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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237427 (107 seq.)
>W1711047597
LRPC01000028
Bacteroidota
Roseivirga spongicola [LRPC]
711050
710977
-
Thr
TGT
[ENA]
¡û
>W1711047598
LRPC01000028
Bacteroidota
Roseivirga spongicola [LRPC]
710938
710863
-
Thr
TGT
[ENA]
¡û
>W1711356784
MDGP01000001
Bacteroidota
Roseivirga sp. 4D4 4D4 [MDGP]
1302463
1302390
-
Thr
TGT
[ENA]
¡û
>W1711356812
MDGQ01000005
Bacteroidota
Roseivirga misakiensis [MDGQ]
1331424
1331497
+
Thr
TGT
[ENA]
¡û
>W1711360552
MDJS01000001
Bacteroidota
Mucilaginibacter sp. PPCGB 2223 [MDJS]
2337750
2337677
-
Thr
TGT
[ENA]
¡û
>W131218701
ATXY01000006
Bacteroidota
Flectobacillus major DSM 103 [ATXY]
644923
644848
-
Thr
TGT
[ENA]
¡û
>W1711712747
MTCM01000001
Bacteroidota
Sphingobacterium sp. CZ-UAM [MTCM]
1448702
1448629
-
Thr
TGT
[ENA]
¡û
>W1711712748
MTCM01000001
Bacteroidota
Sphingobacterium sp. CZ-UAM [MTCM]
1448596
1448523
-
Thr
TGT
[ENA]
¡û
>W1711712749
MTCM01000001
Bacteroidota
Sphingobacterium sp. CZ-UAM [MTCM]
1448488
1448413
-
Thr
TGT
[ENA]
¡û
>W1711712790
MTCM01000005
Bacteroidota
Sphingobacterium sp. CZ-UAM [MTCM]
15518
15443
-
Thr
TGT
[ENA]
¡û
>C171057666
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
1683513
1683440
-
Thr
TGT
-
¡û
>w027784
ABCM01000005
Bacteroidota
Pedobacter sp. BAL39 [ABCM]
171454
171531
+
Thr
TGT
[ENA]
¡û
>WENV180030495
FTJM01122054
[FTJM] metagenome; soil
212
139
-
Thr
TGT
[ENA]
¢þ
>WENV180391229
OBPM01047795
[OBPM] marine metagenome; ENVO:00002010
244
317
+
Thr
TGT
[ENA]
¢þ
>WENV181839012
OGVN01052038
[OGVN] freshwater metagenome; freshwater
257
330
+
Thr
TGT
[ENA]
¢þ
>WENV183092196
OLKV01000251
[OLKV] soil metagenome; soil
1836
1909
+
Thr
TGT
[ENA]
¢þ
>WENV183728016
PJTP01017300
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
573
500
-
Thr
TGT
[ENA]
¢þ
>WENV183729528
PJTQ01060107
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
123
196
+
Thr
TGT
[ENA]
¢þ
>WENV183729691
PJTR01000018
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
236895
236970
+
Thr
TGT
[ENA]
¢þ
>WENV183730910
PJTS01001986
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
580
505
-
Thr
TGT
[ENA]
¢þ
>WENV183731512
PJTT01000013
[PJTT] soil metagenome; Soil (2) enriched on wood chips
48883
48808
-
Thr
TGT
[ENA]
¢þ
>WENV183732319
PJTX01000011
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
64426
64499
+
Thr
TGT
[ENA]
¢þ
>WENV183732320
PJTX01000011
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
64532
64605
+
Thr
TGT
[ENA]
¢þ
>WENV183732349
PJTX01000041
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
6033
5958
-
Thr
TGT
[ENA]
¢þ
>WENV183732500
PJTX01001171
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
5853
5926
+
Thr
TGT
[ENA]
¢þ
>WENV183732550
PJTX01001952
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
4266
4339
+
Thr
TGT
[ENA]
¢þ
>WENV183732990
PJTY01000013
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
6033
5958
-
Thr
TGT
