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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237376 (110 seq.)
>W1710818406
LKPF01000077
Bacillota
Enterococcus durans faecium [LKPF]
5519
5595
+
Met
CAT
[ENA]
¡û
>W131018058
AITR01000015
Bacillota
Enterococcus faecium HF50104 [AITR]
57909
57984
+
Met
CAT
[ENA]
¡û
>W131209535
ATIW01000066
Bacillota
Enterococcus faecium OC2A-1 [ATIW]
315
240
-
Met
CAT
[ENA]
¡û
>W1712067497
NGLA01000001
Bacillota
Enterococcus faecium [NGLA]
1132322
1132395
+
Met
CAT
[ENA]
¡û
>W1712067605
NGLB01000003
Bacillota
Enterococcus faecium [NGLB]
57477
57402
-
Met
CAT
[ENA]
¡û
>W1712068386
NGLQ01000001
Bacillota
Enterococcus faecium [NGLQ]
890589
890516
-
Met
CAT
[ENA]
¡û
>W1712068439
NGLR01000001
Bacillota
Enterococcus faecium [NGLR]
1016399
1016474
+
Met
CAT
[ENA]
¡û
>W1712068523
NGLS01000001
Bacillota
Enterococcus faecium [NGLS]
2279438
2279365
-
Met
CAT
[ENA]
¡û
>W131008490
AHWZ01000021
Bacillota
Enterococcus faecium E1575 [AHWZ]
84786
84713
-
Met
CAT
[ENA]
¡û
>W131010851
AHYU01000003
Bacillota
Enterococcus durans ATCC 6056 [AHYU]
44809
44882
+
Met
CAT
[ENA]
¡û
>W131010852
AHYU01000010
Bacillota
Enterococcus durans ATCC 6056 [AHYU]
5629
5705
+
Met
CAT
[ENA]
¡û
>W131017477
AITE01000011
Bacillota
Enterococcus faecium 9830512-2 [AITE]
49791
49864
+
Met
CAT
[ENA]
¡û
>W131019748
AIUZ01000020
Bacillota
Enterococcus faecium VAN 335 [AIUZ]
60448
60521
+
Met
CAT
[ENA]
¡û
>W131027097
AJAD01000011
Bacillota
Enterococcus faecium UAA1280 [AJAD]
205042
205115
+
Met
CAT
[ENA]
¡û
>W131031982
AJDQ01000006
Bacillota
Enterococcus gilvus ATCC BAA-350 [AJDQ]
600246
600319
+
Met
CAT
[ENA]
¡û
>W131098857
AOSM01000055
Bacillota
Enterococcus durans IPLA 655 [AOSM]
8391
8315
-
Met
CAT
[ENA]
¡û
>W131190136
ASEC01000004
Bacillota
Enterococcus faecium VAN 327 [ASEC]
566343
566270
-
Met
CAT
[ENA]
¡û
>W131201805
ASWH01000001
Bacillota
Enterococcus gilvus ATCC BAA-350 [ASWH]
2385302
2385229
-
Met
CAT
[ENA]
¡û
>WENV180144070
OATZ01000178
[OATZ] human gut metagenome; faeces
221
294
+
Ile2
CAT
[ENA]
¢þ
>WENV180144080
OATZ01000215
[OATZ] human gut metagenome; faeces
294
221
-
Ile2
CAT
[ENA]
¢þ
>WENV180457368
OBXU01000129
[OBXU] human gut metagenome; faeces
37096
37169
+
Ile2
CAT
[ENA]
¢þ
>WENV180468233
OBYJ01001342
[OBYJ] human gut metagenome; faeces
6570
6643
+
Ile2
CAT
[ENA]
¢þ
>WENV181491023
OGFX01000321
[OGFX] metagenome; Human gut stool
20037
20110
+
Ile2
CAT
[ENA]
¢þ
>WENV181507134
OGGO01000757
[OGGO] metagenome; Human gut stool
5243
5170
-
Ile2
CAT
[ENA]
¢þ
>WENV181945752
OGZC01000077
[OGZC] human gut metagenome; faeces
116
191
+
Ile2
CAT
[ENA]
¢þ
>WENV182617476
OJKD01013584
[OJKD] metagenome; faeces
450
377
-
Ile2
CAT
[ENA]
¢þ
>W141274188
JAAK01000061
Bacillota
Enterococcus faecium VRE0576 [JAAK]
15280
15207
-
Met
CAT
[ENA]
¡û
>WENV170560164
CYGL01000159
