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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237387 (81 seq.)
>WENV180123135
OASV01026416
[OASV] human gut metagenome; faeces
66
141
+
Thr
TGT
[ENA]
¢þ
>WENV180140260
OATT01023173
[OATT] human gut metagenome; faeces
311
236
-
Thr
TGT
[ENA]
¢þ
>WENV180140281
OATT01028163
[OATT] human gut metagenome; faeces
368
293
-
Thr
TGT
[ENA]
¢þ
>WENV180162554
OAVG01023237
[OAVG] human gut metagenome; faeces
56
131
+
Thr
TGT
[ENA]
¢þ
>WENV180243700
OBDJ01066571
[OBDJ] human gut metagenome; human gut
299
224
-
Thr
TGT
[ENA]
¢þ
>WENV180276260
OBHU01008834
[OBHU] human gut metagenome; feces
1851
1926
+
Thr
TGT
[ENA]
¢þ
>WENV180290529
OBIU01033874
[OBIU] human gut metagenome; human gut
382
307
-
Thr
TGT
[ENA]
¢þ
>WENV180316346
OBKI01015835
[OBKI] human gut metagenome; human gut
326
401
+
Thr
TGT
[ENA]
¢þ
>WENV180495245
OCAA01020109
[OCAA] human gut metagenome; faeces
520
445
-
Thr
TGT
[ENA]
¢þ
>WENV180608466
OCPU01054358
[OCPU] human gut metagenome; human gut
30
105
+
Thr
TGT
[ENA]
¢þ
>WENV180647186
OCSH01042952
[OCSH] human gut metagenome; human gut
590
515
-
Thr
TGT
[ENA]
¢þ
>WENV180867801
ODLK01016230
[ODLK] human metagenome; G_DNA_Stool
968
1043
+
Thr
TGT
[ENA]
¢þ
>WENV180966239
ODUP01134637
[ODUP] human metagenome; G_DNA_Stool
268
193
-
Thr
TGT
[ENA]
¢þ
>WENV181104308
OEDH01028456
[OEDH] human gut metagenome; human gut
113
188
+
Thr
TGT
[ENA]
¢þ
>WENV181275760
OFGJ01047808
[OFGJ] mouse gut metagenome; faeces
8
83
+
Thr
TGT
[ENA]
¢þ
>WENV181276832
OFGK01060370
[OFGK] mouse gut metagenome; faeces
116
191
+
Thr
TGT
[ENA]
¢þ
>WENV181280090
OFGN01031677
[OFGN] mouse gut metagenome; faeces
621
546
-
Thr
TGT
[ENA]
¢þ
>WENV181289126
OFGZ01009199
[OFGZ] mouse gut metagenome; faeces
864
789
-
Thr
TGT
[ENA]
¢þ
>WENV181426924
OGCQ01019266
[OGCQ] human gut metagenome; human gut
326
401
+
Thr
TGT
[ENA]
¢þ
>WENV181470802
OGEU01018891
[OGEU] metagenome; Human gut stool
1425
1350
-
Thr
TGT
[ENA]
¢þ
>WENV181478103
OGFF01014103
[OGFF] metagenome; Human gut stool
247
322
+
Thr
TGT
[ENA]
¢þ
>WENV181551482
OGIN01021288
[OGIN] metagenome; Human gut stool
173
248
+
Thr
TGT
[ENA]
¢þ
>WENV181623169
OGMH01005003
[OGMH] metagenome; Human gut stool
1325
1250
-
Thr
TGT
[ENA]
¢þ
>WENV181642927
OGNH01000898
[OGNH] metagenome; Human gut stool
3713
3788
+
Thr
TGT
[ENA]
¢þ
>WENV181746781
OGQN01004156
[OGQN] human gut metagenome; faeces
1091
1016
-
Thr
TGT
[ENA]
¢þ
>WENV181761638
OGQW01004121
[OGQW] human gut metagenome; faeces
5813
5738
-
Thr
TGT
[ENA]
¢þ
>WENV181789929
OGRO01061151
[OGRO] human gut metagenome; faeces
696
621
-
Thr
TGT
[ENA]
