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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237388 (122 seq.)
>W1710786387
LJIX01000006
Bacillota
Cytobacillus solani FJAT-18043 [LJIX]
810149
810224
+
His
GTG
[ENA]
¡û
>W1710859105
LMBX01000004
Bacillota
Cytobacillus praedii FJAT-25547 [LMBX]
1256
1331
+
His
GTG
[ENA]
¡û
>W1710859214
LMBY01000031
Bacillota
Cytobacillus dafuensis FJAT-25496 [LMBY]
956
1030
+
His
GTG
[ENA]
¡û
>W1710859215
LMBY01000031
Bacillota
Cytobacillus dafuensis FJAT-25496 [LMBY]
1060
1134
+
His
GTG
[ENA]
¡û
>W1711066691
LSDB01000052
Bacillota
Gemella asaccharolytica [LSDB]
70821
70746
-
His
GTG
[ENA]
¡û
>W1711119750
LUFJ01000012
Bacillota
[Bacillus] sp. KCTC 13219 KCTC 13219 [LUFJ]
385844
385769
-
His
GTG
[ENA]
¡û
>W1711129988
LUUN01000001
Bacillota
Cytobacillus horneckiae [LUUN]
171039
171114
+
His
GTG
[ENA]
¡û
>W1711130055
LUUN01000004
Bacillota
Cytobacillus horneckiae [LUUN]
255887
255962
+
His
GTG
[ENA]
¡û
>W1711170014
LWAC01000069
Bacillota
Staphylococcus cohnii [LWAC]
2185
2258
+
His
GTG
[ENA]
¡û
>W1711356949
MDGU01000042
Bacillota
Lysinibacillus sp. AR18-8 [MDGU]
640
715
+
His
GTG
[ENA]
¡û
>W1711666998
MRDD01000124
Bacillota
Staphylococcus sp. MB371 [MRDD]
1309610
1309535
-
His
GTG
[ENA]
¡û
>C171095534
CP019573
Bacillota
Abyssicoccus albus S31 [CP019573]
1220528
1220455
-
His
GTG
-
¡û
>C171096341
CP019609
Bacillota
Vagococcus penaei CD276 [CP019609]
2044143
2044217
+
His
GTG
-
¡û
>C171096345
CP019609
Bacillota
Vagococcus penaei CD276 [CP019609]
2044516
2044589
+
His
GTG
-
¡û
>C171096351
CP019609
Bacillota
Vagococcus penaei CD276 [CP019609]
2045215
2045289
+
His
GTG
-
¡û
>C171115270
CP021058
Bacillota
Macrococcus caseolyticus IMD0819 [CP021058]
1810955
1810882
-
His
GTG
-
¡û
>C171115327
CP021059
Bacillota
Macrococcus canis KM 45013 [CP021059]
1839303
1839230
-
His
GTG
-
¡û
>C171115336
CP021059
Bacillota
Macrococcus canis KM 45013 [CP021059]
1789035
1788960
-
His
GTG
-
¡û
>W131251353
CAVL010000036
Bacillota
Bacillus massiliigorillae G2(2012b) [CAVL]
44844
44769
-
His
GTG
[ENA]
¡û
>W131251366
CAVL010000042
Bacillota
Bacillus massiliigorillae G2(2012b) [CAVL]
75790
75715
-
His
GTG
[ENA]
¡û
>W141007889
AGZD01000007
Bacillota
Facklamia hominis CCUG 36813 [AGZD]
263732
263658
-
His
GTG
[ENA]
¡û
>WENV180140262
OATT01023173
[OATT] human gut metagenome; faeces
141
66
-
His
GTG
[ENA]
¢þ
>WENV180867802
ODLK01016230
[ODLK] human metagenome; G_DNA_Stool
1049
1124
+
His
GTG
[ENA]
¢þ
>WENV180966241
ODUP01134637
[ODUP] human metagenome; G_DNA_Stool
98
23
-
His
GTG
[ENA]
