This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237223 (124 seq.)
>W1710799926
LJVG01000039
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
28914
28839
-
Lys
TTT
[ENA]
¡û
>W1710799927
LJVG01000039
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
28726
28651
-
Lys
TTT
[ENA]
¡û
>W1710799928
LJVG01000039
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
28614
28539
-
Lys
TTT
[ENA]
¡û
>W1710799929
LJVG01000039
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
28419
28344
-
Lys
TTT
[ENA]
¡û
>W1710799930
LJVG01000039
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
28224
28149
-
Lys
TTT
[ENA]
¡û
>W1710799931
LJVG01000039
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
28029
27954
-
Lys
TTT
[ENA]
¡û
>W1710803968
LJYX01000016
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
162956
162881
-
Lys
TTT
[ENA]
¡û
>W1710803969
LJYX01000016
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
162767
162692
-
Lys
TTT
[ENA]
¡û
>W1710803970
LJYX01000016
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
162655
162580
-
Lys
TTT
[ENA]
¡û
>W1710803971
LJYX01000016
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
162466
162391
-
Lys
TTT
[ENA]
¡û
>W1710803972
LJYX01000016
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
162280
162205
-
Lys
TTT
[ENA]
¡û
>W1710803973
LJYX01000016
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
162169
162094
-
Lys
TTT
[ENA]
¡û
>W131177225
ARKQ01000025
Gammaproteobacteria
Colwellia piezophila ATCC BAA-637 [ARKQ]
2515
2440
-
Lys
TTT
[ENA]
¡û
>W131177227
ARKQ01000026
Gammaproteobacteria
Colwellia piezophila ATCC BAA-637 [ARKQ]
266
191
-
Lys
TTT
[ENA]
¡û
>W131177228
ARKQ01000026
Gammaproteobacteria
Colwellia piezophila ATCC BAA-637 [ARKQ]
95
20
-
Lys
TTT
[ENA]
¡û
>W1711499189
MKQD01000079
Gammaproteobacteria
Thalassotalea sp. PP2-459 [MKQD]
688
613
-
Lys
TTT
[ENA]
¡û
>W1711499190
MKQD01000079
Gammaproteobacteria
Thalassotalea sp. PP2-459 [MKQD]
550
475
-
Lys
TTT
[ENA]
¡û
>W1711499191
MKQD01000079
Gammaproteobacteria
Thalassotalea sp. PP2-459 [MKQD]
276
201
-
Lys
TTT
[ENA]
¡û
>W1711947458
NBOC01000012
Gammaproteobacteria
Colwellia chukchiensis [NBOC]
107866
107941
+
Lys
TTT
[ENA]
¡û
>W1711947459
NBOC01000012
Gammaproteobacteria
Colwellia chukchiensis [NBOC]
107987
108062
+
Lys
TTT
[ENA]
¡û
>W1711947460
NBOC01000012
Gammaproteobacteria
Colwellia chukchiensis [NBOC]
108125
108200
+
Lys
TTT
[ENA]
¡û
>C171034539
CP014944
Gammaproteobacteria
Colwellia sp. PAMC 20917 [CP014944]
3777100
3777175
+
Lys
TTT
-
¡û
>C171034540
CP014944
Gammaproteobacteria
Colwellia sp. PAMC 20917 [CP014944]
3777259
3777334
+
Lys
TTT
-
¡û
>C171034541
CP014944
Gammaproteobacteria
Colwellia sp. PAMC 20917 [CP014944]
3777425
3777500
+
Lys
TTT
-
¡û
>C171034542
CP014944
Gammaproteobacteria
Colwellia sp. PAMC 20917 [CP014944]
3777705
3777780
+
Lys
TTT
-
¡û
>C006786
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
1782999
1783074
+
Lys
TTT
[Ensembl]
¡û
>C006787
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
1783184
1783259
+
Lys
TTT
[Ensembl]
¡û
>C006788
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
1783296
1783371
+
Lys
TTT
[Ensembl]
¡û
>C006789
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
1783465
1783540
+
Lys
TTT
[Ensembl]
¡û
>C006790
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
1783574
1783649
+
Lys
TTT
[Ensembl]
¡û
>C006791
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
