG
[ENA]
¡û
>W2012019975
VFOD01000001
Alphaproteobacteria
Zymomonas mobilis NRRL B-4492 [VFOD]
1048306
1048230
-
Arg
ACG
[ENA]
¡û
>W2012020061
VFOF01000001
Alphaproteobacteria
Zymomonas mobilis AN0101 [VFOF]
25210
25286
+
Arg
ACG
[ENA]
¡û
>W2012020125
VFOG01000001
Alphaproteobacteria
Zymomonas mobilis DSM 14017 [VFOG]
1124509
1124585
+
Arg
ACG
[ENA]
¡û
>W2012020211
VFOI01000001
Alphaproteobacteria
Zymomonas mobilis DSM 12494 [VFOI]
15491
15567
+
Arg
ACG
[ENA]
¡û
>W2012041267
VIRF01000078
Alphaproteobacteria
Novosphingobium sp. BW1 [VIRF]
311959
311883
-
Arg
ACG
[ENA]
¡û
>W2012041268
VIRF01000078
Alphaproteobacteria
Novosphingobium sp. BW1 [VIRF]
311837
311761
-
Arg
ACG
[ENA]
¡û
>W2012041269
VIRF01000078
Alphaproteobacteria
Novosphingobium sp. BW1 [VIRF]
311711
311635
-
Arg
ACG
[ENA]
¡û
>W2012046629
VIVG01000001
Alphaproteobacteria
Zymomonas mobilis NRRL B-4286 [VIVG]
1429154
1429078
-
Arg
ACG
[ENA]
¡û
>W2012308127
WEFI01000003
Alphaproteobacteria
Polymorphobacter fuscus D40P [WEFI]
466458
466534
+
Arg
ACG
[ENA]
¡û
>W2012337755
WIOL01000003
Alphaproteobacteria
Polymorphobacter fuscus D40P [WIOL]
466458
466534
+
Arg
ACG
[ENA]
¡û
>W2012468429
WVTD01000006
Alphaproteobacteria
Novosphingobium sp. FGD1 [WVTD]
155131
155055
-
Arg
ACG
[ENA]
¡û
>W2012468430
WVTD01000006
Alphaproteobacteria
Novosphingobium sp. FGD1 [WVTD]
155008
154932
-
Arg
ACG
[ENA]
¡û
>W2110023609
BMGD01000004
Alphaproteobacteria
Blastomonas aquatica CGMCC 1.12851 [BMGD]
227994
227918
-
Arg
ACG
[ENA]
¡û
>W2110027848
BMJM01000013
Alphaproteobacteria
Polymorphobacter glacialis CGMCC 1.15519 [BMJM]
24377
24301
-
Arg
ACG
[ENA]
¡û
>W2110290628
JACYUG010000017
Alphaproteobacteria
Sphingomonas sp. CFBP 8760 CFBP8760 [JACYUG]
38833
38757
-
Arg
ACG
[ENA]
¡û
>W2110663575
JAHXZS010000001
Alphaproteobacteria
Aquisediminimonas sediminicola CH68-4 [JAHXZS]
129232
129308
+
Arg
ACG
[ENA]
¡û
>W2110704964
JAIVLF010000005
Alphaproteobacteria
Novosphingobium profundi EaN21-2 [JAIVLF]
341209
341133
-
Arg
ACG
[ENA]
¡û
>W2110704965
JAIVLF010000005
Alphaproteobacteria
Novosphingobium profundi EaN21-2 [JAIVLF]
341082
341006
-
Arg
ACG
[ENA]
¡û
>W2110704966
JAIVLF010000005
Alphaproteobacteria
Novosphingobium profundi EaN21-2 [JAIVLF]
340955
340879
-
Arg
ACG
[ENA]
¡û
>W2110710056
JAIZDA010000033
Alphaproteobacteria
Novosphingobium sp. FKTRR1 [JAIZDA]
32536
32460
-
Arg
ACG
[ENA]
¡û
>W2110710057
JAIZDA010000033
Alphaproteobacteria
Novosphingobium sp. FKTRR1 [JAIZDA]
32382
32306
-
Arg
ACG
[ENA]
¡û
>C231230474
CP086594
Alphaproteobacteria
Sphingomonas radiodurans S9-5 [CP086594]
3317384
3317460
+
Arg
ACG
-
¡û
>C241282367
CP128492
Alphaproteobacteria
Novosphingobium resinovorum HR1a [CP128491, CP128492]
1187768
