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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23744 (20 seq.)
>W1712104773
NIPZ01000116
Alphaproteobacteria
Paracoccus yeei [NIPZ]
19083
19172
+
Ser
TGA
[ENA]
¡û
>C171107673
CP020442
Alphaproteobacteria
Paracoccus yeei FDAARGOS_252 [CP020442]
3602165
3602254
+
Ser
TGA
-
¡û
>W141082608
AUND01000039
Alphaproteobacteria
Thioclava pacifica DSM 10166 [AUND]
35308
35397
+
Ser
TGA
[ENA]
¡û
>WENV183733594
PJTY01005833
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
182
93
-
Ser
TGA
[ENA]
¢þ
>WENV183734514
PJTZ01013556
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
247
158
-
Ser
TGA
[ENA]
¢þ
>C181099792
CP024422
Alphaproteobacteria
Paracoccus yeei TT13 [CP024422]
2774239
2774150
-
Ser
TGA
-
¡û
>C181190834
CP030239
Alphaproteobacteria
Paracoccus mutanolyticus RSP-02 [CP030239]
3572604
3572693
+
Ser
TGA
-
¡û
>C191073576
CP031078
Alphaproteobacteria
Paracoccus yeei CCUG 32053 [CP031078]
1866887
1866976
+
Ser
TGA
-
¡û
>W141558843
JHWH01000001
Alphaproteobacteria
Paracoccus yeei ATCC BAA-599 [JHWH]
21003
21092
+
Ser
TGA
[ENA]
¡û
>C141006330
CP006650
Alphaproteobacteria
Paracoccus aminophilus JCM 7686 [CP006650]
2351213
2351302
+
Ser
TGA
[Ensembl]
¡û
>W1911245325
NSJZ01000003
Alphaproteobacteria
Paracoccus salipaludis WN007 [NSJZ]
258112
258201
+
Ser
TGA
[ENA]
¡û
>W10106930
ACYY01000008
Alphaproteobacteria
Rhodobacter sp. SW2 [ACYY]
60403
60492
+
Ser
TGA
[ENA]
¡û
>W11109219
ACYY01000008
Alphaproteobacteria
Rhodobacter sp. SW2 [ACYY]
60403
60492
+
Ser
TGA
[ENA]
¡û
>W1511348549
JRKN01000007
Alphaproteobacteria
Paracoccus halophilus JCM 14014 [JRKN]
136111
136200
+
Ser
TGA
[ENA]
¡û
>W1511348704
JRKQ01000080
Alphaproteobacteria
Paracoccus sanguinis 5503 [JRKQ]
13070
12981
-
Ser
TGA
[ENA]
¡û
>W1511348763
JRKR01000245
Alphaproteobacteria
Paracoccus sanguinis 10990 [JRKR]
862
951
+
Ser
TGA
[ENA]
¡û
>W1511348854
JRKT01000130
Alphaproteobacteria
Paracoccus sanguinis 4681 [JRKT]
3725
3814
+
Ser
TGA
[ENA]
¡û
>W1710528231
FNNA01000008
Alphaproteobacteria
Paracoccus sanguinis [FNNA]
45455
45366
-
Ser
TGA
[ENA]
¡û
>W1710547696
FODE01000021
Alphaproteobacteria
Paracoccus alcaliphilus [FODE]
76541
76630
+
Ser
TGA
[ENA]
¡û
>W1710555538
FOJO01000003
Alphaproteobacteria
Paracoccus halophilus [FOJO]
44179
44090
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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