1783817
1783892
+
Lys
TTT
[Ensembl]
¡û
>WENV182543581
OJBB01005999
[OJBB] seawater metagenome; Sea water
79
4
-
Lys
TTT
[ENA]
¢þ
>WENV182543673
OJBC01000186
[OJBC] seawater metagenome; Sea water
27617
27692
+
Lys
TTT
[ENA]
¢þ
>WENV182544765
OJBJ01001748
[OJBJ] seawater metagenome; Sea water
2469
2394
-
Lys
TTT
[ENA]
¢þ
>WENV182544766
OJBJ01001748
[OJBJ] seawater metagenome; Sea water
2348
2273
-
Lys
TTT
[ENA]
¢þ
>WENV182544767
OJBJ01001748
[OJBJ] seawater metagenome; Sea water
2188
2113
-
Lys
TTT
[ENA]
¢þ
>WENV182547126
OJBR01001753
[OJBR] seawater metagenome; Sea water
3996
4071
+
Lys
TTT
[ENA]
¢þ
>WENV182547801
OJBT01006923
[OJBT] seawater metagenome; Sea water
138
213
+
Lys
TTT
[ENA]
¢þ
>WENV182560450
OJDU01001478
[OJDU] seawater metagenome; Sea water
2590
2665
+
Lys
TTT
[ENA]
¢þ
>WENV182561205
OJDV01014095
[OJDV] seawater metagenome; Sea water
190
265
+
Lys
TTT
[ENA]
¢þ
>WENV182567519
OJEO01003395
[OJEO] seawater metagenome; Sea water
630
555
-
Lys
TTT
[ENA]
¢þ
>WENV182568184
OJER01000211
[OJER] seawater metagenome; Sea water
2950
3025
+
Lys
TTT
[ENA]
¢þ
>WENV182575309
OJFU01004871
[OJFU] seawater metagenome; Sea water
261
186
-
Lys
TTT
[ENA]
¢þ
>WENV182576942
OJGB01001809
[OJGB] seawater metagenome; Sea water
171
96
-
Lys
TTT
[ENA]
¢þ
>WENV182576980
OJGC01000103
[OJGC] seawater metagenome; Sea water
27617
27692
+
Lys
TTT
[ENA]
¢þ
>WENV182577682
OJGH01000721
[OJGH] seawater metagenome; Sea water
5146
5221
+
Lys
TTT
[ENA]
¢þ
>WENV182586497
OJHK01000689
[OJHK] seawater metagenome; Sea water
5817
5892
+
Lys
TTT
[ENA]
¢þ
>WENV182588105
OJHO01003707
[OJHO] seawater metagenome; Sea water
76
151
+
Lys
TTT
[ENA]
¢þ
>WENV182588290
OJHR01000234
[OJHR] seawater metagenome; Sea water
5644
5719
+
Lys
TTT
[ENA]
¢þ
>WENV183056208
OLHI01001475
[OLHI] seawater metagenome; Sea water
181
106
-
Lys
TTT
[ENA]
¢þ
>WENV183064950
OLII01004771
[OLII] seawater metagenome; Sea water
3112
3187
+
Lys
TTT
[ENA]
¢þ
>WENV170537642
CEWR01019587
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
114
189
+
Lys
TTT
[ENA]
¢þ
>WENV170537812
CEWR01030006
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
826
901
+
Lys
TTT
[ENA]
¢þ
>WENV170646731
JQIA01002383
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
9983
10055
+
Lys
TTT
[ENA]
¢þ
>WENV170704320
LLEJ01002840
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
262
187
-
Lys
TTT
[ENA]
¢þ
>WENV170704321
LLEJ01002840
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
75
1
-
Lys
TTT
[ENA]
¢þ
>WENV170780337
MAAA01029067
[MAAA] seawater metagenome; sample BD02T6 sea water enriched with oil for 6 days
1087
1162
+
Lys
TTT
[ENA]
¢þ
>WENV170780972
MAAB01028906
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
6774
6699
-
Lys
TTT
[ENA]
¢þ
>WENV170780973
MAAB01028906
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
6521
6446
-
Lys
TTT
[ENA]
¢þ
>WENV170780974
MAAB01028906
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
6410
6335
-
Lys
TTT
[ENA]
¢þ
>WENV170781020
MAAB01029083
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
1192
1117
-
Lys
TTT
[ENA]
¢þ
>WENV170781021
MAAB01029083
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
1020
945
-
Lys
TTT
[ENA]
¢þ
>WENV170781022
MAAB01029083
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
908
833
-
Lys
TTT
[ENA]
¢þ
>WENV170781023
MAAB01029083
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
736
