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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237291 (69 seq.)
>W131003029
AHAB01000002
Spirochaetota
Treponema denticola SP23 [AHAB]
104662
104736
+
Gln
TTG
[ENA]
¡û
>C025735
AE000520
Spirochaetota
Treponema pallidum subsp. pallidum str. Nichols [AE000520]
395663
395735
+
Gln
TTG
[Ensembl]
¡û
>W141005527
AGDV01000001
Spirochaetota
Treponema denticola H-22 [AGDV]
149753
149827
+
Gln
TTG
[ENA]
¡û
>W141005728
AGDZ01000028
Spirochaetota
Treponema denticola SP33 [AGDZ]
63582
63656
+
Gln
TTG
[ENA]
¡û
>W141005769
AGEA01000016
Spirochaetota
Treponema denticola SP37 [AGEA]
104708
104782
+
Gln
TTG
[ENA]
¡û
>WENV180548403
OCIW01013933
[OCIW] human oral metagenome; human oral
4
76
+
Gln
TTG
[ENA]
¢þ
>WENV180551753
OCJG01050629
[OCJG] human oral metagenome; human oral
96
168
+
Gln
TTG
[ENA]
¢þ
>W141055886
AOTM01000025
Spirochaetota
Treponema pedis str. T M1 [AOTM]
26186
26260
+
Gln
TTG
[ENA]
¡û
>W141055957
AOTN01000211
Spirochaetota
Treponema pedis str. B 683 [AOTN]
14290
14364
+
Gln
TTG
[ENA]
¡û
>W141056022
AOTP01000085
Spirochaetota
Treponema pedis isoE1186 [AOTP]
4852
4926
+
Gln
TTG
[ENA]
¡û
>W141056060
AOTQ01000039
Spirochaetota
Treponema pedis isoM1220 [AOTQ]
15437
15363
-
Gln
TTG
[ENA]
¡û
>W141056125
AOTR01000120
Spirochaetota
Treponema pedis isoM1224 [AOTR]
2185
2111
-
Gln
TTG
[ENA]
¡û
>W141064685
AQCF01000034
Spirochaetota
Treponema phagedenis 4A [AQCF]
87839
87913
+
Gln
TTG
[ENA]
¡û
>WENV180722101
ODGL01087446
[ODGL] human metagenome; G_DNA_Subgingival plaque
55
130
+
Gln
TTG
[ENA]
¢þ
>WENV180727916
ODGU01016047
[ODGU] human metagenome; G_DNA_Supragingival plaque
1836
1764
-
Gln
TTG
[ENA]
¢þ
>WENV180729334
ODGU01339196
[ODGU] human metagenome; G_DNA_Supragingival plaque
1
73
+
Gln
TTG
[ENA]
¢þ
>WENV180734278
ODGZ01004659
[ODGZ] human metagenome; G_DNA_Supragingival plaque
98
24
-
Gln
TTG
[ENA]
¢þ
>WENV180751871
ODHS01240981
[ODHS] human metagenome; G_DNA_Supragingival plaque
150
78
-
Gln
TTG
[ENA]
¢þ
>WENV180788939
ODIS01160874
[ODIS] human metagenome; G_DNA_Supragingival plaque
244
316
+
Gln
TTG
[ENA]
¢þ
>WENV180798038
ODJB01223524
[ODJB] human metagenome; G_DNA_Supragingival plaque
342
270
-
Gln
TTG
[ENA]
¢þ
>WENV180809759
ODJK01042819
[ODJK] human metagenome; G_DNA_Subgingival plaque
95
167
+
Gln
TTG
[ENA]
¢þ
>WENV180865335
ODLI01123309
[ODLI] human metagenome; G_DNA_Buccal mucosa
123
48
-
Gln
TTG
[ENA]
¢þ
>WENV180924877
ODTK01020599
[ODTK] human metagenome; G_DNA_Supragingival plaque
87
15
-
Gln
TTG
[ENA]
¢þ
>WENV180937849
ODTX01000119
[ODTX] human metagenome; G_DNA_Supragingival plaque
55980
55908
-
Gln
TTG
[ENA]
¢þ