[CYGL] human gut metagenome;
15652
15725
+
Met
CAT
[ENA]
¢þ
>C181054336
CP021849
Bacillota
Enterococcus faecium 16-346 [CP021849]
826809
826736
-
Met
CAT
-
¡û
>C181074187
CP022930
Bacillota
Enterococcus durans BDGP3 [CP022930]
2586766
2586693
-
Met
CAT
-
¡û
>C191061909
CP028727
Bacillota
Enterococcus faecium FSIS1608820 [CP028727]
1466778
1466851
+
Met
CAT
-
¡û
>C191061972
CP028727
Bacillota
Enterococcus faecium FSIS1608820 [CP028727]
5622
5549
-
Met
CAT
-
¡û
>C191062468
CP028928
Bacillota
Lactobacillus sp. Koumiss [CP028928]
502129
502202
+
Met
CAT
-
¡û
>C191062475
CP028928
Bacillota
Lactobacillus sp. Koumiss [CP028928]
1345123
1345196
+
Met
CAT
-
¡û
>C191216238
LR135317
Bacillota
Enterococcus faecium [LR135317]
2175024
2174951
-
Met
CAT
-
¡û
>C191216310
LR135324
Bacillota
Enterococcus faecium [LR135324]
2214528
2214455
-
Met
CAT
-
¡û
>W1910284380
FREN01000059
Bacillota
Enterococcus faecium [FREN]
2368
2295
-
Met
CAT
[ENA]
¡û
>W1910312181
FRXT01000008
Bacillota
Enterococcus faecium [FRXT]
44306
44379
+
Met
CAT
[ENA]
¡û
>W1910312215
FRXT01000042
Bacillota
Enterococcus faecium [FRXT]
3073
3146
+
Met
CAT
[ENA]
¡û
>W1910312221
FRXT01000052
Bacillota
Enterococcus faecium [FRXT]
1041
1114
+
Met
CAT
[ENA]
¡û
>W1910312556
FRXX01000038
Bacillota
Enterococcus faecium [FRXX]
10872
10799
-
Met
CAT
[ENA]
¡û
>W1910312746
FRYA01000049
Bacillota
Enterococcus faecium [FRYA]
10789
10716
-
Met
CAT
[ENA]
¡û
>W1910312943
FRYD01000042
Bacillota
Enterococcus faecium [FRYD]
4103
4176
+
Met
CAT
[ENA]
¡û
>W1910605674
LEPB01000004
Bacillota
Enterococcus durans 4EA1 [LEPB]
755431
755358
-
Met
CAT
[ENA]
¡û
>W1910606342
LEPN01000007
Bacillota
Enterococcus faecalis 263EA1 [LEPN]
144560
144633
+
Met
CAT
[ENA]
¡û
>W1910606766
LEPU01000009
Bacillota
Enterococcus faecalis 302EA1 [LEPU]
147276
147349
+
Met
CAT
[ENA]
¡û
>W1910607832
LEQN01000025
Bacillota
Enterococcus faecium 163EA1 [LEQN]
20769
20694
-
Met
CAT
[ENA]
¡û
>W1910607868
LEQO01000007
Bacillota
Enterococcus faecium 173EA1 [LEQO]
300733
300809
+
Met
CAT
[ENA]
¡û
>W1910608209
LEQT01000017
Bacillota
Enterococcus faecium 235EA1 [LEQT]
47740
47816
+
Met
CAT
[ENA]
¡û
>W1910608236
LEQU01000007
Bacillota
Enterococcus faecium 242EA1 [LEQU]
167134
167061
-
Met
CAT
[ENA]
¡û
>W1910608570
LERB01000003
Bacillota
Enterococcus faecium 283EA1 [LERB]
20303
20230
-
Met
CAT
[ENA]
¡û
>W1910608802
LERF01000011
Bacillota
Enterococcus faecium 300BEA1 [LERF]
46852
46927
+
Met
CAT
[ENA]
¡û
>W1910608854
LERG01000007
Bacillota
Enterococcus faecium 306EA1 [LERG]
20764
20689
-
Met
CAT
[ENA]
¡û
>W1910608977
LERJ01000013
Bacillota
Enterococcus faecium 319EA1 [LERJ]
73603
73676
+
Met
CAT
[ENA]
¡û
>W1910608978
LERJ01000014
Bacillota
Enterococcus faecium 319EA1 [LERJ]
4372
4445
+
Met
CAT
[ENA]
¡û
>W1910609110
LERM01000002
Bacillota
Enterococcus faecium 55EA1 [LERM]
