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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237353 (90 seq.)
>W1710786223
LJIS01000129
Actinomycetota
Rhodococcus sp. ADH [LJIS]
350328
350403
+
Arg
CCT
[ENA]
¡û
>W1710876708
LMPL01000004
Actinomycetota
Williamsia sp. Leaf354 [LMPL]
533791
533718
-
Arg
CCT
[ENA]
¡û
>W1710889249
LNAK01000043
Actinomycetota
Rhodococcus sp. KB6 [LNAK]
724350
724275
-
Arg
CCT
[ENA]
¡û
>W1710899242
LNIU01000007
Actinomycetota
Prescottella equi [LNIU]
519301
519226
-
Arg
CCT
[ENA]
¡û
>W1710909137
LNQH01000002
Actinomycetota
Rhodococcus qingshengii enclensis [LNQH]
117195
117270
+
Arg
CCT
[ENA]
¡û
>W1710994906
LPZM01000049
Actinomycetota
Rhodococcus sp. AJR001 [LPZM]
87099
87174
+
Arg
CCT
[ENA]
¡û
>W1711050225
LRRJ01000015
Actinomycetota
Rhodococcus qingshengii [LRRJ]
235954
235879
-
Arg
CCT
[ENA]
¡û
>W1711138342
LVCT01000040
Actinomycetota
Rhodococcus sp. EPR-134 [LVCT]
7166
7091
-
Arg
CCT
[ENA]
¡û
>W1711168048
LVXC01000002
Actinomycetota
Rhodococcus qingshengii [LVXC]
2181516
2181441
-
Arg
CCT
[ENA]
¡û
>W1711179152
LWHK01000089
Actinomycetota
Rhodococcus sp. 1139 [LWHK]
7277
7202
-
Arg
CCT
[ENA]
¡û
>W1711252821
LYPG01000049
Actinomycetota
Rhodococcus erythropolis [LYPG]
256144
256217
+
Arg
CCT
[ENA]
¡û
>W1711261797
LYXB01000001
Actinomycetota
Rhodococcus qingshengii [LYXB]
276858
276931
+
Arg
CCT
[ENA]
¡û
>W1711351268
MDCH01000004
Actinomycetota
Rhodococcus erythropolis [MDCH]
480993
481068
+
Arg
CCT
[ENA]
¡û
>W1711475766
MJVD01000055
Actinomycetota
Rhodococcus erythropolis 1159 [MJVD]
241547
241472
-
Arg
CCT
[ENA]
¡û
>W1711518838
MLKO01000001
Actinomycetota
Rhodococcus erythropolis [MLKO]
1395381
1395306
-
Arg
CCT
[ENA]
¡û
>W1711577177
MNPP01000001
Actinomycetota
Rhodococcus sp. D-1 [MNPP]
524352
524427
+
Arg
CCT
[ENA]
¡û
>W1711666249
MRBQ01000012
Actinomycetota
Rhodococcus erythropolis [MRBQ]
33521
33446
-
Arg
CCT
[ENA]
¡û
>W1711705184
MSQF01000008
Actinomycetota
Rhodococcus sp. YL-0 [MSQF]
151288
151363
+
Arg
CCT
[ENA]
¡û
>W1711738383
MUBD01000003
Actinomycetota
Rhodococcus qingshengii [MUBD]
1296747
1296672
-
Arg
CCT
[ENA]
¡û
>W1711766893
MUZB01000002
Actinomycetota
Rhodococcus sp. 66b [MUZB]
233158
233083
-
Arg
CCT
[ENA]
¡û
>C171034417
CP014941
Actinomycetota
Rhodococcus sp. BH4 [CP014941]
4747687
4747762
+
Arg
CCT
-
¡û
>C171060523
CP017299
Actinomycetota
Rhodococcus sp. YL-1 [CP017299]
4747225
4747300
+
Arg
CCT
-
¡û
>W131087785
AODN01000006
Actinomycetota