[ENA]
¢þ
>WENV183733046
PJTY01000029
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
133987
133914
-
Thr
TGT
[ENA]
¢þ
>WENV183733047
PJTY01000029
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
133881
133808
-
Thr
TGT
[ENA]
¢þ
>WENV183734060
PJTZ01000033
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
133987
133914
-
Thr
TGT
[ENA]
¢þ
>WENV183734061
PJTZ01000033
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
133881
133808
-
Thr
TGT
[ENA]
¢þ
>WENV183734064
PJTZ01000036
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
6033
5958
-
Thr
TGT
[ENA]
¢þ
>WENV183734092
PJTZ01000050
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
461
388
-
Thr
TGT
[ENA]
¢þ
>WENV183734124
PJTZ01000070
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
464
391
-
Thr
TGT
[ENA]
¢þ
>WENV183735234
PJUA01004808
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
1579
1652
+
Thr
TGT
[ENA]
¢þ
>WENV183735251
PJUA01005699
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
1491
1418
-
Thr
TGT
[ENA]
¢þ
>WENV183735867
PJUB01006676
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
184
111
-
Thr
TGT
[ENA]
¢þ
>WENV183736781
PJUD01000023
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
227322
227249
-
Thr
TGT
[ENA]
¢þ
>WENV183736782
PJUD01000023
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
227216
227143
-
Thr
TGT
[ENA]
¢þ
>WENV183736988
PJUD01000182
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
186
111
-
Thr
TGT
[ENA]
¢þ
>WENV183737369
PJUD01004950
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
403
330
-
Thr
TGT
[ENA]
¢þ
>WENV183738582
PJUE01000028
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
227322
227249
-
Thr
TGT
[ENA]
¢þ
>WENV183738583
PJUE01000028
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
227216
227143
-
Thr
TGT
[ENA]
¢þ
>WENV183738800
PJUE01000213
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
57273
57348
+
Thr
TGT
[ENA]
¢þ
>WENV183740403
PJUF01001695
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
3
76
+
Thr
TGT
[ENA]
¢þ
>WENV183740703
PJUF01007109
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
186
111
-
Thr
TGT
[ENA]
¢þ
>WENV183741393
PJUG01000003
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
331229
331302
+
Thr
TGT
[ENA]
¢þ
>WENV183741395
PJUG01000003
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
331438
331511
+
Thr
TGT
[ENA]
¢þ
>WENV183741885
PJUH01000002
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
331229
331302
+
Thr
TGT
[ENA]
¢þ
>WENV183741887
PJUH01000002
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
331438
331511
+
Thr
TGT
[ENA]
¢þ
>WENV183742487
PJUI01000004
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
331229
331302
+
Thr
TGT
[ENA]
¢þ
>WENV183742489
PJUI01000004
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
331438
331511
+
Thr
TGT
[ENA]
¢þ
>WENV183742970
PJUJ01000002
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
658763
658690
-
Thr
TGT
[ENA]
¢þ
>WENV183742972
