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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237240 (33 seq.)
>W1710811902
LKIW01000096
Betaproteobacteria
Chromobacterium subtsugae violaceum [LKIW]
43866
43791
-
Ala
CGC
[ENA]
¡û
>W1711005537
LQNP01000029
Betaproteobacteria
Chromobacterium sp. F49 [LQNP]
186376
186451
+
Ala
CGC
[ENA]
¡û
>W131050907
AMXE01000006
Betaproteobacteria
Thauera linaloolentis 47Lol = DSM 12138 [AMXE]
454
529
+
Ala
CGC
[ENA]
¡û
>W131176279
ARJX01000041
Betaproteobacteria
Aromatoleum toluclasticum ATCC 700605 [ARJX]
85997
86072
+
Ala
CGC
[ENA]
¡û
>C171085179
CP018839
Betaproteobacteria
Thauera chlorobenzoica 3CB1 [CP018839]
3361377
3361302
-
Ala
CGC
-
¡û
>C001386
CR555306
Betaproteobacteria
Aromatoleum aromaticum EbN1 [CR555306]
55689
55614
-
Ala
CGC
[Ensembl]
¡û
>WENV180026138
FTIR01146262
[FTIR] metagenome; soil
125
50
-
Ala
CGC
[ENA]
¢þ
>WENV181144708
OEHO01068296
[OEHO] metagenome; unknown
155
80
-
Ala
CGC
[ENA]
¢þ
>WENV170009293
APMI01000040
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
118768
118843
+
Ala
CGC
[ENA]
¢þ
>WENV170551295
CXWJ01003224
[CXWJ] wastewater metagenome; activated sludge
3005
3080
+
Ala
CGC
[ENA]
¢þ
>WENV170645830
JPYU01110607
[JPYU] wastewater metagenome; domestic wastewater sediment without any treatment
149
224
+
Ala
CGC
[ENA]
¢þ
>WENV170691236
LFRM01387986
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
189
264
+
Ala
CGC
[ENA]
¢þ
>WENV170714043
LNFM01051772
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
209
134
-
Ala
CGC
[ENA]
¢þ
>C181093167
CP024028
Betaproteobacteria
Chromobacterium violaceum CV1192 [CP024028]
886000
886075
+
Ala
CGC
-
¡û
>C181117066
CP025429
Betaproteobacteria
Chromobacterium sp. ATCC 53434 [CP025429]
327053
327128
+
Ala
CGC
-
¡û
>C181164189
CP028339
Betaproteobacteria
Thauera aromatica K172 [CP028339]
2811961
2811886
-
Ala
CGC
-
¡û
>C191019162
CP021731
Betaproteobacteria
Azoarcus sp. DN11 [CP021731]
1518936
1519011
+
Ala
CGC
-
¡û
>W141561692
JHYR01000002
Betaproteobacteria
Thauera linaloolentis 47Lol = DSM 12138 [JHYR]
18160
18235
+
Ala
CGC
[ENA]
¡û
>W1910803483
MTBD01000006
Betaproteobacteria
Chromobacterium amazonense 56AF [MTBD]
80431
80506
+
Ala
CGC
[ENA]
¡û
>W1810184729
PKBZ01000001
Betaproteobacteria
Chromobacterium violaceum ATCC 315322 [PKBZ]
2073636
2073561
-
Ala
CGC
[ENA]
¡û
>W1810266867
PQWB01000037
Betaproteobacteria
Chromobacterium alticapitis MWU14-2602 [PQWB]
4126
4051
-
Ala
CGC
[ENA]
¡û
>C151076173
CP011072
Betaproteobacteria
Azoarcus sp. CIB [CP011072]
1116166
1116241
+
Ala
CGC
-
¡û
>W1511400012
JTGE01000075
Betaproteobacteria
Chromobacterium piscinae ND17 [JTGE]
35916
35991
+
Ala
CGC
[ENA]
¡û
>W1511481006
JWJN01000014
Betaproteobacteria
Chromobacterium subtsugae F49 [JWJN]
186367
186442
+
Ala
CGC
[ENA]
¡û
>W1511525851
JYGI01000036
Betaproteobacteria
Chromobacterium violaceum L_1B5_1 [JYGI]
37046
36971
-
Ala
CGC
[ENA]
¡û
>W1511581007
LARU01000002
Betaproteobacteria
Azoarcus sp. PA01 [LARU]
262257
262182
-
Ala
CGC
[ENA]
¡û
>W1511622821
LCWO01000011
Betaproteobacteria
Chromobacterium subtsugae MWU3525 [LCWO]
28552
28477
-
Ala
CGC
[ENA]
¡û
>W1511622992
LCWQ01000029
Betaproteobacteria
Chromobacterium subtsugae MWU2576 [LCWQ]
39683
39758
+
Ala
CGC
[ENA]
¡û
>C131000290
AP012304
Betaproteobacteria
Azoarcus sp. KH32C [AP012304]
1627796
1627871
+
Ala
CGC
[Ensembl]
¡û
>W1610675999
LKIW01000096
Betaproteobacteria
Chromobacterium subtsugae violaceum [LKIW]
43866
43791
-
Ala
CGC
[ENA]
¡û
>W1610856187
LQNP01000029
Betaproteobacteria
Chromobacterium sp. F49 [LQNP]
186376
186451
+
Ala
CGC
[ENA]
¡û
>W1710539473
FNVJ01000027
Betaproteobacteria
Thauera chlorobenzoica [FNVJ]
24999
25074
+
Ala
CGC
[ENA]
¡û
>W1710595756
FTMD01000023
Betaproteobacteria
Aromatoleum tolulyticum tolulyticus [FTMD]
56979
57054
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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