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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237508 (101 seq.)
>W1710860231
LMCS01000002
Actinomycetota
Microbacterium sp. Root322 [LMCS]
450130
450205
+
Lys
TTT
[ENA]
¡û
>W1710863949
LMFN01000001
Actinomycetota
Microbacterium sp. Root1433D1 [LMFN]
443547
443622
+
Lys
TTT
[ENA]
¡û
>W1710864211
LMFR01000026
Actinomycetota
Microbacterium sp. Root53 [LMFR]
56724
56651
-
Lys
TTT
[ENA]
¡û
>W1710864549
LMFY01000002
Actinomycetota
Microbacterium sp. Root553 [LMFY]
242314
242239
-
Lys
TTT
[ENA]
¡û
>W1710868867
LMJK01000003
Actinomycetota
Microbacterium sp. Root280D1 [LMJK]
554410
554335
-
Lys
TTT
[ENA]
¡û
>W1710875119
LMOD01000003
Actinomycetota
Microbacterium sp. Leaf320 [LMOD]
332961
333036
+
Lys
TTT
[ENA]
¡û
>W1710875939
LMOU01000002
Actinomycetota
Microbacterium sp. Leaf159 [LMOU]
295888
295963
+
Lys
TTT
[ENA]
¡û
>W1710875998
LMOW01000001
Actinomycetota
Microbacterium sp. Leaf161 [LMOW]
300525
300600
+
Lys
TTT
[ENA]
¡û
>W1710876189
LMPA01000002
Actinomycetota
Plantibacter sp. Leaf171 [LMPA]
1117543
1117618
+
Lys
TTT
[ENA]
¡û
>W1710878848
LMRH01000001
Actinomycetota
Sanguibacter sp. Leaf3 [LMRH]
390942
390867
-
Lys
TTT
[ENA]
¡û
>W1710947786
LOSO01000018
Actinomycetota
Microbacterium sp. CH1 [LOSO]
96894
96819
-
Lys
TTT
[ENA]
¡û
>W1711074813
LSJW01000149
Actinomycetota
Microbacterium sp. CCH5-D1 [LSJW]
64195
64120
-
Lys
TTT
[ENA]
¡û
>W1711173319
LWCT01000048
Actinomycetota
Plantibacter sp. H53 [LWCT]
19321
19396
+
Lys
TTT
[ENA]
¡û
>W1711173360
LWCU01000034
Actinomycetota
Microbacterium sp. H83 [LWCU]
154573
154498
-
Lys
TTT
[ENA]
¡û
>W131162172
AQYI01000005
Actinomycetota
Microbacterium paraoxydans 77MFTsu3.2 [AQYI]
334511
334436
-
Lys
TTT
[ENA]
¡û
>W1711425191
MIEU01000014
Actinomycetota
Tersicoccus sp. Bi-70 [MIEU]
213625
213550
-
Lys
TTT
[ENA]
¡û
>W1711463311
MJIR01000046
Actinomycetota
Microbacterium sp. AR7-10 [MJIR]
16407
16482
+
Lys
TTT
[ENA]
¡û
>W1711501539
MKRT01000009
Actinomycetota
Microbacterium sp. 69-10 [MKRT]
20963
20888
-
Lys
TTT
[ENA]
¡û
>W1711501811
MKSA01000459
Actinomycetota
Microbacterium sp. 70-38 [MKSA]
33352
33277
-
Lys
TTT
[ENA]
¡û
>W1711589062
MODW01000003
Actinomycetota
Microbacterium sp. LCT-H2 [MODW]
99605
99680
+
Lys
TTT
[ENA]
¡û
>W1711963127
NCTV01000030
Actinomycetota
Microbacterium sp. LEMMJ01 [NCTV]
225986
226061
+
Lys
TTT
[ENA]
¡û
>C171073918
CP018151
Actinomycetota
Microbacterium sp. 1.5R [CP018151]
2595300
2595375
+
Lys
TTT
-
¡û
>W131036130
AKVP01000002
Actinomycetota
Microbacterium barkeri 2011-R4 [AKVP]
104784
104859
+
Lys
TTT
[ENA]
¡û
>W131098933
AOSO01000001
Actinomycetota
Microbacterium sp. UCD-TDU [AOSO]
412725
412800
+
Lys
TTT
[ENA]
¡û
>W131226610
AUEM01000007
Actinomycetota
Microbacterium sp. URHA0036 [AUEM]
165284