PJUJ01000002
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
658554
658481
-
Thr
TGT
[ENA]
¢þ
>WENV183743343
PJUJ01000565
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
127
200
+
Thr
TGT
[ENA]
¢þ
>WENV183743804
PJUK01000003
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
331229
331302
+
Thr
TGT
[ENA]
¢þ
>WENV183743806
PJUK01000003
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
331438
331511
+
Thr
TGT
[ENA]
¢þ
>C181001406
AP017313
Bacteroidota
Mucilaginibacter gotjawali SA3-7 [AP017313]
3992986
3992913
-
Thr
TGT
-
¡û
>C181071981
CP022743
Bacteroidota
Mucilaginibacter xinganensis BJC16-A31 [CP022743]
1866367
1866440
+
Thr
TGT
-
¡û
>C181179082
CP029480
Bacteroidota
Arcticibacterium luteifluviistationis SM1504 [CP029480]
2050175
2050102
-
Thr
TGT
-
¡û
>C191222307
LR590484
Bacteroidota
Sphingobacterium thalpophilum NCTC11429 [LR590484]
4721117
4721190
+
Thr
TGT
-
¡û
>C191222308
LR590484
Bacteroidota
Sphingobacterium thalpophilum NCTC11429 [LR590484]
4721223
4721296
+
Thr
TGT
-
¡û
>C191222339
LR590484
Bacteroidota
Sphingobacterium thalpophilum NCTC11429 [LR590484]
721750
721675
-
Thr
TGT
-
¡û
>W141701955
JMLD01000009
Bacteroidota
Sphingobacterium thalpophilum DSM 11723 [JMLD]
110408
110481
+
Thr
TGT
[ENA]
¡û
>W141701956
JMLD01000009
Bacteroidota
Sphingobacterium thalpophilum DSM 11723 [JMLD]
110514
110589
+
Thr
TGT
[ENA]
¡û
>W141701960
JMLD01000012
Bacteroidota
Sphingobacterium thalpophilum DSM 11723 [JMLD]
285485
285558
+
Thr
TGT
[ENA]
¡û
>W141701961
JMLD01000012
Bacteroidota
Sphingobacterium thalpophilum DSM 11723 [JMLD]
285591
285666
+
Thr
TGT
[ENA]
¡û
>W141727642
JNFF01000093
Bacteroidota
Pedobacter antarcticus 4BY [JNFF]
10234
10309
+
Thr
TGT
[ENA]
¡û
>W1910377922
FUKU01000026
Bacteroidota
Sphingobacterium sp. JB170 [FUKU]
286929
286854
-
Thr
TGT
[ENA]
¡û
>W1910378094
FUKX01000052
Bacteroidota
Sphingobacterium faecium PCAi_F2.5 [FUKX]
34512
34585
+
Thr
TGT
[ENA]
¡û
>W1910941800
NJFZ01000005
Bacteroidota
Flectobacillus sp. BAB-3569 [NJFZ]
95075
95148
+
Thr
TGT
[ENA]
¡û
>W1910941801
NJFZ01000005
Bacteroidota
Flectobacillus sp. BAB-3569 [NJFZ]
96105
96178
+
Thr
TGT
[ENA]
¡û
>W1911647405
QAJL01000004
Bacteroidota
Pedobacter sp. KBW06 [QAJL]
339814
339887
+
Thr
TGT
[ENA]
¡û
>W1810002546
BEYR01000001
Bacteroidota
Sphingobacterium sp. HMA12 [BEYR]
1677295
1677222
-
Thr
TGT
[ENA]
¡û
>W1810002547
BEYR01000001
Bacteroidota
Sphingobacterium sp. HMA12 [BEYR]
1677189
1677116
-
Thr
TGT
[ENA]
¡û
>W1810002548
BEYR01000001
Bacteroidota
Sphingobacterium sp. HMA12 [BEYR]
1677082
1677009
-
Thr
TGT
[ENA]
¡û
>W1810002572
BEYR01000005
Bacteroidota
Sphingobacterium sp. HMA12 [BEYR]
14965
14892
-
Thr
TGT
[ENA]
¡û
>W1810346477
PVBQ01000007
Bacteroidota
Sphingobacterium haloxyli 5JN-11 [PVBQ]
190482
190555
+
Thr
TGT
[ENA]
¡û
>W1810346599
PVBS01000003
Bacteroidota
Sphingobacterium gobiense ACCC 05757 [PVBS]
240526
240599
+
Thr
TGT
[ENA]
¡û
>W1810474668
QAIL01000524
Bacteroidota
Pedobacter sp. HMWF019 [QAIL]