Rhodococcus qingshengii BKS 20-40 [AODN]
96852
96927
+
Arg
CCT
[ENA]
¡û
>WENV180100218
OAOL01000478
[OAOL] sediment metagenome; sediment
1384
1309
-
Arg
CCT
[ENA]
¢þ
>WENV180100309
OAOM01006001
[OAOM] sediment metagenome; sediment
202
277
+
Arg
CCT
[ENA]
¢þ
>WENV180261114
OBEQ011263568
[OBEQ] groundwater metagenome; groundwater
1995
1920
-
Arg
CCT
[ENA]
¢þ
>WENV180354684
OBNE01003566
[OBNE] groundwater metagenome; groundwater
12592
12517
-
Arg
CCT
[ENA]
¢þ
>W141071712
ASJJ01000001
Actinomycetota
Rhodococcus rhodochrous ATCC 17895 [ASJJ]
116972
117047
+
Arg
CCT
[ENA]
¡û
>W141072049
ASKF01000008
Actinomycetota
Rhodococcus erythropolis R138 [ASKF]
465591
465666
+
Arg
CCT
[ENA]
¡û
>W141091834
AUZK01000002
Actinomycetota
Rhodococcus erythropolis DN1 [AUZK]
383177
383102
-
Arg
CCT
[ENA]
¡û
>W141094462
AVCO01000047
Actinomycetota
Rhodococcus sp. P27 [AVCO]
292185
292258
+
Arg
CCT
[ENA]
¡û
>W141238676
BBLL01000204
Actinomycetota
Rhodococcus erythropolis [BBLL]
38246
38321
+
Arg
CCT
[ENA]
¡û
>C181089324
CP023720
Actinomycetota
Rhodococcus sp. H-CA8f [CP023720]
1604938
1604863
-
Arg
CCT
-
¡û
>C181124594
CP025959
Actinomycetota
Rhodococcus qingshengii djl-6-2 [CP025959]
4869163
4869238
+
Arg
CCT
-
¡û
>C191120348
CP034152
Actinomycetota
Rhodococcus sp. NJ-530 [CP034152]
4831410
4831485
+
Arg
CCT
-
¡û
>W141727247
JNCU01000007
Actinomycetota
Rhodococcus qingshengii [JNCU]
151756
151831
+
Arg
CCT
[ENA]
¡û
>W141755690
JNWS01000007
Actinomycetota
Rhodococcus rhodochrous [JNWS]
350772
350699
-
Arg
CCT
[ENA]
¡û
>W141773410
JOIL01000002
Actinomycetota
Rhodococcus erythropolis [JOIL]
92168
92243
+
Arg
CCT
[ENA]
¡û
>W141773468
JOIM01000002
Actinomycetota
Rhodococcus opacus [JOIM]
392962
392887
-
Arg
CCT
[ENA]
¡û
>W09132150
ACNO01000001
Actinomycetota
Rhodococcus erythropolis SK121 [ACNO]
19286
19361
+
Arg
CCT
[ENA]
¡û
>W1910128892
BHXB01000001
Actinomycetota
Rhodococcus erythropolis JCM 3201 [BHXB]
4746227
4746302
+
Arg
CCT
[ENA]
¡û
>C09108730
AP008957
Actinomycetota
Rhodococcus erythropolis PR4 [AP008957]
4936020
4936095
+
Arg
CCT
[Ensembl]
¡û
>C141001833
CP003761
Actinomycetota
Rhodococcus erythropolis CCM2595 [CP003761]
4660376
4660451
+
Arg
CCT
[Ensembl]
¡û
>W1910637683
LQWU01000011
Actinomycetota
Rhodococcus erythropolis B7g [LQWU]
306764
306689
-
Arg
CCT
[ENA]
¡û
>W1910792735
MRCL01000009
Actinomycetota
Rhodococcus erythropolis ACN1 [MRCL]
150131
150204
+
Arg
CCT
[ENA]
¡û
>W1910910534
NHBD01000006
Actinomycetota
Rhodococcus erythropolis AV96 [NHBD]
