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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23749 (21 seq.)
>C171130528
LT671418
Betaproteobacteria
Herminiimonas arsenitoxidans AS8 [LT671418]
1134653
1134564
-
Ser
TGA
-
¡û
>C010376
CU207211
Betaproteobacteria
Herminiimonas arsenicoxydans [CU207211]
2123553
2123464
-
Ser
TGA
[Ensembl]
¡û
>C011115
CP000269
Betaproteobacteria
Janthinobacterium sp. Marseille [CP000269]
1512870
1512959
+
Ser
TGA
[Ensembl]
¡û
>WENV180022323
FTFY01000838
[FTFY] metagenome; soil
12826
12915
+
Ser
TGA
[ENA]
¢þ
>WENV183744264
PJUK01003876
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
817
728
-
Ser
TGA
[ENA]
¢þ
>WENV183745304
PJUL01020669
[PJUL] feces metagenome; Chicken feces enriched on filter paper
166
77
-
Ser
TGA
[ENA]
¢þ
>WENV170559412
CXWL01122407
[CXWL] groundwater metagenome; biofilm material
12961
12872
-
Ser
TGA
[ENA]
¢þ
>WENV170710853
LNFM01002823
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
19317
19228
-
Ser
TGA
[ENA]
¢þ
>W1911572405
PDBX01000002
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
49000
48911
-
Ser
TGA
[ENA]
¡û
>W1911647615
QAJP01000008
Betaproteobacteria
Herminiimonas sp. KBW02 [QAJP]
217188
217099
-
Ser
TGA
[ENA]
¡û
>W1810297206
PTLZ01000001
Betaproteobacteria
Herminiimonas fonticola S-94 [PTLZ]
1310406
1310495
+
Ser
TGA
[ENA]
¡û
>W1810400009
PYFP01000001
Betaproteobacteria
Glaciimonas sp. PCH181 [PYFP]
1062689
1062600
-
Ser
TGA
[ENA]
¡û
>C151062621
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
3169713
3169624
-
Ser
TGA
[Ensembl]
¡û
>C11105063
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
2150734
2150823
+
Ser
TGA
[Ensembl]
¡û
>C161053584
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
2445693
2445782
+
Ser
TGA
[Ensembl]
¡û
>C161053684
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
2423838
2423927
+
Ser
TGA
[Ensembl]
¡û
>C161053808
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
3119322
3119233
-
Ser
TGA
[Ensembl]
¡û
>W1710530374
FNOR01000019
Betaproteobacteria
Collimonas sp. OK242 [FNOR]
99451
99540
+
Ser
TGA
[ENA]
¡û
>W1710556432
FOKF01000001
Betaproteobacteria
Collimonas sp. OK607 [FOKF]
124344
124433
+
Ser
TGA
[ENA]
¡û
>W1710557512
FOLC01000001
Betaproteobacteria
Collimonas sp. OK412 [FOLC]
291124
291213
+
Ser
TGA
[ENA]
¡û
>W1710564233
FOQI01000014
Betaproteobacteria
Collimonas sp. OK307 [FOQI]
43476
43387
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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