661
-
Lys
TTT
[ENA]
¢þ
>WENV170781024
MAAB01029083
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
624
549
-
Lys
TTT
[ENA]
¢þ
>WENV170781068
MAAB01029282
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
16321
16396
+
Lys
TTT
[ENA]
¢þ
>WENV170781265
MAAB01030487
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
14
89
+
Lys
TTT
[ENA]
¢þ
>WENV170781266
MAAB01030487
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
125
200
+
Lys
TTT
[ENA]
¢þ
>WENV170781267
MAAB01030487
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
244
319
+
Lys
TTT
[ENA]
¢þ
>WENV170781268
MAAB01030487
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
355
430
+
Lys
TTT
[ENA]
¢þ
>WENV170783201
MAAC01014837
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
28
103
+
Lys
TTT
[ENA]
¢þ
>WENV170783202
MAAC01014837
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
147
222
+
Lys
TTT
[ENA]
¢þ
>WENV170783203
MAAC01014837
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
258
333
+
Lys
TTT
[ENA]
¢þ
>WENV170822094
MDSY01034003
[MDSY] marine metagenome; seawater
6
81
+
Lys
TTT
[ENA]
¢þ
>W1810155073
PJAI01000019
Gammaproteobacteria
Colwellia echini A3T [PJAI]
121904
121829
-
Lys
TTT
[ENA]
¡û
>W1810155074
PJAI01000019
Gammaproteobacteria
Colwellia echini A3T [PJAI]
121707
121632
-
Lys
TTT
[ENA]
¡û
>W1810155075
PJAI01000019
Gammaproteobacteria
Colwellia echini A3T [PJAI]
121594
121519
-
Lys
TTT
[ENA]
¡û
>W1810155076
PJAI01000019
Gammaproteobacteria
Colwellia echini A3T [PJAI]
121475
121400
-
Lys
TTT
[ENA]
¡û
>W1810155356
PJAQ01000017
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
145400
145325
-
Lys
TTT
[ENA]
¡û
>W1810155357
PJAQ01000017
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
145208
145133
-
Lys
TTT
[ENA]
¡û
>W1810155358
PJAQ01000017
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
145096
145021
-
Lys
TTT
[ENA]
¡û
>W1810155359
PJAQ01000017
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
144922
144847
-
Lys
TTT
[ENA]
¡û
>W1810155360
PJAQ01000017
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
144813
144738
-
Lys
TTT
[ENA]
¡û
>W1810155361
PJAQ01000017
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
144646
144571
-
Lys
TTT
[ENA]
¡û
>W1810155362
PJAQ01000017
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
144353
144278
-
Lys
TTT
[ENA]
¡û
>W1810155563
PJAU01000055
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
76497
76572
+
Lys
TTT
[ENA]
¡û
>W1810155564
PJAU01000055
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
76682
76757
+
Lys
TTT
[ENA]
¡û
>W1810155565
PJAU01000055
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
76794
76869
+
Lys
TTT
[ENA]
¡û
>W1810155566
PJAU01000055
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
76980
77055
+
Lys
TTT
[ENA]
¡û
>W1810155567
PJAU01000055
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
77089
77164
+
Lys
TTT
[ENA]
¡û
>W1810155568
PJAU01000055
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
77253
77328
+
Lys
TTT
[ENA]
¡û
>W1810155569
PJAU01000055
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
77419
77494
+
Lys
TTT
[ENA]
¡û
>W1810155570
PJAU01000055
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
77581
77656
+
Lys
TTT
[ENA]
¡û
>W1810155972
PJBA01000002
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
84926
85001
+
Lys
TTT
[ENA]
¡û
>W1810155973
PJBA01000002
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