280519
280444
-
Arg
CCT
[ENA]
¡û
>W1911136551
NOVD01000025
Actinomycetota
Rhodococcus qingshengii 23b-28 [NOVD]
18344
18419
+
Arg
CCT
[ENA]
¡û
>W1911155416
NPJZ01000001
Actinomycetota
Rhodococcus sp. OK302 [NPJZ]
2147629
2147556
-
Arg
CCT
[ENA]
¡û
>W1911239694
NSDY01000002
Actinomycetota
Rhodococcus sp. ACPA4 [NSDY]
830440
830367
-
Arg
CCT
[ENA]
¡û
>W1911647285
QAJJ01000009
Actinomycetota
Rhodococcus sp. KBW08 [QAJJ]
149728
149803
+
Arg
CCT
[ENA]
¡û
>W1810402542
PYHL01000003
Actinomycetota
Rhodococcus sp. AD45-ID [PYHL]
776307
776234
-
Arg
CCT
[ENA]
¡û
>W1810577239
QEOC01000001
Actinomycetota
Rhodococcus globerulus WS3306 [QEOC]
5001697
5001770
+
Arg
CCT
[ENA]
¡û
>W1810582401
QEUH01000004
Actinomycetota
Rhodococcus sp. AQ5-07 [QEUH]
467197
467272
+
Arg
CCT
[ENA]
¡û
>W1810870053
QUAI01000001
Actinomycetota
Rhodococcus erythropolis ATCC 15903 [QUAI]
6243692
6243617
-
Arg
CCT
[ENA]
¡û
>W1810885245
QUNE01000002
Actinomycetota
Rhodococcus sp. OK551 [QUNE]
348881
348954
+
Arg
CCT
[ENA]
¡û
>C151079133
CP011295
Actinomycetota
Rhodococcus erythropolis BG43 [CP011295]
4693724
4693799
+
Arg
CCT
[Ensembl]
¡û
>W1510091155
CEDU01000021
Actinomycetota
Rhodococcus globerulus 4J2A2 [CEDU]
738384
738311
-
Arg
CCT
[ENA]
¡û
>W1510115768
CFHW01000004
Actinomycetota
Rhodococcus sp. 311R [CFHW]
35416
35491
+
Arg
CCT
[ENA]
¡û
>W1511480876
JWJL01000392
Actinomycetota
Rhodococcus erythropolis S-43 [JWJL]
8355
8430
+
Arg
CCT
[ENA]
¡û
>W1511518912
JXYP01000030
Actinomycetota
Williamsia herbipolensis ARP1 [JXYP]
121130
121057
-
Arg
CCT
[ENA]
¡û
>W1511535437
JYOP01000003
Actinomycetota
Rhodococcus sp. AD45 [JYOP]
776200
776127
-
Arg
CCT
[ENA]
¡û
>W1511639817
LDPN01000106
Actinomycetota
Rhodococcus erythropolis CAS922i [LDPN]
191127
191202
+
Arg
CCT
[ENA]
¡û
>W1511656599
LEKE01000108
Actinomycetota
Rhodococcus sp. ARP2 [LEKE]
12454
12529
+
Arg
CCT
[ENA]
¡û
>W11177952
AGCF01000001
Actinomycetota
Rhodococcus erythropolis XP [AGCF]
728226
728301
+
Arg
CCT
[ENA]
¡û
>C161005737
CP007255
Actinomycetota
Rhodococcus erythropolis R138 [CP007255]
2243600
2243525
-
Arg
CCT
[Ensembl]
¡û
>C161045369
CP012749
Actinomycetota
Rhodococcus sp. 008 [CP012749]
594149
594224
+
Arg
CCT
[Ensembl]
¡û
>W1610045450
BBBO01000055
Actinomycetota
Rhodococcus baikonurensis JCM 18801 [BBBO]
8218
8143
-
Arg
CCT
[ENA]
¡û
>W1610048833
BBEL01000019
Actinomycetota
Rhodococcus erythropolis JCM 9805 [BBEL]
62504
62579
+
Arg
CCT
[ENA]
¡û
>W1610050453
BBFW01000057