¢þ
>WENV181821114
OGUD01029782
[OGUD] metagenome; Human gut stool
237
162
-
Thr
TGT
[ENA]
¢þ
>WENV182498368
OITN01012251
[OITN] human gut metagenome; human gut
312
387
+
Thr
TGT
[ENA]
¢þ
>WENV182500524
OITY01017843
[OITY] human gut metagenome; human gut
712
637
-
Thr
TGT
[ENA]
¢þ
>WENV182516246
OIWN01024211
[OIWN] human gut metagenome; faeces
1146
1071
-
Thr
TGT
[ENA]
¢þ
>WENV182706510
OJOW01012214
[OJOW] human gut metagenome; stool sample
46
121
+
Thr
TGT
[ENA]
¢þ
>WENV182758769
OJRI01020734
[OJRI] human gut metagenome; stool sample
294
369
+
Thr
TGT
[ENA]
¢þ
>WENV182879787
OKRZ01030701
[OKRZ] human gut metagenome; faeces
771
846
+
Thr
TGT
[ENA]
¢þ
>WENV182958749
OKWH01049959
[OKWH] human gut metagenome; human gut
115
40
-
Thr
TGT
[ENA]
¢þ
>WENV182964965
OKWR01016461
[OKWR] human gut metagenome; human gut
1186
1111
-
Thr
TGT
[ENA]
¢þ
>WENV183094486
OLNC01020195
[OLNC] human gut metagenome; faeces
600
525
-
Thr
TGT
[ENA]
¢þ
>WENV183098097
OLNE01034165
[OLNE] human gut metagenome; faeces
519
444
-
Thr
TGT
[ENA]
¢þ
>WENV183113884
OLNP01051467
[OLNP] human gut metagenome; faeces
757
832
+
Thr
TGT
[ENA]
¢þ
>WENV183131301
OLOA01026877
[OLOA] human gut metagenome; faeces
332
257
-
Thr
TGT
[ENA]
¢þ
>WENV183133042
OLOB01019541
[OLOB] human gut metagenome; faeces
1247
1322
+
Thr
TGT
[ENA]
¢þ
>WENV183145129
OLOL01037439
[OLOL] human gut metagenome; faeces
261
336
+
Thr
TGT
[ENA]
¢þ
>WENV183166087
OLOX01038147
[OLOX] human gut metagenome; faeces
653
578
-
Thr
TGT
[ENA]
¢þ
>WENV183228089
OLQQ01028175
[OLQQ] human gut metagenome; faeces
286
211
-
Thr
TGT
[ENA]
¢þ
>WENV183243306
OLRC01042089
[OLRC] human gut metagenome; faeces
35
110
+
Thr
TGT
[ENA]
¢þ
>WENV183313423
OLVP01047739
[OLVP] human gut metagenome; faeces
333
258
-
Thr
TGT
[ENA]
¢þ
>WENV183324719
OLVY01044022
[OLVY] human gut metagenome; feces
614
539
-
Thr
TGT
[ENA]
¢þ
>WENV183347558
OLWT01014428
[OLWT] human gut metagenome; feces
770
845
+
Thr
TGT
[ENA]
¢þ
>WENV183352505
OLWZ01032635
[OLWZ] human gut metagenome; feces
346
271
-
Thr
TGT
[ENA]
¢þ
>WENV183470290
OMEJ01013679
[OMEJ] human gut metagenome; feces
308
233
-
Thr
TGT
[ENA]
¢þ
>WENV183549695
OOAZ01007943
[OOAZ] human gut metagenome; human gut
2655
2580
-
Thr
TGT
[ENA]
¢þ
>WENV183569473
OOCB01055944
[OOCB] human gut metagenome; human gut
682
607
-
Thr
TGT
[ENA]
¢þ
>WENV183584651
OOCQ01073230
[OOCQ] human gut metagenome; human gut
373
298
-
Thr
TGT
[ENA]
¢þ
>WENV170690668
LFRM01355320
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
174
249
+
Thr
TGT
[ENA]
¢þ
>C161042948
CP012601
Bacillota
Bacillus sp. FJAT-22090 [CP012601]
1107
1182
+
Thr
TGT