1187844
+
Arg
ACG
-
¡û
>C241282368
CP128492
Alphaproteobacteria
Novosphingobium resinovorum HR1a [CP128491, CP128492]
1187894
1187970
+
Arg
ACG
-
¡û
>C241368979
CP141944
Alphaproteobacteria
Novosphingobium sp. RL4 [CP141944]
2607650
2607574
-
Arg
ACG
-
¡û
>C241368980
CP141944
Alphaproteobacteria
Novosphingobium sp. RL4 [CP141944]
2607530
2607454
-
Arg
ACG
-
¡û
>C241368981
CP141944
Alphaproteobacteria
Novosphingobium sp. RL4 [CP141944]
2607398
2607322
-
Arg
ACG
-
¡û
>W2310022498
BSFC01000003
Alphaproteobacteria
Novosphingobium resinovorum VKM B-1172 [BSFC]
122170
122094
-
Arg
ACG
[ENA]
¡û
>W2310022499
BSFC01000003
Alphaproteobacteria
Novosphingobium resinovorum VKM B-1172 [BSFC]
122044
121968
-
Arg
ACG
[ENA]
¡û
>W1511352514
JROG01000003
Alphaproteobacteria
Sphingomonas sp. 35-24ZXX 35-24ZXX 35-24zxx [JROG]
361799
361875
+
Arg
ACG
[ENA]
¡û
>C121015271
CP003704
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 29191 [CP003704]
1444538
1444462
-
Arg
ACG
[Ensembl]
¡û
>C161003423
CP005188
Alphaproteobacteria
Sphingobium sp. MI1205 [CP005188, CP005189]
1695969
1695893
-
Arg
ACG
[Ensembl]
¡û
>W1610076689
BCYY01000002
Alphaproteobacteria
Sphingomonas pituitosa NBRC 102491 [BCYY]
157973
157897
-
Arg
ACG
[ENA]
¡û
>W1610076698
BCYY01000008
Alphaproteobacteria
Sphingomonas pituitosa NBRC 102491 [BCYY]
30413
30337
-
Arg
ACG
[ENA]
¡û
>W1610076943
BCZD01000014
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [BCZD]
30496
30572
+
Arg
ACG
[ENA]
¡û
>W1610590971
LDRW01000007
Alphaproteobacteria
Novosphingobium barchaimii [LDRW]
35204
35128
-
Arg
ACG
[ENA]
¡û
>W1610614801
LGJH01000060
Alphaproteobacteria
Novosphingobium sp. ST904 [LGJH]
129
53
-
Arg
ACG
[ENA]
¡û
>W1610614820
LGJH01000152
Alphaproteobacteria
Novosphingobium sp. ST904 [LGJH]
112734
112658
-
Arg
ACG
[ENA]
¡û
>W1610649299
LJHX01000069
Alphaproteobacteria
alpha proteobacterium AAP81b [LJHX]
7354
7278
-
Arg
ACG
[ENA]
¡û
>W1610719165
LLZQ01000001
Alphaproteobacteria
Novosphingobium sp. FSW06-99 [LLZQ]
292377
292453
+
Arg
ACG
[ENA]
¡û
>W1610719166
LLZQ01000001
Alphaproteobacteria
Novosphingobium sp. FSW06-99 [LLZQ]
292525
292601
+
Arg
ACG
[ENA]
¡û
>W1710074378
BCYY01000002
Alphaproteobacteria
Sphingomonas pituitosa NBRC 102491 [BCYY]
157973
157897
-
Arg
ACG
[ENA]
¡û
>W1710074387
BCYY01000008
Alphaproteobacteria
Sphingomonas pituitosa NBRC 102491 [BCYY]
30413
30337
-
Arg
ACG
[ENA]
¡û
>W1710074632
BCZD01000014
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [BCZD]
30496
30572
+
Arg
ACG
[ENA]
¡û
>W1710710251
LDRW01000007
Alphaproteobacteria
Novosphingobium barchaimii [LDRW]
35204
35128
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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