1477
1550
+
Thr
TGT
[ENA]
¡û
>W1810531902
QCXX01000001
Bacteroidota
Sphingobacterium athyrii M46 [QCXX]
177266
177193
-
Thr
TGT
[ENA]
¡û
>W1810531903
QCXX01000001
Bacteroidota
Sphingobacterium athyrii M46 [QCXX]
177160
177087
-
Thr
TGT
[ENA]
¡û
>W1810531904
QCXX01000001
Bacteroidota
Sphingobacterium athyrii M46 [QCXX]
177053
176980
-
Thr
TGT
[ENA]
¡û
>W1810531941
QCXX01000007
Bacteroidota
Sphingobacterium athyrii M46 [QCXX]
29285
29212
-
Thr
TGT
[ENA]
¡û
>W1810596496
QGGO01000003
Bacteroidota
Arcicella aurantiaca DSM 22214 [QGGO]
241187
241260
+
Thr
TGT
[ENA]
¡û
>W1810693889
QLLR01000010
Bacteroidota
Pedobacter cryoconitis DSM 14825 [QLLR]
19030
18957
-
Thr
TGT
[ENA]
¡û
>W1511108307
JJMU01000012
Bacteroidota
Sphingobacterium deserti ACCC 05744 [JJMU]
63867
63792
-
Thr
TGT
[ENA]
¡û
>W11138421
AEIH01000176
Bacteroidota
Mucilaginibacter paludis DSM 18603 [AEIH]
98597
98524
-
Thr
TGT
[ENA]
¡û
>W1511509441
JXRA01000117
Bacteroidota
Pedobacter lusitanus NL19 [JXRA]
9239
9166
-
Thr
TGT
[ENA]
¡û
>C161073007
CP014504
Bacteroidota
Pedobacter cryoconitis PAMC 27485 [CP014504]
4391018
4391091
+
Thr
TGT
[Ensembl]
¡û
>C161077150
CP014773
Bacteroidota
Mucilaginibacter sp. PAMC 26640 [CP014773]
2306096
2306169
+
Thr
TGT
[Ensembl]
¡û
>W1610612083
LGEK01000052
Bacteroidota
Mucilaginibacter sp. L294 [LGEK]
4373
4300
-
Thr
TGT
[ENA]
¡û
>W1610870265
LQZQ01000045
Bacteroidota
Roseivirga ehrenbergii [LQZQ]
303442
303517
+
Thr
TGT
[ENA]
¡û
>W1610888726
LRPC01000028
Bacteroidota
Roseivirga spongicola [LRPC]
711050
710977
-
Thr
TGT
[ENA]
¡û
>W1610888727
LRPC01000028
Bacteroidota
Roseivirga spongicola [LRPC]
710938
710863
-
Thr
TGT
[ENA]
¡û
>W1710513651
FNAI01000002
Bacteroidota
Mucilaginibacter pineti [FNAI]
87655
87728
+
Thr
TGT
[ENA]
¡û
>W1710522093
FNGY01000005
Bacteroidota
Pedobacter steynii [FNGY]
225325
225252
-
Thr
TGT
[ENA]
¡û
>W1710522141
FNGZ01000003
Bacteroidota
Pedobacter antarcticus [FNGZ]
274547
274472
-
Thr
TGT
[ENA]
¡û
>W1710525880
FNJV01000011
Bacteroidota
Mucilaginibacter sp. OK268 [FNJV]
44240
44167
-
Thr
TGT
[ENA]
¡û
>W1710533284
FNRA01000002
Bacteroidota
Pedobacter hartonius [FNRA]
190692
190765
+
Thr
TGT
[ENA]
¡û
>W1710548305
FODR01000002
Bacteroidota
Mucilaginibacter sp. OK283 [FODR]
506817
506890
+
Thr
TGT
[ENA]
¡û
>W1710554776
FOIR01000002
Bacteroidota
Roseivirga pacifica pacificus [FOIR]
121753
121826
+
Thr
TGT
[ENA]
¡û
>W1710560896
FONS01000019
Bacteroidota
Pedobacter antarcticus [FONS]
479
404
-
Thr
TGT
[ENA]
¡û
>W1710583273
FQUQ01000010
Bacteroidota
Pedobacter caeni [FQUQ]
73186
73113
-
Thr
TGT
[ENA]
¡û
>W1710592466
FRCM01000005
Bacteroidota
Mucilaginibacter sp. OK098 [FRCM]
549580
549653
+
Thr
TGT
[ENA]
¡û
>W1710595947
FTMG01000009
Bacteroidota
Mucilaginibacter lappiensis [FTMG]
206586
206659
+
Thr
TGT
[ENA]
¡û
>W1710733589
LGEK01000052
Bacteroidota
Mucilaginibacter sp. L294 [LGEK]
4373
4300
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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