¢þ
>WENV181072979
OEAN01083894
[OEAN] human metagenome; G_DNA_Stool
130
55
-
His
GTG
[ENA]
¢þ
>WENV181789880
OGRO01052130
[OGRO] human gut metagenome; faeces
1004
929
-
His
GTG
[ENA]
¢þ
>WENV182643694
OJLW01000565
[OJLW] metagenome; surface
944
1018
+
His
GTG
[ENA]
¢þ
>WENV182645354
OJLY01011614
[OJLY] metagenome; surface
180
254
+
His
GTG
[ENA]
¢þ
>WENV183103803
OLNJ01007944
[OLNJ] human gut metagenome; faeces
401
476
+
His
GTG
[ENA]
¢þ
>WENV183238266
OLQY01016200
[OLQY] human gut metagenome; faeces
141
216
+
His
GTG
[ENA]
¢þ
>WENV183511851
OMJG01006316
[OMJG] food metagenome; Cotija cheese
160
235
+
His
GTG
[ENA]
¢þ
>C181023908
CP017156
Bacillota
Macrococcus sp. IME1552 [CP017156]
160617
160690
+
His
GTG
-
¡û
>C191099084
CP033051
Bacillota
Rossellomorea marisflavi Bac144 [CP033051]
2382704
2382779
+
His
GTG
-
¡û
>C191099109
CP033051
Bacillota
Rossellomorea marisflavi Bac144 [CP033051]
3659849
3659774
-
His
GTG
-
¡û
>C191099137
CP033051
Bacillota
Rossellomorea marisflavi Bac144 [CP033051]
190461
190386
-
His
GTG
-
¡û
>C191138892
CP035309
Bacillota
Macrococcus canis KM0218 [CP035309]
1727470
1727397
-
His
GTG
-
¡û
>W1910224786
FMRW01000020
Bacillota
Mammaliicoccus lentus 050AP [FMRW]
5314
5239
-
His
GTG
[ENA]
¡û
>W1910231411
FPDX01000006
Bacillota
Bacillus massilionigeriensis Marseille-P2348 [FPDX]
685873
685799
-
His
GTG
[ENA]
¡û
>C09107392
AP009484
Bacillota
Macrococcus caseolyticus JCSC5402 [AP009484]
1717462
1717389
-
His
GTG
[Ensembl]
¡û
>W1910749391
MJBI02000006
Bacillota
Macrococcus goetzii CCM 4927 [MJBI]
71598
71525
-
His
GTG
[ENA]
¡û
>W1910749401
MJBI02000008
Bacillota
Macrococcus goetzii CCM 4927 [MJBI]
35811
35736
-
His
GTG
[ENA]
¡û
>W1910749445
MJBJ02000011
Bacillota
Macrococcus caseolyticus subsp. hominis CCM 7927 [MJBJ]
1080
1153
+
His
GTG
[ENA]
¡û
>W1910900001
NGKC01000025
Bacillota
Vagococcus acidifermentans LMG 24798 [NGKC]
8318
8245
-
His
GTG
[ENA]
¡û
>W1911138255
NOXE01000007
Bacillota
Priestia aryabhattai PHB10 [NOXE]
262551
262476
-
His
GTG
[ENA]
¡û
>W1911354414
NUYW01000029
Bacillota
Bacillus sp. AFS076308 [NUYW]
1325
1400
+
His
GTG
[ENA]
¡û
>W1911618164
PPRM01000104
Bacillota
Macrococcus caseolyticus DSM 20597 [PPRM]
77659
77586
-
His
GTG
[ENA]
¡û
>W1810151902
PIWJ01000014
Bacillota
Macrococcus caseolyticus 5190_42462 [PIWJ]
1829
1902
+
His
GTG
[ENA]
¡û
>W1810151963
PIWK01000020
Bacillota
Macrococcus caseolyticus 5193_2_23 [PIWK]
1829
1902
+
His
GTG
[ENA]
¡û
>W1810151999
PIWL01000015
Bacillota
Macrococcus caseolyticus 5194_2_25 [PIWL]
1860
1933
+
His
GTG
[ENA]
¡û