[Ensembl]
¡û
>C161056056
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
1817897
1817972
+
Thr
TGT
[Ensembl]
¡û
>C161056061
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
1818499
1818574
+
Thr
TGT
[Ensembl]
¡û
>C161056083
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
953168
953093
-
Thr
TGT
[Ensembl]
¡û
>C161056131
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
485551
485476
-
Thr
TGT
[Ensembl]
¡û
>C161056137
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
483942
483867
-
Thr
TGT
[Ensembl]
¡û
>C161056151
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
482536
482461
-
Thr
TGT
[Ensembl]
¡û
>C161056159
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
481694
481619
-
Thr
TGT
[Ensembl]
¡û
>C161056164
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
474658
474583
-
Thr
TGT
[Ensembl]
¡û
>W1610099810
CYYS01000040
Bacillota
Turicibacter sanguinis [CYYS]
6875
6950
+
Thr
TGT
[ENA]
¡û
>W1610099834
CYYS01000076
Bacillota
Turicibacter sanguinis [CYYS]
425
350
-
Thr
TGT
[ENA]
¡û
>W1610099846
CYYS01000077
Bacillota
Turicibacter sanguinis [CYYS]
989
1064
+
Thr
TGT
[ENA]
¡û
>W1610099853
CYYS01000077
Bacillota
Turicibacter sanguinis [CYYS]
1629
1704
+
Thr
TGT
[ENA]
¡û
>W1610099862
CYYS01000086
Bacillota
Turicibacter sanguinis [CYYS]
254
179
-
Thr
TGT
[ENA]
¡û
>W1610101334
CYZQ01000049
Bacillota
Turicibacter sanguinis [CYZQ]
536
611
+
Thr
TGT
[ENA]
¡û
>W1610101345
CYZQ01000053
Bacillota
Turicibacter sanguinis [CYZQ]
256
181
-
Thr
TGT
[ENA]
¡û
>W1610104193
CZBN01000102
Bacillota
Turicibacter sanguinis [CZBN]
2
77
+
Thr
TGT
[ENA]
¡û
>W1610104202
CZBN01000131
Bacillota
Turicibacter sanguinis [CZBN]
77
2
-
Thr
TGT
[ENA]
¡û
>W1710102565
CYYS01000040
Bacillota
Turicibacter sanguinis [CYYS]
6875
6950
+
Thr
TGT
[ENA]
¡û
>W1710102589
CYYS01000076
Bacillota
Turicibacter sanguinis [CYYS]
425
350
-
Thr
TGT
[ENA]
¡û
>W1710102601
CYYS01000077
Bacillota
Turicibacter sanguinis [CYYS]
989
1064
+
Thr
TGT
[ENA]
¡û
>W1710102608
CYYS01000077
Bacillota
Turicibacter sanguinis [CYYS]
1629
1704
+
Thr
TGT
[ENA]
¡û
>W1710102617
CYYS01000086
Bacillota
Turicibacter sanguinis [CYYS]
254
179
-
Thr
TGT
[ENA]
¡û
>W1710104089
CYZQ01000049
Bacillota
Turicibacter sanguinis [CYZQ]
536
611
+
Thr
TGT
[ENA]
¡û
>W1710104100
CYZQ01000053
Bacillota
Turicibacter sanguinis [CYZQ]
256
181
-
Thr
TGT
[ENA]
¡û
>W1710106897
CZBN01000102
Bacillota
Turicibacter sanguinis [CZBN]
2
77
+
Thr
TGT
[ENA]
¡û
>W1710106906
CZBN01000131
Bacillota
Turicibacter sanguinis [CZBN]
77
2
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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