619795
619868
+
Met
CAT
[ENA]
¡û
>W1910609316
LERP01000011
Bacillota
Enterococcus faecium 67EA1 [LERP]
22350
22274
-
Met
CAT
[ENA]
¡û
>W1910870769
NCVP01000003
Bacillota
Enterococcus durans 18S [NCVP]
17809
17736
-
Met
CAT
[ENA]
¡û
>W1910998266
NLCT01000116
Bacillota
Enterococcus faecium VRE2016-194 [NLCT]
180
253
+
Met
CAT
[ENA]
¡û
>W1911239048
NSDE01000065
Bacillota
Enterococcus faecium 615 [NSDE]
55919
55843
-
Met
CAT
[ENA]
¡û
>W1911573417
PDEB01000004
Bacillota
Enterococcus durans FDAARGOS_396 [PDEB]
1483736
1483663
-
Met
CAT
[ENA]
¡û
>W1911573419
PDEB01000004
Bacillota
Enterococcus durans FDAARGOS_396 [PDEB]
1200607
1200534
-
Met
CAT
[ENA]
¡û
>W1911578732
PEID01000028
Bacillota
Enterococcus faecium 8S3 [PEID]
1955
1882
-
Met
CAT
[ENA]
¡û
>W1911581413
PGCS01000093
Bacillota
Enterococcus faecium A108R2B0 [PGCS]
1323
1250
-
Met
CAT
[ENA]
¡û
>W1911589128
PJWC01000030
Bacillota
Enterococcus faecium EN196 [PJWC]
27336
27261
-
Met
CAT
[ENA]
¡û
>W1911589680
PJWM01000001
Bacillota
Enterococcus faecalis EN836 [PJWM]
25647
25720
+
Met
CAT
[ENA]
¡û
>W1911589767
PJWN01000005
Bacillota
Enterococcus faecalis EN810 [PJWN]
217334
217261
-
Met
CAT
[ENA]
¡û
>W1911589829
PJWO01000019
Bacillota
Enterococcus faecalis EN782 [PJWO]
1820
1747
-
Met
CAT
[ENA]
¡û
>W1911713911
QPVH01000007
Bacillota
Enterococcus faecium TV41 [QPVH]
10967
11042
+
Met
CAT
[ENA]
¡û
>W1810047406
PCFW01000038
Bacillota
Enterococcus faecium Hp_23-14 [PCFW]
2528
2601
+
Met
CAT
[ENA]
¡û
>W1810047789
PCGC01000063
Bacillota
Enterococcus faecium Hp_5-7 [PCGC]
2732
2805
+
Met
CAT
[ENA]
¡û
>W1810113995
PHLD01000001
Bacillota
Enterococcus faecium 16-164-1 [PHLD]
1758234
1758307
+
Met
CAT
[ENA]
¡û
>W1810114144
PHLF01000001
Bacillota
Enterococcus faecalis 16-372 [PHLF]
1298245
1298172
-
Met
CAT
[ENA]
¡û
>W1810310327
PTTS01000210
Bacillota
Enterococcus faecium CVM N60357F [PTTS]
4271
4347
+
Met
CAT
[ENA]
¡û
>W1810310742
PTUA01000050
Bacillota
Enterococcus faecium CVM N60252F [PTUA]
46106
46182
+
Met
CAT
[ENA]
¡û
>W1810311569
PTUQ01000094
Bacillota
Enterococcus faecium CVM N59754F [PTUQ]
981
1054
+
Met
CAT
[ENA]
¡û
>W1810312175
PTVC01000002
Bacillota
Enterococcus faecium CVM N59951F [PTVC]
47949
48024
+
Met
CAT
[ENA]
¡û
>W1810312178
PTVC01000013
Bacillota
Enterococcus faecium CVM N59951F [PTVC]
94879
94952
+
Met
CAT
[ENA]
¡û
>W1810314058
PTWL01000002
Bacillota
Enterococcus durans CVM N59549F [PTWL]
8716
8789
+
Met
CAT
[ENA]
¡û
>W1810316090
PTXZ01000152
Bacillota
Enterococcus faecium CVM N52732 [PTXZ]
6808
6881
+
Met
CAT
[ENA]
¡û
>W1810316094
PTXZ01000188
Bacillota
Enterococcus faecium CVM N52732 [PTXZ]
3140
3067
-
Met
CAT
[ENA]
¡û
>W1810316264
PTYD01000109
Bacillota
Enterococcus faecium CVM N52769 [PTYD]
2080
2007
-
Met
CAT
[ENA]
¡û
>W1810317707
PTZE01000001
Bacillota
Enterococcus faecium CVM N54035 [PTZE]
68922