>W1810152072
PIWM01000019
Bacillota
Macrococcus caseolyticus 5196_2_38 [PIWM]
1829
1902
+
His
GTG
[ENA]
¡û
>W1810152129
PIWN01000018
Bacillota
Macrococcus caseolyticus 5197_42554 [PIWN]
26464
26391
-
His
GTG
[ENA]
¡û
>W1810152184
PIWO01000022
Bacillota
Macrococcus caseolyticus 5198_3_76 [PIWO]
1829
1902
+
His
GTG
[ENA]
¡û
>W1810152241
PIWP01000021
Bacillota
Macrococcus caseolyticus 5450_CC63A [PIWP]
1829
1902
+
His
GTG
[ENA]
¡û
>W1810152281
PIWQ01000006
Bacillota
Macrococcus caseolyticus 5452_CC83 [PIWQ]
1856
1929
+
His
GTG
[ENA]
¡û
>W1810152341
PIWR01000006
Bacillota
Macrococcus caseolyticus 5456_3_46 [PIWR]
1856
1929
+
His
GTG
[ENA]
¡û
>W1810152415
PIWS01000028
Bacillota
Macrococcus caseolyticus 5457_3_80 [PIWS]
1829
1902
+
His
GTG
[ENA]
¡û
>W1810152479
PIWT01000034
Bacillota
Macrococcus caseolyticus 5458_5_53 [PIWT]
1829
1902
+
His
GTG
[ENA]
¡û
>W1810152518
PIWU01000010
Bacillota
Macrococcus caseolyticus 5459_5_49 [PIWU]
1856
1929
+
His
GTG
[ENA]
¡û
>W1810152567
PIWV01000008
Bacillota
Macrococcus caseolyticus 5781_EF64 [PIWV]
70664
70591
-
His
GTG
[ENA]
¡û
>W1810152626
PIWW01000010
Bacillota
Macrococcus caseolyticus 5782_EF 83 [PIWW]
1136
1209
+
His
GTG
[ENA]
¡û
>W1810152675
PIWX01000009
Bacillota
Macrococcus caseolyticus 5783_EF107 [PIWX]
70231
70158
-
His
GTG
[ENA]
¡û
>W1810152755
PIWY01000031
Bacillota
Macrococcus caseolyticus 5784_EF114 [PIWY]
1840
1913
+
His
GTG
[ENA]
¡û
>W1810152794
PIWZ01000006
Bacillota
Macrococcus caseolyticus 5785_EF123 [PIWZ]
116371
116298
-
His
GTG
[ENA]
¡û
>W1810152863
PIXA01000027
Bacillota
Macrococcus caseolyticus 5786_EF153 [PIXA]
1829
1902
+
His
GTG
[ENA]
¡û
>W1810152895
PIXB01000018
Bacillota
Macrococcus caseolyticus 5787_EF169 [PIXB]
12251
12326
+
His
GTG
[ENA]
¡û
>W1810152918
PIXB01000019
Bacillota
Macrococcus caseolyticus 5787_EF169 [PIXB]
1829
1902
+
His
GTG
[ENA]
¡û
>W1810152975
PIXC01000022
Bacillota
Macrococcus caseolyticus 5788_EF188 [PIXC]
1829
1902
+
His
GTG
[ENA]
¡û
>W1810153038
PIXD01000039
Bacillota
Macrococcus caseolyticus 5789_EF199 [PIXD]
1840
1913
+
His
GTG
[ENA]
¡û
>W1810153097
PIXE01000029
Bacillota
Macrococcus caseolyticus 5794_EF323 [PIXE]
1829
1902
+
His
GTG
[ENA]
¡û
>W1810153146
PIXF01000019
Bacillota
Macrococcus caseolyticus 5795_EF335 [PIXF]
1829
1902
+
His
GTG
[ENA]
¡û
>W1810153184
PIXG01000008
Bacillota
Macrococcus caseolyticus 5798_EF375 [PIXG]
70665
70592
-
His
GTG
[ENA]
¡û
>W1810153260
PIXH01000018
Bacillota
Macrococcus caseolyticus 5799_EF381 [PIXH]
1829
1902
+
His
GTG
[ENA]
¡û
>W1810153318
PIXI01000018
Bacillota