165359
+
Lys
TTT
[ENA]
¡û
>W141075415
ATAO01000124
Actinomycetota
Microbacterium liquefaciens MF109 [ATAO]
24998
25073
+
Lys
TTT
[ENA]
¡û
>W141187506
AYME01000006
Actinomycetota
Microbacterium paraoxydans DH1b [AYME]
66048
65973
-
Lys
TTT
[ENA]
¡û
>W141222985
BACW01000326
Actinomycetota
Curtobacterium sp. B8 [BACW]
14096
14021
-
Lys
TTT
[ENA]
¡û
>W141289390
JARC01000016
Actinomycetota
Microbacterium sp. Cr-K29 [JARC]
75794
75869
+
Lys
TTT
[ENA]
¡û
>W141289465
JARD01000028
Actinomycetota
Microbacterium sp. Cr-K32 [JARD]
4119
4194
+
Lys
TTT
[ENA]
¡û
>W141289483
JARE01000023
Actinomycetota
Microbacterium sp. Cr-K20 [JARE]
26589
26664
+
Lys
TTT
[ENA]
¡û
>W141289538
JARF01000025
Actinomycetota
Microbacterium sp. Cr-K1W [JARF]
84352
84427
+
Lys
TTT
[ENA]
¡û
>WENV183511570
OMJG01000802
[OMJG] food metagenome; Cotija cheese
6658
6732
+
Lys
TTT
[ENA]
¢þ
>WENV183725706
PJQF01009433
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
203
128
-
Lys
TTT
[ENA]
¢þ
>WENV183729600
PJTQ01085906
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
275
200
-
Lys
TTT
[ENA]
¢þ
>WENV183735191
PJUA01002266
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
2651
2578
-
Lys
TTT
[ENA]
¢þ
>WENV170700631
LIDZ01015848
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
3
78
+
Lys
TTT
[ENA]
¢þ
>WENV170820911
MDSY01013637
[MDSY] marine metagenome; seawater
8758
8833
+
Lys
TTT
[ENA]
¢þ
>C181004086
AP017975
Actinomycetota
Microbacterium sp. TPU 3598 [AP017975]
2827231
2827305
+
Lys
TTT
-
¡û
>C181153096
CP027434
Actinomycetota
Microbacterium sp. str. 'China' [CP027434]
2619827
2619901
+
Lys
TTT
-
¡û
>C181200431
CP031425
Actinomycetota
Microbacterium foliorum NRRL B-24224 [CP031425]
2654430
2654504
+
Lys
TTT
-
¡û
>C191026870
CP024170
Actinomycetota
Microbacterium sp. Y-01 [CP024170]
2942338
2942412
+
Lys
TTT
-
¡û
>C191074610
CP031338
Actinomycetota
Microbacterium oxydans VIU2A [CP031338]
2938650
2938724
+
Lys
TTT
-
¡û
>C191074853
CP031422
Actinomycetota
Microbacterium oxydans HG3 [CP031422]
2914028
2914102
+
Lys
TTT
-
¡û
>C191185971
CP041040
Actinomycetota
Microbacterium foliorum M2 [CP041040]
2605616
2605690
+
Lys
TTT
-
¡û
>W1910183331
BJNQ01000002
Actinomycetota
Microbacterium liquefaciens NBRC 15037 [BJNQ]
160356
160282
-
Lys
TTT
[ENA]
¡û
>W1910184020
BJOG01000002
Actinomycetota
Microbacterium oxydans NBRC 15586 [BJOG]
74846
74772
-
Lys
TTT
[ENA]
¡û
>W1910211968
FMIR01000008
Actinomycetota
Microbacterium oxydans [FMIR]
52470
52396
-
Lys
TTT
[ENA]
¡û
>W1910331217
FSLI01000024
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 1079 [FSLI]
74118
74043
-
Lys
TTT
[ENA]
¡û
>W1910636817
LPVV01000013
Actinomycetota
Microbacterium sp. SZ1 [LPVV]
17181
17255
+
Lys
TTT
[ENA]
¡û
>W1911502891
OEQC01000003
Actinomycetota
Sanguibacter massiliensis Marseille-P3815 [OEQC]
