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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237409 (35 seq.)
>W1711170191
LWAF01000002
Thermotogota
Fervidobacterium thailandense thailandensis [LWAF]
31782
31707
-
Ala
CGC
[ENA]
¡û
>C171000459
CP007121
Thermotogota
Thermosipho sp. 1070 [CP007121]
353548
353473
-
Ala
CGC
-
¡û
>C171000771
CP007223
Thermotogota
Thermosipho sp. 1063 [CP007223]
353568
353493
-
Ala
CGC
-
¡û
>C171001404
CP007389
Thermotogota
Thermosipho melanesiensis 431 [CP007389]
119382
119307
-
Ala
CGC
-
¡û
>C025721
CP000716
Thermotogota
Thermosipho melanesiensis BI429 [CP000716]
119382
119307
-
Ala
CGC
[Ensembl]
¡û
>w019733
AAUK01000007
Thermotogota
Fervidobacterium nodosum Rt17-B1 [AAUK]
63121
63198
+
Ala
CGC
[ENA]
¡û
>WENV180014113
FPIC01057166
[FPIC] soil metagenome; Soil
189
264
+
Ala
CGC
[ENA]
¢þ
>WENV180015153
FQKF010370478
[FQKF] soil metagenome; Soil
77
2
-
Ala
CGC
[ENA]
¢þ
>WENV180095549
MTBK01073672
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
95
170
+
Ala
CGC
[ENA]
¢þ
>W141020318
AJIP01000043
Thermotogota
Thermosipho africanus H17ap60334 [AJIP]
94780
94705
-
Ala
CGC
[ENA]
¡û
>WENV181226209
OFDK01000211
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
11780
11705
-
Ala
CGC
[ENA]
¢þ
>WENV181285333
OFGS01000003
[OFGS] hot springs metagenome; Water and soil
313395
313470
+
Ala
CGC
[ENA]
¢þ
>C08004971
CP000771
Thermotogota
Fervidobacterium nodosum Rt17-B1 [CP000771]
568302
568377
+
Ala
CGC
[Ensembl]
¡û
>W09106606
AAWH01000018
Thermotogota
Thermosipho melanesiensis BI429 [AAWH]
21523
21448
-
Ala
CGC
[ENA]
¡û
>C09110488
CP001185
Thermotogota
Thermosipho africanus TCF52B [CP001185]
348440
348365
-
Ala
CGC
[Ensembl]
¡û
>W1910129018
BHXD01000013
Thermotogota
Thermosipho globiformans JCM 15059 [BHXD]
19253
19328
+
Ala
CGC
[ENA]
¡û
>W1910573545
JPMG01000011
Thermotogota
Fervidobacterium sp. SC_NGM5_O18 [JPMG]
7281
7356
+
Ala
CGC
[ENA]
¡û
>W1910573573
JPMH01000015
Thermotogota
Fervidobacterium sp. SC_NGM5_G05 [JPMH]
7453
7378
-
Ala
CGC
[ENA]
¡û
>W1910990258
NKRG01000001
Thermotogota
Thermosipho africanus Ob7 [NKRG]
222543
222618
+
Ala
CGC
[ENA]
¡û
>W1511355420
JRRD02000001
Thermotogota
Fervidobacterium islandicum AW-1 [JRRD]
422256
422331
+
Ala
CGC
[ENA]
¡û
>C121009916
CP003260
Thermotogota
Fervidobacterium pennivorans DSM 9078 [CP003260]
580322
580247
-
Ala
CGC
[Ensembl]
¡û
>C161034968
CP011393
Thermotogota
Fervidobacterium pennivorans DYC [CP011393]
819000
819075
+
Ala
CGC
[Ensembl]
¡û
>C161071302
CP014334
Thermotogota
Fervidobacterium islandicum AW-1 [CP014334]
655897
655822
-
Ala
CGC
[Ensembl]
¡û
>W121010844
AGJO01000004
Thermotogota
Fervidobacterium pennivorans DSM 9078 [AGJO]
140722
140797
+
Ala
CGC
[ENA]
¡û
>W1710517594
FNDL01000012
Thermotogota
Fervidobacterium changbaicum [FNDL]
44248
44323
+
Ala
CGC
[ENA]
¡û
>W1710586867
FQXN01000002
Thermotogota
Thermosipho atlanticus DSM 15807 [FQXN]
287517
287592
+
Ala
CGC
[ENA]
¡û
>W1710593334
FRDJ01000002
Thermotogota
Fervidobacterium gondwanense DSM 13020 [FRDJ]
218298
218223
-
Ala
CGC
[ENA]
¡û
>W1710660934
JYCX01000001
Thermotogota
Thermosipho melanesiensis [JYCX]
119382
119307
-
Ala
CGC
[ENA]
¡û
>W1710660982
JYCY01000001
Thermotogota
Thermosipho melanesiensis [JYCY]
119382
119307
-
Ala
CGC
[ENA]
¡û
>W1710661028
JYCZ01000001
Thermotogota
Thermosipho melanesiensis [JYCZ]
119382
119307
-
Ala
CGC
[ENA]
¡û
>W1710661074
JYDA01000001
Thermotogota
Thermosipho melanesiensis [JYDA]
119277
119202
-
Ala
CGC
[ENA]
¡û
>W1710661118
JYDB01000001
Thermotogota
Thermosipho melanesiensis [JYDB]
119258
119183
-
Ala
CGC
[ENA]
¡û
>W1710701231
LBEX01000004
Thermotogota
Thermosipho sp. 1074 [LBEX]
44532
44457
-
Ala
CGC
[ENA]
¡û
>W1710701277
LBEY01000006
Thermotogota
Thermosipho sp. 1223 [LBEY]
37654
37579
-
Ala
CGC
[ENA]
¡û
>W1710701321
LBFC01000006
Thermotogota
Thermosipho affectus [LBFC]
43022
42947
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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