Macrococcus caseolyticus 5800_EF393a [PIXI]
1829
1902
+
His
GTG
[ENA]
¡û
>W1810153360
PIXJ01000014
Bacillota
Macrococcus caseolyticus 5804_BC29 [PIXJ]
1860
1933
+
His
GTG
[ENA]
¡û
>W1810153421
PIXK01000005
Bacillota
Macrococcus caseolyticus 5812_BC73 [PIXK]
1830
1903
+
His
GTG
[ENA]
¡û
>W1810153472
PIXL01000008
Bacillota
Macrococcus caseolyticus 5813_BC74 [PIXL]
70217
70144
-
His
GTG
[ENA]
¡û
>W1810153535
PIXM01000005
Bacillota
Macrococcus caseolyticus 5814_BC75 [PIXM]
1830
1903
+
His
GTG
[ENA]
¡û
>W1810153606
PIXN01000029
Bacillota
Macrococcus caseolyticus 5815_BC85 [PIXN]
1829
1902
+
His
GTG
[ENA]
¡û
>W1810153643
PIXO01000009
Bacillota
Macrococcus caseolyticus 5816_BC109 [PIXO]
70231
70158
-
His
GTG
[ENA]
¡û
>W1810153714
PIXP01000019
Bacillota
Macrococcus caseolyticus 5818_BC116 [PIXP]
1829
1902
+
His
GTG
[ENA]
¡û
>W1810186845
PKHF01000034
Bacillota
Facklamia hominis UMB0111 [PKHF]
16678
16604
-
His
GTG
[ENA]
¡û
>W1810426837
PYWK01000009
Bacillota
Metasolibacillus fluoroglycofenilyticus cmg86 [PYWK]
1228
1303
+
His
GTG
[ENA]
¡û
>W1810443777
PZJF01000008
Bacillota
Macrococcus caseolyticus subsp. caseolyticus CCM 3540 [PZJF]
78535
78462
-
His
GTG
[ENA]
¡û
>W1810443822
PZJG01000001
Bacillota
Macrococcus bohemicus 03/115 [PZJG]
1607
1680
+
His
GTG
[ENA]
¡û
>W1810443888
PZJH01000004
Bacillota
Macrococcus epidermidis 01/688 [PZJH]
1838
1911
+
His
GTG
[ENA]
¡û
>W1810443897
PZJH01000004
Bacillota
Macrococcus epidermidis 01/688 [PZJH]
60931
61006
+
His
GTG
[ENA]
¡û
>W1810763254
QQAY01000003
Bacillota
Falsibacillus pallidus DSM 25281 [QQAY]
455085
455010
-
His
GTG
[ENA]
¡û
>W1511693328
LFZU01000001
Bacillota
Bacillus sp. FJAT-27231 [LFZU]
1990805
1990880
+
His
GTG
[ENA]
¡û
>W1511693381
LFZU01000001
Bacillota
Bacillus sp. FJAT-27231 [LFZU]
2382999
2382924
-
His
GTG
[ENA]
¡û
>C161056057
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
1817978
1818053
+
His
GTG
[Ensembl]
¡û
>C161056063
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
1818669
1818744
+
His
GTG
[Ensembl]
¡û
>C161056133
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
485385
485310
-
His
GTG
[Ensembl]
¡û
>C161056161
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
481528
481453
-
His
GTG
[Ensembl]
¡û
>W1610099807
CYYS01000040
Bacillota
Turicibacter sanguinis [CYYS]
4
79
+
His
GTG
[ENA]
¡û
>W1610099836
CYYS01000076
Bacillota
Turicibacter sanguinis [CYYS]
259
184
-
His
GTG
[ENA]
¡û
>W1610099855
CYYS01000077
Bacillota
Turicibacter sanguinis [CYYS]
1795
1870
+
His
GTG
[ENA]
¡û
>W1610099858
CYYS01000086
Bacillota
Turicibacter sanguinis [CYYS]