>WENV180939622
ODTX01058615
[ODTX] human metagenome; G_DNA_Supragingival plaque
683
757
+
Gln
TTG
[ENA]
¢þ
>WENV180950223
ODUG01118433
[ODUG] human metagenome; G_DNA_Tongue dorsum
109
37
-
Gln
TTG
[ENA]
¢þ
>WENV180951347
ODUH01018417
[ODUH] human metagenome; G_DNA_Subgingival plaque
523
597
+
Gln
TTG
[ENA]
¢þ
>WENV180952133
ODUH01136617
[ODUH] human metagenome; G_DNA_Subgingival plaque
12
84
+
Gln
TTG
[ENA]
¢þ
>WENV180976925
ODUY01348959
[ODUY] human metagenome; G_DNA_Supragingival plaque
160
88
-
Gln
TTG
[ENA]
¢þ
>WENV181038827
ODXQ01005087
[ODXQ] human metagenome; G_DNA_Tongue dorsum
1953
1881
-
Gln
TTG
[ENA]
¢þ
>WENV181067806
ODZI01056925
[ODZI] human metagenome; G_DNA_Supragingival plaque
595
520
-
Gln
TTG
[ENA]
¢þ
>WENV181069636
ODZZ01132832
[ODZZ] human metagenome; G_DNA_Tongue dorsum
145
71
-
Gln
TTG
[ENA]
¢þ
>WENV181074231
OEAO01004815
[OEAO] human metagenome; G_DNA_Tongue dorsum
5219
5291
+
Gln
TTG
[ENA]
¢þ
>WENV181078538
OEAS01000121
[OEAS] human metagenome; G_DNA_Supragingival plaque
27617
27689
+
Gln
TTG
[ENA]
¢þ
>WENV181091194
OEBC01016686
[OEBC] human metagenome; G_DNA_Supragingival plaque
823
751
-
Gln
TTG
[ENA]
¢þ
>WENV181113635
OEEL01053654
[OEEL] human metagenome; G_DNA_Tongue dorsum
314
242
-
Gln
TTG
[ENA]
¢þ
>WENV181138707
OEGN01000498
[OEGN] human metagenome; G_DNA_Tongue dorsum
20137
20209
+
Gln
TTG
[ENA]
¢þ
>WENV181159258
OEIH01121790
[OEIH] human metagenome; G_DNA_Supragingival plaque
209
281
+
Gln
TTG
[ENA]
¢þ
>WENV181178649
OEJT01000112
[OEJT] human metagenome; G_DNA_Supragingival plaque
55990
55918
-
Gln
TTG
[ENA]
¢þ
>C191179234
CP040555
Spirochaetota
Treponema pallidum subsp. pallidum X-4 [CP040555]
396856
396930
+
Gln
TTG
-
¡û
>C141003664
CP004120
Spirochaetota
Treponema pedis str. T A4 [CP004120]
1585591
1585665
+
Gln
TTG
[Ensembl]
¡û
>C151004483
CP003679
Spirochaetota
Treponema pallidum subsp. pallidum str. Sea 81-4 [CP003679]
396900
396974
+
Gln
TTG
[Ensembl]
¡û
>C151046043
CP009228
Spirochaetota
Treponema putidum OMZ 758 [CP009228]
2714236
2714162
-
Gln
TTG
[Ensembl]
¡û
>W10106155
ACYH01000018
Spirochaetota
Treponema vincentii ATCC 35580 [ACYH]
27277
27205
-
Gln
TTG
[ENA]
¡û
>W1510074539
CDNC01000010
Spirochaetota
Treponema phagedenis V1 [CDNC]
59512
59586
+
Gln
TTG
[ENA]
¡û
>C10113584
CP001752
Spirochaetota
Treponema pallidum subsp. pallidum str. Chicago [CP001752]
396886
396960
+
Gln
TTG
[Ensembl]
¡û
>C10113628
CP000805
Spirochaetota
Treponema pallidum subsp. pallidum SS14 [CP000805]
396842
396916
+
Gln
TTG
[Ensembl]
¡û
>W11108478
ACYH01000018
Spirochaetota
Treponema vincentii ATCC 35580 [ACYH]
27277
27205
-
Gln
TTG
[ENA]
¡û
>W11115140
ADEC01000014