526162
526087
-
Lys
TTT
[ENA]
¡û
>W1911566461
PCOV01000004
Actinomycetota
Microbacterium sp. MYb66 [PCOV]
210826
210751
-
Lys
TTT
[ENA]
¡û
>W1911566606
PCOY01000009
Actinomycetota
Microbacterium sp. MYb62 [PCOY]
115015
115089
+
Lys
TTT
[ENA]
¡û
>W1911566719
PCPA01000016
Actinomycetota
Microbacterium sp. MYb54 [PCPA]
30235
30161
-
Lys
TTT
[ENA]
¡û
>W1911566860
PCPD01000020
Actinomycetota
Microbacterium sp. MYb50 [PCPD]
44115
44189
+
Lys
TTT
[ENA]
¡û
>W1911567011
PCPG01000007
Actinomycetota
Microbacterium sp. MYb45 [PCPG]
78933
79007
+
Lys
TTT
[ENA]
¡û
>W1911567129
PCPI01000024
Actinomycetota
Microbacterium sp. MYb43 [PCPI]
15431
15357
-
Lys
TTT
[ENA]
¡û
>W1911567171
PCPJ01000023
Actinomycetota
Microbacterium sp. MYb40 [PCPJ]
44115
44189
+
Lys
TTT
[ENA]
¡û
>W1911567264
PCPL01000019
Actinomycetota
Microbacterium sp. MYb32 [PCPL]
15439
15365
-
Lys
TTT
[ENA]
¡û
>W1911567537
PCPQ01000021
Actinomycetota
Microbacterium sp. MYb24 [PCPQ]
15390
15316
-
Lys
TTT
[ENA]
¡û
>W1911594719
PNFU01000003
Actinomycetota
Microbacterium sp. UMB0228 [PNFU]
299718
299644
-
Lys
TTT
[ENA]
¡û
>W1911681957
QKLB01000007
Actinomycetota
Curtobacterium sp. MCPF17_046 [QKLB]
126981
127055
+
Lys
TTT
[ENA]
¡û
>W1810058187
PDJG01000001
Actinomycetota
Sanguibacter antarcticus DSM 18966 [PDJG]
3292933
3292859
-
Lys
TTT
[ENA]
¡û
>W1810538349
QDFT01000012
Actinomycetota
Microbacterium testaceum TPD7010 [QDFT]
41865
41790
-
Lys
TTT
[ENA]
¡û
>W1810724662
QOAY01000110
Actinomycetota
Microbacterium sp. H6 [QOAY]
9934
9860
-
Lys
TTT
[ENA]
¡û
>W1810869742
QUAB01000039
Actinomycetota
Microbacterium bovistercoris NEAU-LLE [QUAB]
156629
156555
-
Lys
TTT
[ENA]
¡û
>C151093243
CP012299
Actinomycetota
Microbacterium sp. CGR1 [CP012299]
1636256
1636331
+
Lys
TTT
-
¡û
>W10100681
ABUN01000013
Actinomycetota
Sanguibacter keddieii DSM 10542 [ABUN]
34730
34655
-
Lys
TTT
[ENA]
¡û
>W1510063972
CDAR01000008
Actinomycetota
Microbacterium gorillae G3 [CDAR]
53544
53469
-
Lys
TTT
[ENA]
¡û
>W1510085867
CDWI01000002
Actinomycetota
Microbacterium sp. 3J1 [CDWI]
77734
77809
+
Lys
TTT
[ENA]
¡û
>C10111729
CP001819
Actinomycetota
Sanguibacter keddieii DSM 10542 [CP001819]
3776252
3776327
+
Lys
TTT
[Ensembl]
¡û
>W11100681
ABUN01000013
Actinomycetota
Sanguibacter keddieii DSM 10542 [ABUN]
34730
34655
-
Lys
TTT
[ENA]
¡û
>W1511509278
JXQX01000014
Actinomycetota
Microbacterium sp. MEJ108Y [JXQX]
9645
9570
-
Lys
TTT
[ENA]
¡û
>W1511528712
JYIU01000042
Actinomycetota
Microbacterium foliorum DSM 12966 [JYIU]
96211
96136
-
Lys
TTT
[ENA]
¡û
>W1511528741
JYIV01000014
Actinomycetota
Microbacterium oxydans BEL163 [JYIV]
79787
79712
-
Lys
TTT
[ENA]
¡û
>W1511528799
JYIW01000025
Actinomycetota
Microbacterium oxydans BEL4b [JYIW]
71884
71809
-
Lys
TTT
[ENA]
¡û
>W1511588850
LBCR01000015