Actinomycetota
Rhodococcus qingshengii JCM 15477 [BBFW]
22507
22582
+
Arg
CCT
[ENA]
¡û
>W1610068615
BCRM01000001
Actinomycetota
Rhodococcus erythropolis NBRC 15567 [BCRM]
1286471
1286396
-
Arg
CCT
[ENA]
¡û
>W1610073960
BCWH01000002
Actinomycetota
Rhodococcus sp. YH3-3 [BCWH]
1367661
1367586
-
Arg
CCT
[ENA]
¡û
>W1610515489
FMBB01000001
Actinomycetota
Rhodococcus qingshengii enclensis [FMBB]
360223
360298
+
Arg
CCT
[ENA]
¡û
>W1610650029
LJIS01000129
Actinomycetota
Rhodococcus sp. ADH [LJIS]
350328
350403
+
Arg
CCT
[ENA]
¡û
>W1610739054
LMPL01000004
Actinomycetota
Williamsia sp. Leaf354 [LMPL]
533791
533718
-
Arg
CCT
[ENA]
¡û
>W1610749627
LNAK01000043
Actinomycetota
Rhodococcus sp. KB6 [LNAK]
724350
724275
-
Arg
CCT
[ENA]
¡û
>W1610759646
LNIU01000007
Actinomycetota
Prescottella equi [LNIU]
519301
519226
-
Arg
CCT
[ENA]
¡û
>W1610767496
LNQH01000002
Actinomycetota
Rhodococcus qingshengii enclensis [LNQH]
117195
117270
+
Arg
CCT
[ENA]
¡û
>W1610849563
LPZM01000049
Actinomycetota
Rhodococcus sp. AJR001 [LPZM]
87099
87174
+
Arg
CCT
[ENA]
¡û
>W1610891354
LRRJ01000015
Actinomycetota
Rhodococcus qingshengii [LRRJ]
235954
235879
-
Arg
CCT
[ENA]
¡û
>W1610949382
LVCT01000040
Actinomycetota
Rhodococcus sp. EPR-134 [LVCT]
7166
7091
-
Arg
CCT
[ENA]
¡û
>W1610978055
LVXC01000002
Actinomycetota
Rhodococcus qingshengii [LVXC]
2181516
2181441
-
Arg
CCT
[ENA]
¡û
>W1611023772
LYXB01000001
Actinomycetota
Rhodococcus qingshengii [LYXB]
276858
276931
+
Arg
CCT
[ENA]
¡û
>W1710042291
BBBO01000055
Actinomycetota
Rhodococcus baikonurensis JCM 18801 [BBBO]
8218
8143
-
Arg
CCT
[ENA]
¡û
>W1710045305
BBEL01000019
Actinomycetota
Rhodococcus erythropolis JCM 9805 [BBEL]
62504
62579
+
Arg
CCT
[ENA]
¡û
>W1710046852
BBFW01000057
Actinomycetota
Rhodococcus qingshengii JCM 15477 [BBFW]
22507
22582
+
Arg
CCT
[ENA]
¡û
>W1710065988
BCRM01000001
Actinomycetota
Rhodococcus erythropolis NBRC 15567 [BCRM]
1286471
1286396
-
Arg
CCT
[ENA]
¡û
>W1710071078
BCWH01000002
Actinomycetota
Rhodococcus sp. YH3-3 [BCWH]
1367661
1367586
-
Arg
CCT
[ENA]
¡û
>W1710071851
BCWX01000003
Actinomycetota
Rhodococcus globerulus NBRC 14531 [BCWX]
635212
635139
-
Arg
CCT
[ENA]
¡û
>W1710501179
FMBB01000001
Actinomycetota
Rhodococcus qingshengii enclensis [FMBB]
360223
360298
+
Arg
CCT
[ENA]
¡û
>W1710507169
FMVB01000001
Actinomycetota
Rhodococcus erythropolis 164Chir2E [FMVB]
260216
260141
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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