Spirochaetota
Treponema denticola F0402 [ADEC]
145320
145394
+
Gln
TTG
[ENA]
¡û
>C11122894
CP002103
Spirochaetota
Treponema paraluiscuniculi Cuniculi A [CP002103]
392500
392574
+
Gln
TTG
[Ensembl]
¡û
>C121002402
CP002374
Spirochaetota
Treponema pallidum subsp. pertenue str. SamoaD [CP002374]
397015
397089
+
Gln
TTG
[Ensembl]
¡û
>C121002447
CP002375
Spirochaetota
Treponema pallidum subsp. pertenue str. CDC2 [CP002375]
397349
397423
+
Gln
TTG
[Ensembl]
¡û
>C121002492
CP002376
Spirochaetota
Treponema pallidum subsp. pertenue str. Gauthier [CP002376]
397311
397385
+
Gln
TTG
[Ensembl]
¡û
>C121006097
CP003115
Spirochaetota
Treponema pallidum subsp. pallidum DAL-1 [CP003115]
396874
396948
+
Gln
TTG
[Ensembl]
¡û
>C161017255
CP007548
Spirochaetota
Treponema pallidum subsp. endemicum str. Bosnia A [CP007548]
395073
395147
+
Gln
TTG
[Ensembl]
¡û
>C161028020
CP010558
Spirochaetota
Treponema pallidum subsp. pallidum Chicago Population [CP010558]
396788
396862
+
Gln
TTG
-
¡û
>C161028064
CP010559
Spirochaetota
Treponema pallidum subsp. pallidum CDC-A [CP010559]
396788
396862
+
Gln
TTG
-
¡û
>C161028108
CP010560
Spirochaetota
Treponema pallidum subsp. pallidum Nichols Houston [CP010560]
395683
395757
+
Gln
TTG
-
¡û
>C161028152
CP010561
Spirochaetota
Treponema pallidum subsp. pallidum Nichols Houston [CP010561]
396728
396802
+
Gln
TTG
-
¡û
>C161028196
CP010562
Spirochaetota
Treponema pallidum subsp. pallidum UW074B [CP010562]
396862
396936
+
Gln
TTG
-
¡û
>C161028240
CP010563
Spirochaetota
Treponema pallidum subsp. pallidum UW189B [CP010563]
396883
396957
+
Gln
TTG
-
¡û
>C161028285
CP010564
Spirochaetota
Treponema pallidum subsp. pallidum UW228B [CP010564]
396853
396927
+
Gln
TTG
-
¡û
>C161028329
CP010565
Spirochaetota
Treponema pallidum subsp. pallidum UW254B [CP010565]
396853
396927
+
Gln
TTG
-
¡û
>C161028373
CP010566
Spirochaetota
Treponema pallidum subsp. pallidum UW391B [CP010566]
396851
396925
+
Gln
TTG
-
¡û
>C161084178
CP015162
Spirochaetota
Treponema pallidum subsp. pallidum Amoy [CP015162]
260475
260549
+
Gln
TTG
-
¡û
>C131001859
CP003064
Spirochaetota
Treponema pallidum subsp. pallidum str. Mexico A [CP003064]
396844
396918
+
Gln
TTG
[Ensembl]
¡û
>C131009490
CP003902
Spirochaetota
Treponema pallidum str. Fribourg-Blanc [CP003902]
397357
397431
+
Gln
TTG
[Ensembl]
¡û
>C131011351
CP004010
Spirochaetota
Treponema pallidum subsp. pallidum str. Nichols [CP004010]
396820
396894
+
Gln
TTG
-
¡û
>C131011395
CP004011
Spirochaetota
Treponema pallidum subsp. pallidum SS14 [CP004011]
396856
396930
+
Gln
TTG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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