85125
85200
+
Lys
TTT
[ENA]
¡û
>W1810155974
PJBA01000002
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
85237
85312
+
Lys
TTT
[ENA]
¡û
>W1810155975
PJBA01000002
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
85406
85481
+
Lys
TTT
[ENA]
¡û
>W1810155976
PJBA01000002
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
85515
85590
+
Lys
TTT
[ENA]
¡û
>W1810155977
PJBA01000002
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
85758
85833
+
Lys
TTT
[ENA]
¡û
>W1810155978
PJBA01000002
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
86266
86341
+
Lys
TTT
[ENA]
¡û
>W1810735872
QOLD01000037
Gammaproteobacteria
Candidatus Colwellia aromaticivorans Bin11-node4 [QOLD]
11696
11771
+
Lys
TTT
[ENA]
¡û
>W1810735873
QOLD01000037
Gammaproteobacteria
Candidatus Colwellia aromaticivorans Bin11-node4 [QOLD]
11873
11948
+
Lys
TTT
[ENA]
¡û
>W1810735874
QOLD01000037
Gammaproteobacteria
Candidatus Colwellia aromaticivorans Bin11-node4 [QOLD]
12051
12126
+
Lys
TTT
[ENA]
¡û
>W1511322873
JQEC01000015
Gammaproteobacteria
Colwellia psychrerythraea GAB14E [JQEC]
66547
66472
-
Lys
TTT
[ENA]
¡û
>W1511322945
JQED01000007
Gammaproteobacteria
Colwellia psychrerythraea ND2E [JQED]
70927
71002
+
Lys
TTT
[ENA]
¡û
>W1511322946
JQED01000007
Gammaproteobacteria
Colwellia psychrerythraea ND2E [JQED]
71110
71185
+
Lys
TTT
[ENA]
¡û
>W1511322947
JQED01000007
Gammaproteobacteria
Colwellia psychrerythraea ND2E [JQED]
71221
71296
+
Lys
TTT
[ENA]
¡û
>W1511322948
JQED01000007
Gammaproteobacteria
Colwellia psychrerythraea ND2E [JQED]
71340
71415
+
Lys
TTT
[ENA]
¡û
>W1511322949
JQED01000007
Gammaproteobacteria
Colwellia psychrerythraea ND2E [JQED]
71452
71527
+
Lys
TTT
[ENA]
¡û
>C161052275
CP013145
Gammaproteobacteria
Colwellia sp. MT41 [CP013145]
2608677
2608602
-
Lys
TTT
[Ensembl]
¡û
>W1610663883
LJVG01000039
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
28914
28839
-
Lys
TTT
[ENA]
¡û
>W1610663884
LJVG01000039
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
28726
28651
-
Lys
TTT
[ENA]
¡û
>W1610663885
LJVG01000039
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
28614
28539
-
Lys
TTT
[ENA]
¡û
>W1610663886
LJVG01000039
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
28419
28344
-
Lys
TTT
[ENA]
¡û
>W1610663887
LJVG01000039
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
28224
28149
-
Lys
TTT
[ENA]
¡û
>W1610663888
LJVG01000039
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
28029
27954
-
Lys
TTT
[ENA]
¡û
>W1610667825
LJYX01000016
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
162956
162881
-
Lys
TTT
[ENA]
¡û
>W1610667826
LJYX01000016
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
162767
162692
-
Lys
TTT
[ENA]
¡û
>W1610667827
LJYX01000016
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
162655
162580
-
Lys
TTT
[ENA]
¡û
>W1610667828
LJYX01000016
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
162466
162391
-
Lys
TTT
[ENA]
¡û
>W1610667829
LJYX01000016
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
162280
162205
-
Lys
TTT
[ENA]
¡û
>W1610667830
LJYX01000016
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
162169
162094
-
Lys
TTT
[ENA]
¡û
>W1730003010
BDQM01000042
Gammaproteobacteria
Colwellia marinimaniae [BDQM]
27561
27486
-
Lys
TTT
[ENA]
¡û
>W1710087391
BDQM01000151
Gammaproteobacteria
Colwellia marinimaniae [BDQM]
188
263
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK