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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237405 (76 seq.)
>W1711170215
LWAF01000019
Thermotogota
Fervidobacterium thailandense thailandensis [LWAF]
21476
21401
-
Gly
TCC
[ENA]
¡û
>C171000418
CP007121
Thermotogota
Thermosipho sp. 1070 [CP007121]
360151
360226
+
Gly
TCC
-
¡û
>C171000730
CP007223
Thermotogota
Thermosipho sp. 1063 [CP007223]
360171
360246
+
Gly
TCC
-
¡û
>C171001362
CP007389
Thermotogota
Thermosipho melanesiensis 431 [CP007389]
125791
125866
+
Gly
TCC
-
¡û
>C025672
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
206481
206406
-
Gly
TCC
-
¡û
>C025677
CP000716
Thermotogota
Thermosipho melanesiensis BI429 [CP000716]
125791
125866
+
Gly
TCC
[Ensembl]
¡û
>C025775
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
737048
737123
+
Gly
TCC
[Ensembl]
¡û
>w019741
AAUK01000011
Thermotogota
Fervidobacterium nodosum Rt17-B1 [AAUK]
16947
17022
+
Gly
TCC
[ENA]
¡û
>WENV180097237
MTBK01175789
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
5383
5308
-
Gly
TCC
[ENA]
¢þ
>W141020314
AJIP01000043
Thermotogota
Thermosipho africanus H17ap60334 [AJIP]
101026
101101
+
Gly
TCC
[ENA]
¡û
>W141070759
ASGQ01000004
Thermotogota
Thermotoga neapolitana LA10 [ASGQ]
217342
217417
+
Gly
TCC
[ENA]
¡û
>W141082667
AUNF01000052
Thermotogota
Thermotoga sp. A7A [AUNF]
17084
17009
-
Gly
TCC
[ENA]
¡û
>WENV181226255
OFDK01000388
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
6464
6539
+
Gly
TCC
[ENA]
¢þ
>WENV181285316
OFGS01000002
[OFGS] hot springs metagenome; Water and soil
133548
133623
+
Gly
TCC
[ENA]
¢þ
>WENV181407964
OGCH01000294
[OGCH] hot springs metagenome; hot springs
10714
10639
-
Gly
TCC
[ENA]
¢þ
>WENV181408918
OGCH01023322
[OGCH] hot springs metagenome; hot springs
919
992
+
Gly
TCC
[ENA]
¢þ
>C08005001
CP000771
Thermotogota
Fervidobacterium nodosum Rt17-B1 [CP000771]
1133385
1133313
-
Gly
TCC
[Ensembl]
¡û
>C08010886
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
772733
772808
+
Gly
TCC
[Ensembl]
¡û
>WENV170676174
LDZR01001299
[LDZR] terrestrial metagenome; oil reservoir sample K2
4565
4640
+
Gly
TCC
[ENA]
¢þ
>WENV170676769
LDZS01002199
[LDZS] terrestrial metagenome; oil reservoir sample K3
2684
2759
+
Gly
TCC
[ENA]
¢þ
>WENV170779364
LZQN01003106
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
830
755
-
Gly
TCC
[ENA]
¢þ
>W09106561
AAWB01000011
Thermotogota
Thermotoga petrophila RKU-1 [AAWB]
56178
56103
-
Gly
TCC
[ENA]
¡û
>W09106602
AAWH01000018
Thermotogota
Thermosipho melanesiensis BI429 [AAWH]
27932
28007
+
Gly
TCC
[ENA]
¡û
>W09107406
ABIJ01000003
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
34785
34860
+
Gly
TCC
[ENA]
¡û
>W09112237
ABXR01000030
Thermotogota
Marinitoga piezophila KA3 [ABXR]
35210
35285
+
Gly
TCC
[ENA]
¡û
>W1910129020
BHXD01000013
Thermotogota
Thermosipho globiformans JCM 15059 [BHXD]
13006
12931
-
Gly
TCC
[ENA]
¡û
>C09106790
CP001634
Thermotogota
Kosmotoga olearia TBF 19.5.1 [CP001634]
356010
356085
+
Gly
TCC
[Ensembl]
¡û
>C141011517
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
739138
739213
+
Gly
TCC
-
¡û
>C09110447
CP001185
Thermotogota
Thermosipho africanus TCF52B [CP001185]
354688
354763
+
Gly
TCC
[Ensembl]
¡û
>C09110632
CP000916
Thermotogota
Thermotoga neapolitana DSM 4359 [CP000916]
489234
489309
+
Gly
TCC
[Ensembl]
¡û
>W1910573550
JPMG01000012
Thermotogota
Fervidobacterium sp. SC_NGM5_O18 [JPMG]
15102
15027
-
Gly
TCC
[ENA]
¡û
>W1910573587
JPMH01000052
Thermotogota
Fervidobacterium sp. SC_NGM5_G05 [JPMH]
9488
9563
+
Gly
TCC
[ENA]
¡û
>W1910635432
LNDD01000001
Thermotogota
Thermotoga sp. SG1 [LNDD]
252768
252843
+
Gly
TCC
[ENA]
¡û
>W1910635517
LNDE01000003
Thermotogota
Thermotoga sp. KOL6 [LNDE]
155493
155418
-
Gly
TCC
[ENA]
¡û
>W1910990265
NKRG01000001
Thermotogota
Thermosipho africanus Ob7 [NKRG]
216295
216220
-
Gly
TCC
[ENA]
¡û
>C151004262
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
777500
777575
+
Gly
TCC
[Ensembl]
¡û
>C151004308
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
722157
722232
+
Gly
TCC
[Ensembl]
¡û
>C151030622
CP007633
Thermotogota
Thermotoga sp. RQ7 [CP007633]
766527
766602
+
Gly
TCC
[Ensembl]
¡û
>C151074632
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
206484
206409
-
Gly
TCC
[Ensembl]
¡û
>C151076986
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
206484
206409
-
Gly
TCC
[Ensembl]
¡û
>C151077032
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
206484
206409
-
Gly
TCC
[Ensembl]
¡û
>C151078470
CP011232
Thermotogota
Kosmotoga pacifica SLHLJ1 [CP011232]
2112794
2112869
+
Gly
TCC
[Ensembl]
¡û
>W10105819
ACXW01000001
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
203597
203522
-
Gly
TCC
[ENA]
¡û
>C10113512
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
857774
857699
-
Gly
TCC
[Ensembl]
¡û
>W11108139
ACXW01000001
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
203597
203522
-
Gly
TCC
[ENA]
¡û
>W1511355434
JRRD02000001
Thermotogota
Fervidobacterium islandicum AW-1 [JRRD]
1578695
1578770
+
Gly
TCC
[ENA]
¡û
>W11180819
AGIJ01000003
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
203301
203226
-
Gly
TCC
[ENA]
¡û
>C121009891
CP003260
Thermotogota
Fervidobacterium pennivorans DSM 9078 [CP003260]
1301337
1301412
+
Gly
TCC
[Ensembl]
¡û
>C161034982
CP011393
Thermotogota
Fervidobacterium pennivorans DYC [CP011393]
1927831
1927906
+
Gly
TCC
[Ensembl]
¡û
>C161071278
CP014334
Thermotogota
Fervidobacterium islandicum AW-1 [CP014334]
1330827
1330902
+
Gly
TCC
[Ensembl]
¡û
>W121010832
AGJO01000002
Thermotogota
Fervidobacterium pennivorans DSM 9078 [AGJO]
304748
304673
-
Gly
TCC
[ENA]
¡û
>W121062176
AJII01000007
Thermotogota
Thermotoga sp. EMP [AJII]
205302
205377
+
Gly
TCC
[ENA]
¡û
>C131012522
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
206484
206409
-
Gly
TCC
-
¡û
>W1610540352
JSFG01000015
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
166486
166561
+
Gly
TCC
[ENA]
¡û
>W1610540365
JSFH01000004
Thermotogota
Thermotoga sp. Mc24 [JSFH]
93425
93500
+
Gly
TCC
[ENA]
¡û
>W1610540444
JSFI01000014
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
154759
154834
+
Gly
TCC
[ENA]
¡û
>W1610540467
JSFJ01000009
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
89147
89072
-
Gly
TCC
[ENA]
¡û
>W1610612920
LGFG01000051
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
4565
4640
+
Gly
TCC
[ENA]
¡û
>W1610613159
LGFM01000068
Thermotogota
Thermotoga sp. 47_83 [LGFM]
2684
2759
+
Gly
TCC
[ENA]
¡û
>W1710517600
FNDL01000016
Thermotogota
Fervidobacterium changbaicum [FNDL]
8793
8718
-
Gly
TCC
[ENA]
¡û
>W1710586869
FQXN01000002
Thermotogota
Thermosipho atlanticus DSM 15807 [FQXN]
279978
279903
-
Gly
TCC
[ENA]
¡û
>W1710593348
FRDJ01000004
Thermotogota
Fervidobacterium gondwanense DSM 13020 [FRDJ]
163433
163508
+
Gly
TCC
[ENA]
¡û
>W1710643373
JSFG01000015
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
166486
166561
+
Gly
TCC
[ENA]
¡û
>W1710643386
JSFH01000004
Thermotogota
Thermotoga sp. Mc24 [JSFH]
93425
93500
+
Gly
TCC
[ENA]
¡û
>W1710643465
JSFI01000014
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
154759
154834
+
Gly
TCC
[ENA]
¡û
>W1710643488
JSFJ01000009
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
89147
89072
-
Gly
TCC
[ENA]
¡û
>W1710660928
JYCX01000001
Thermotogota
Thermosipho melanesiensis [JYCX]
125791
125866
+
Gly
TCC
[ENA]
¡û
>W1710660976
JYCY01000001
Thermotogota
Thermosipho melanesiensis [JYCY]
125791
125866
+
Gly
TCC
[ENA]
¡û
>W1710661022
JYCZ01000001
Thermotogota
Thermosipho melanesiensis [JYCZ]
125791
125866
+
Gly
TCC
[ENA]
¡û
>W1710661068
JYDA01000001
Thermotogota
Thermosipho melanesiensis [JYDA]
125686
125761
+
Gly
TCC
[ENA]
¡û
>W1710661112
JYDB01000001
Thermotogota
Thermosipho melanesiensis [JYDB]
125667
125742
+
Gly
TCC
[ENA]
¡û
>W1710701225
LBEX01000004
Thermotogota
Thermosipho sp. 1074 [LBEX]
51135
51210
+
Gly
TCC
[ENA]
¡û
>W1710701271
LBEY01000006
Thermotogota
Thermosipho sp. 1223 [LBEY]
44258
44333
+
Gly
TCC
[ENA]
¡û
>W1710701315
LBFC01000006
Thermotogota
Thermosipho affectus [LBFC]
49625
49700
+
Gly
TCC
[ENA]
¡û
>W1710734202
LGFG01000051
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
4565
4640
+
Gly
TCC
[ENA]
¡û
>W1710734366
LGFM01000068
Thermotogota
Thermotoga sp. 47_83 [LGFM]
2684
2759
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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