775
700
-
His
GTG
[ENA]
¡û
>W1610099864
CYYS01000086
Bacillota
Turicibacter sanguinis [CYYS]
84
9
-
His
GTG
[ENA]
¡û
>W1610101347
CYZQ01000053
Bacillota
Turicibacter sanguinis [CYZQ]
86
11
-
His
GTG
[ENA]
¡û
>W1610101348
CYZQ01000059
Bacillota
Turicibacter sanguinis [CYZQ]
4
79
+
His
GTG
[ENA]
¡û
>W1610593600
LDTP01000124
Bacillota
Mammaliicoccus sciuri [LDTP]
374
449
+
His
GTG
[ENA]
¡û
>W1610650242
LJIX01000006
Bacillota
Cytobacillus solani FJAT-18043 [LJIX]
810149
810224
+
His
GTG
[ENA]
¡û
>W1610721451
LMBX01000004
Bacillota
Cytobacillus praedii FJAT-25547 [LMBX]
1256
1331
+
His
GTG
[ENA]
¡û
>W1610721560
LMBY01000031
Bacillota
Cytobacillus dafuensis FJAT-25496 [LMBY]
956
1030
+
His
GTG
[ENA]
¡û
>W1610721561
LMBY01000031
Bacillota
Cytobacillus dafuensis FJAT-25496 [LMBY]
1060
1134
+
His
GTG
[ENA]
¡û
>W1610907261
LSDB01000052
Bacillota
Gemella asaccharolytica [LSDB]
70821
70746
-
His
GTG
[ENA]
¡û
>W1610931066
LUFJ01000012
Bacillota
[Bacillus] sp. KCTC 13219 KCTC 13219 [LUFJ]
385844
385769
-
His
GTG
[ENA]
¡û
>W1610941061
LUUN01000001
Bacillota
Cytobacillus horneckiae [LUUN]
171039
171114
+
His
GTG
[ENA]
¡û
>W1610941128
LUUN01000004
Bacillota
Cytobacillus horneckiae [LUUN]
255887
255962
+
His
GTG
[ENA]
¡û
>W1610979166
LWAC01000069
Bacillota
Staphylococcus cohnii [LWAC]
2185
2258
+
His
GTG
[ENA]
¡û
>W1710102562
CYYS01000040
Bacillota
Turicibacter sanguinis [CYYS]
4
79
+
His
GTG
[ENA]
¡û
>W1710102591
CYYS01000076
Bacillota
Turicibacter sanguinis [CYYS]
259
184
-
His
GTG
[ENA]
¡û
>W1710102610
CYYS01000077
Bacillota
Turicibacter sanguinis [CYYS]
1795
1870
+
His
GTG
[ENA]
¡û
>W1710102613
CYYS01000086
Bacillota
Turicibacter sanguinis [CYYS]
775
700
-
His
GTG
[ENA]
¡û
>W1710102619
CYYS01000086
Bacillota
Turicibacter sanguinis [CYYS]
84
9
-
His
GTG
[ENA]
¡û
>W1710104102
CYZQ01000053
Bacillota
Turicibacter sanguinis [CYZQ]
86
11
-
His
GTG
[ENA]
¡û
>W1710104103
CYZQ01000059
Bacillota
Turicibacter sanguinis [CYZQ]
4
79
+
His
GTG
[ENA]
¡û
>W1710514110
FNAR01000024
Bacillota
Bhargavaea beijingensis [FNAR]
694
769
+
His
GTG
[ENA]
¡û
>W1710516214
FNCK01000014
Bacillota
Facklamia miroungae [FNCK]
28445
28371
-
His
GTG
[ENA]
¡û
>W1710542556
FNZF01000012
Bacillota
Bhargavaea ginsengi [FNZF]
19799
19724
-
His
GTG
[ENA]
¡û
>W1710547126
FOCR01000019
Bacillota
Lysinibacillus fusiformis SG45 [FOCR]
842
917
+
His
GTG
[ENA]
¡û
>W1710575997
FOZQ01000036
Bacillota
Lysinibacillus sp. SG55 [FOZQ]
3684
3609
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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