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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237414 (29 seq.)
>W1711129663
LUUF01000074
Gammaproteobacteria
Methylomonas methanica [LUUF]
35768
35843
+
Thr
CGT
[ENA]
¡û
>W1711129692
LUUG01000060
Gammaproteobacteria
Methylomonas methanica [LUUG]
42906
42981
+
Thr
CGT
[ENA]
¡û
>W1711129745
LUUH01000062
Gammaproteobacteria
Methylomonas methanica [LUUH]
55786
55711
-
Thr
CGT
[ENA]
¡û
>W1711129788
LUUI01000142
Gammaproteobacteria
Methylomonas lenta [LUUI]
23193
23118
-
Thr
CGT
[ENA]
¡û
>W1711129838
LUUJ01000124
Gammaproteobacteria
Methylomonas koyamae [LUUJ]
5897
5972
+
Thr
CGT
[ENA]
¡û
>W1711129874
LUUK01000176
Gammaproteobacteria
Methylomonas koyamae [LUUK]
31166
31091
-
Thr
CGT
[ENA]
¡û
>W1711129914
LUUL01000080
Gammaproteobacteria
Methylomonas koyamae [LUUL]
50970
51045
+
Thr
CGT
[ENA]
¡û
>W131155771
AQOV01000002
Gammaproteobacteria
Methylomonas sp. MK1 [AQOV]
129856
129931
+
Thr
CGT
[ENA]
¡û
>W1711494864
MKMC01000034
Gammaproteobacteria
Methylomonas sp. LWB [MKMC]
239120
239195
+
Thr
CGT
[ENA]
¡û
>W141219934
AZXK01000002
Gammaproteobacteria
Methylomonas sp. 11b [AZXK]
1542323
1542248
-
Thr
CGT
[ENA]
¡û
>WENV170577531
FSSH01000120
[FSSH] freshwater metagenome; drinking water
79084
79009
-
Thr
CGT
[ENA]
¢þ
>WENV170577734
FSSH01000684
[FSSH] freshwater metagenome; drinking water
16380
16455
+
Thr
CGT
[ENA]
¢þ
>C181088671
CP023669
Gammaproteobacteria
Methylomonas koyamae LM6 [CP023669]
4866508
4866433
-
Thr
CGT
-
¡û
>C191105404
CP033381
Gammaproteobacteria
Methylomonas sp. LW13 [CP033381]
510909
510984
+
Thr
CGT
-
¡û
>W141733716
JNLB01000014
Gammaproteobacteria
Methylomonas sp. LW13 [JNLB]
126067
126142
+
Thr
CGT
[ENA]
¡û
>W1810154907
PIZT01000001
Gammaproteobacteria
Methylomonas sp. Kb3 [PIZT]
125787
125862
+
Thr
CGT
[ENA]
¡û
>C11114733
CP002738
Gammaproteobacteria
Methylomonas methanica MC09 [CP002738]
4624446
4624521
+
Thr
CGT
[Ensembl]
¡û
>W1511397874
JTDD01000047
Gammaproteobacteria
Methylomonas denitrificans FJG1 [JTDD]
50853
50928
+
Thr
CGT
[ENA]
¡û
>C161072121
CP014360
Gammaproteobacteria
Methylomonas sp. DH-1 [CP014360]
4820480
4820405
-
Thr
CGT
[Ensembl]
¡û
>C161072459
CP014476
Gammaproteobacteria
Methylomonas denitrificans FJG1 [CP014476]
1642219
1642144
-
Thr
CGT
[Ensembl]
¡û
>W1610046473
BBCK01000016
Gammaproteobacteria
Methylomonas koyamae JCM 16701 [BBCK]
39799
39724
-
Thr
CGT
[ENA]
¡û
>W1610940736
LUUF01000074
Gammaproteobacteria
Methylomonas methanica [LUUF]
35768
35843
+
Thr
CGT
[ENA]
¡û
>W1610940765
LUUG01000060
Gammaproteobacteria
Methylomonas methanica [LUUG]
42906
42981
+
Thr
CGT
[ENA]
¡û
>W1610940818
LUUH01000062
Gammaproteobacteria
Methylomonas methanica [LUUH]
55786
55711
-
Thr
CGT
[ENA]
¡û
>W1610940861
LUUI01000142
Gammaproteobacteria
Methylomonas lenta [LUUI]
23193
23118
-
Thr
CGT
[ENA]
¡û
>W1610940911
LUUJ01000124
Gammaproteobacteria
Methylomonas koyamae [LUUJ]
5897
5972
+
Thr
CGT
[ENA]
¡û
>W1610940947
LUUK01000176
Gammaproteobacteria
Methylomonas koyamae [LUUK]
31166
31091
-
Thr
CGT
[ENA]
¡û
>W1610940987
LUUL01000080
Gammaproteobacteria
Methylomonas koyamae [LUUL]
50970
51045
+
Thr
CGT
[ENA]
¡û
>W1710043269
BBCK01000016
Gammaproteobacteria
Methylomonas koyamae JCM 16701 [BBCK]
39799
39724
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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