Actinomycetota
Microbacterium sp. Ag1 [LBCR]
16003
15928
-
Lys
TTT
[ENA]
¡û
>C161061350
CP013859
Actinomycetota
Microbacterium sp. XT11 [CP013859]
3466187
3466262
+
Lys
TTT
[Ensembl]
¡û
>C161070803
CP014313
Actinomycetota
Microbacterium sp. PAMC 28756 HSR44 [CP014313]
354066
354141
+
Lys
TTT
[Ensembl]
¡û
>W1610068393
BCRH01000106
Actinomycetota
Microbacterium paraoxydans NBRC 103076 [BCRH]
3636
3711
+
Lys
TTT
[ENA]
¡û
>W1610068985
BCRT01000001
Actinomycetota
Sanguibacter suarezii NBRC 16159 [BCRT]
33892
33967
+
Lys
TTT
[ENA]
¡û
>W1610590727
LDRQ01000025
Actinomycetota
Microbacterium oxydans [LDRQ]
4253
4328
+
Lys
TTT
[ENA]
¡û
>W1610722577
LMCS01000002
Actinomycetota
Microbacterium sp. Root322 [LMCS]
450130
450205
+
Lys
TTT
[ENA]
¡û
>W1610726295
LMFN01000001
Actinomycetota
Microbacterium sp. Root1433D1 [LMFN]
443547
443622
+
Lys
TTT
[ENA]
¡û
>W1610726557
LMFR01000026
Actinomycetota
Microbacterium sp. Root53 [LMFR]
56724
56651
-
Lys
TTT
[ENA]
¡û
>W1610726895
LMFY01000002
Actinomycetota
Microbacterium sp. Root553 [LMFY]
242314
242239
-
Lys
TTT
[ENA]
¡û
>W1610731213
LMJK01000003
Actinomycetota
Microbacterium sp. Root280D1 [LMJK]
554410
554335
-
Lys
TTT
[ENA]
¡û
>W1610737465
LMOD01000003
Actinomycetota
Microbacterium sp. Leaf320 [LMOD]
332961
333036
+
Lys
TTT
[ENA]
¡û
>W1610738285
LMOU01000002
Actinomycetota
Microbacterium sp. Leaf159 [LMOU]
295888
295963
+
Lys
TTT
[ENA]
¡û
>W1610738344
LMOW01000001
Actinomycetota
Microbacterium sp. Leaf161 [LMOW]
300525
300600
+
Lys
TTT
[ENA]
¡û
>W1610738535
LMPA01000002
Actinomycetota
Plantibacter sp. Leaf171 [LMPA]
1117543
1117618
+
Lys
TTT
[ENA]
¡û
>W1610741194
LMRH01000001
Actinomycetota
Sanguibacter sp. Leaf3 [LMRH]
390942
390867
-
Lys
TTT
[ENA]
¡û
>W1610803788
LOSO01000018
Actinomycetota
Microbacterium sp. CH1 [LOSO]
96894
96819
-
Lys
TTT
[ENA]
¡û
>W1610914118
LSJW01000149
Actinomycetota
Microbacterium sp. CCH5-D1 [LSJW]
64195
64120
-
Lys
TTT
[ENA]
¡û
>W1610981924
LWCT01000048
Actinomycetota
Plantibacter sp. H53 [LWCT]
19321
19396
+
Lys
TTT
[ENA]
¡û
>W1610981965
LWCU01000034
Actinomycetota
Microbacterium sp. H83 [LWCU]
154573
154498
-
Lys
TTT
[ENA]
¡û
>W1710065766
BCRH01000106
Actinomycetota
Microbacterium paraoxydans NBRC 103076 [BCRH]
3636
3711
+
Lys
TTT
[ENA]
¡û
>W1710066358
BCRT01000001
Actinomycetota
Sanguibacter suarezii NBRC 16159 [BCRT]
33892
33967
+
Lys
TTT
[ENA]
¡û
>W1710510859
FMYH01000001
Actinomycetota
Sanguibacter gelidistatuariae ISLP-3 [FMYH]
854913
854838
-
Lys
TTT
[ENA]
¡û
>W1710561229
FONZ01000003
Actinomycetota
Flavimobilis marinus [FONZ]
375961
376036
+
Lys
TTT
[ENA]
¡û
>W1710710007
LDRQ01000025
Actinomycetota
Microbacterium oxydans [LDRQ]
4253
4328
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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