68995
+
Met
CAT
[ENA]
¡û
>W1810317895
PTZH01000101
Bacillota
Enterococcus faecium CVM N54107 [PTZH]
19
94
+
Met
CAT
[ENA]
¡û
>W1810318317
PTZP01000005
Bacillota
Enterococcus faecium CVM N54519 [PTZP]
2521
2594
+
Met
CAT
[ENA]
¡û
>W1810318822
PTZY01000153
Bacillota
Enterococcus faecium CVM N54567 [PTZY]
3670
3746
+
Met
CAT
[ENA]
¡û
>W1810319274
PUAG01000084
Bacillota
Enterococcus faecium CVM N55072 [PUAG]
2522
2447
-
Met
CAT
[ENA]
¡û
>W1810319937
PUAT01000143
Bacillota
Enterococcus faecium CVM N55290 [PUAT]
1682
1755
+
Met
CAT
[ENA]
¡û
>W1810319972
PUAU01000022
Bacillota
Enterococcus faecium CVM N55299 [PUAU]
42646
42570
-
Met
CAT
[ENA]
¡û
>W1810320195
PUAY01000018
Bacillota
Enterococcus faecium CVM N55655 [PUAY]
45337
45410
+
Met
CAT
[ENA]
¡û
>W1810320566
PUBF01000033
Bacillota
Enterococcus faecium CVM N52702 [PUBF]
29418
29343
-
Met
CAT
[ENA]
¡û
>W1810320854
PUBJ01000162
Bacillota
Enterococcus faecium CVM N52649 [PUBJ]
2406
2331
-
Met
CAT
[ENA]
¡û
>W1810320989
PUBM01000076
Bacillota
Enterococcus faecium CVM N52629 [PUBM]
22189
22116
-
Met
CAT
[ENA]
¡û
>W1810814788
QSAN01000119
Bacillota
Enterococcus durans AF11-32-H [QSAN]
2408
2335
-
Met
CAT
[ENA]
¡û
>C151094334
CP012366
Bacillota
Enterococcus durans KLDS6.0933 [CP012366]
67715
67642
-
Met
CAT
-
¡û
>C151094648
CP012384
Bacillota
Enterococcus durans KLDS 6.0930 [CP012384]
1863144
1863071
-
Met
CAT
-
¡û
>W10100377
ABQI01000045
Bacillota
Enterococcus faecium E1071 [ABQI]
49998
49923
-
Met
CAT
[ENA]
¡û
>W10102167
ACOS01000076
Bacillota
Enterococcus faecium E1039 [ACOS]
2181
2108
-
Met
CAT
[ENA]
¡û
>W10125779
AECH01000054
Bacillota
Enterococcus faecium TX0133A [AECH]
180
107
-
Met
CAT
[ENA]
¡û
>W10125799
AECH01000180
Bacillota
Enterococcus faecium TX0133A [AECH]
477
404
-
Met
CAT
[ENA]
¡û
>W11100377
ABQI01000045
Bacillota
Enterococcus faecium E1071 [ABQI]
49998
49923
-
Met
CAT
[ENA]
¡û
>W11102323
ACOS01000076
Bacillota
Enterococcus faecium E1039 [ACOS]
2181
2108
-
Met
CAT
[ENA]
¡û
>W1511356430
JRUG01000018
Bacillota
Enterococcus faecium 70-36-8 [JRUG]
66156
66231
+
Met
CAT
[ENA]
¡û
>W1511430234
JUEJ01000031
Bacillota
Enterococcus faecium 70-40-11 [JUEJ]
491
416
-
Met
CAT
[ENA]
¡û
>W1511469647
JVVS01000013
Bacillota
Enterococcus faecalis 128_EFLS [JVVS]
11856
11783
-
Met
CAT
[ENA]
¡û
>W11132666
AECH01000054
Bacillota
Enterococcus faecium TX0133A [AECH]
180
107
-
Met
CAT
[ENA]
¡û
>W11132686
AECH01000180
Bacillota
Enterococcus faecium TX0133A [AECH]
477
404
-
Met
CAT
[ENA]
¡û
>W1610066796
BCQB01000065
Bacillota
Enterococcus durans NBRC 100479 [BCQB]
8323
8247
-
Met
CAT
[ENA]
¡û
>W1610682813
LKPF01000077
Bacillota
Enterococcus durans faecium [LKPF]
5519
5595
+
Met
CAT
[ENA]
¡û
>W1710064227
BCQB01000065
Bacillota
Enterococcus durans NBRC 100479 [BCQB]
8323
8247
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK