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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237547 (124 seq.)
>W1710860119
LMCP01000048
Alphaproteobacteria
Mesorhizobium sp. Root102 [LMCP]
264156
264081
-
Lys
CTT
[ENA]
¡û
>W1710866546
LMHO01000003
Alphaproteobacteria
Mesorhizobium sp. Root695 [LMHO]
223313
223388
+
Lys
CTT
[ENA]
¡û
>W1710866613
LMHP01000020
Alphaproteobacteria
Mesorhizobium sp. Root172 [LMHP]
434155
434080
-
Lys
CTT
[ENA]
¡û
>W1711257079
LYTJ01000001
Alphaproteobacteria
Mesorhizobium loti [LYTJ]
737117
737192
+
Lys
CTT
[ENA]
¡û
>W1711257163
LYTK01000020
Alphaproteobacteria
Mesorhizobium loti [LYTK]
169341
169416
+
Lys
CTT
[ENA]
¡û
>W1711257206
LYTL01000022
Alphaproteobacteria
Mesorhizobium loti [LYTL]
319025
319100
+
Lys
CTT
[ENA]
¡û
>W1711257347
LYTP01000011
Alphaproteobacteria
Mesorhizobium sp. AA23 [LYTP]
78542
78617
+
Lys
CTT
[ENA]
¡û
>W1711286694
LZTH01000048
Alphaproteobacteria
Mesorhizobium loti [LZTH]
176558
176483
-
Lys
CTT
[ENA]
¡û
>W1711286710
LZTI01000003
Alphaproteobacteria
Mesorhizobium loti [LZTI]
47955
48030
+
Lys
CTT
[ENA]
¡û
>W1711286796
LZTJ01000035
Alphaproteobacteria
Mesorhizobium loti [LZTJ]
176558
176483
-
Lys
CTT
[ENA]
¡û
>W1711286829
LZTK01000009
Alphaproteobacteria
Mesorhizobium loti [LZTK]
924892
924967
+
Lys
CTT
[ENA]
¡û
>W1711286882
LZTL01000032
Alphaproteobacteria
Mesorhizobium loti [LZTL]
176558
176483
-
Lys
CTT
[ENA]
¡û
>W1711361605
MDLH01000001
Alphaproteobacteria
Mesorhizobium sp. SEMIA 3007 [MDLH]
5209610
5209535
-
Lys
CTT
[ENA]
¡û
>C171037590
CP015318
Alphaproteobacteria
Mesorhizobium amorphae CCNWGS0123 [CP015318]
4731430
4731355
-
Lys
CTT
-
¡û
>C171115455
CP021070
Alphaproteobacteria
Mesorhizobium sp. WSM1497 [CP021070]
3644291
3644366
+
Lys
CTT
-
¡û
>W131163251
AQZP01000003
Alphaproteobacteria
Mesorhizobium loti NZP2037 [AQZP]
753950
753875
-
Lys
CTT
[ENA]
¡û
>W131226561
AUEL01000016
Alphaproteobacteria
Mesorhizobium sp. URHA0056 [AUEL]
76596
76671
+
Lys
CTT
[ENA]
¡û
>W131242075
CAAF010000066
Alphaproteobacteria
Mesorhizobium sp. STM 4661 [CAAF]
5008
4933
-
Lys
CTT
[ENA]
¡û
>W131250161
CAUM01000131
Alphaproteobacteria
Mesorhizobium metallidurans STM 2683 [CAUM]
8759
8684
-
Lys
CTT
[ENA]
¡û
>C013726
BA000012
Alphaproteobacteria
Mesorhizobium japonicum MAFF 303099 [BA000012]
1166424
1166349
-
Lys
CTT
[Ensembl]
¡û
>W141149640
AWZS01000001
Alphaproteobacteria
Mesorhizobium ciceri CMG6 [AWZS]
169100
169025
-
Lys
CTT
[ENA]
¡û
>W141150154
AXAE01000005
Alphaproteobacteria
Mesorhizobium erdmanii USDA 3471 [AXAE]
338519
338594
+
Lys
CTT
[ENA]
¡û
>W141150505
AXAL01000002
Alphaproteobacteria
Mesorhizobium loti CJ3sym [AXAL]
415198
415273
+
Lys
CTT
[ENA]
¡û
>W141197470
AYVK01000004
Alphaproteobacteria
Mesorhizobium sp. LSJC285A00 [AYVK]
223890
223965
+
Lys
CTT
[ENA]
¡û
>W141197525
AYVL01000008
Alphaproteobacteria
Mesorhizobium sp. LSJC280B00 [AYVL]
267381
267306
-
Lys
CTT
[ENA]
¡û
>W141197593
AYVM01000023
Alphaproteobacteria
Mesorhizobium sp. LSJC277A00 [AYVM]
39524
39599
+
Lys
CTT
[ENA]
¡û
>W141197646
AYVN01000018
Alphaproteobacteria
Mesorhizobium sp. LSJC269B00 [AYVN]
105815
105740
-
Lys
CTT
[ENA]
¡û
>W141197649
AYVO01000001
Alphaproteobacteria
Mesorhizobium sp. LSJC268A00 [AYVO]
342896
342971
+
Lys
CTT
[ENA]
¡û
>W141197733
AYVP01000032
Alphaproteobacteria
Mesorhizobium sp. LSJC265A00 [AYVP]
89088
89013
-
Lys
CTT
[ENA]
¡û
>W141197749
AYVQ01000007
Alphaproteobacteria
Mesorhizobium sp. LSJC264A00 [AYVQ]
184384
184309
-
Lys
CTT
[ENA]
¡û
>W141197822
AYVR01000012
Alphaproteobacteria
Mesorhizobium sp. LSJC255A00 [AYVR]
308240
308165
-
Lys
CTT
[ENA]
¡û
>W141197853
AYVS01000003
Alphaproteobacteria
Mesorhizobium sp. LSHC440B00 [AYVS]
81696
81771
+
Lys
CTT
[ENA]
¡û
>W141197907
AYVT01000005
Alphaproteobacteria
Mesorhizobium sp. LSHC440A00 [AYVT]
530330
530255
-
Lys
CTT
[ENA]
¡û
>W141197965
AYVU01000004
Alphaproteobacteria
Mesorhizobium sp. LSHC432A00 [AYVU]
375421
375346
-
Lys
CTT
[ENA]
¡û
>W141198023
AYVV01000017
Alphaproteobacteria
Mesorhizobium sp. LSHC426A00 [AYVV]
17322
17397
+
Lys
CTT
[ENA]
¡û
>W141198072
AYVW01000022
Alphaproteobacteria
Mesorhizobium sp. LSHC424B00 [AYVW]
57742
57667
-
Lys
CTT
[ENA]
¡û
>W141198084
AYVX01000003
Alphaproteobacteria
Mesorhizobium sp. LSHC422A00 [AYVX]
15612
15687
+
Lys
CTT
[ENA]
¡û
>W141198155
AYVY01000019
Alphaproteobacteria
Mesorhizobium sp. LSHC420B00 [AYVY]
55027
54952
-
Lys
CTT
[ENA]
¡û
>W141198209
AYVZ01000017
Alphaproteobacteria
Mesorhizobium sp. LSHC416B00 [AYVZ]
57727
57652
-
Lys
CTT
[ENA]
¡û
>W141198237
AYWA01000004
Alphaproteobacteria
Mesorhizobium sp. LSHC414A00 [AYWA]
442704
442629
-
Lys
CTT
[ENA]
¡û
>W141198301
AYWB01000023
Alphaproteobacteria
Mesorhizobium sp. LSHC412B00 [AYWB]
63978
63903
-
Lys
CTT
[ENA]
¡û
>W141198346
AYWC01000017
Alphaproteobacteria
Mesorhizobium sp. LNJC405B00 [AYWC]
66085
66010
-
Lys
CTT
[ENA]
¡û
>W141198382
AYWD01000004
Alphaproteobacteria
Mesorhizobium sp. LNJC403B00 [AYWD]
343969
343894
-
Lys
CTT
[ENA]
¡û
>W141198432
AYWE01000003
Alphaproteobacteria
Mesorhizobium sp. LNJC399B00 [AYWE]
104609
104534
-
Lys
CTT
[ENA]
¡û
>W141198478
AYWF01000003
Alphaproteobacteria
Mesorhizobium sp. LNJC398B00 [AYWF]
895748
895673
-
Lys
CTT
[ENA]
¡û
>W141198515
AYWG01000005
Alphaproteobacteria
Mesorhizobium sp. LNJC395A00 [AYWG]
548956
548881
-
Lys
CTT
[ENA]
¡û
>W141198557
AYWH01000002
Alphaproteobacteria
Mesorhizobium sp. LNJC394B00 [AYWH]
1604451
1604526
+
Lys
CTT
[ENA]
¡û
>W141198597
AYWI01000002
Alphaproteobacteria
Mesorhizobium sp. LNJC391B00 [AYWI]
384032
383957
-
Lys
CTT
[ENA]
¡û
>W141198650
AYWJ01000003
Alphaproteobacteria
Mesorhizobium sp. LNJC386A00 [AYWJ]
17708
17783
+
Lys
CTT
[ENA]
¡û
>W141198701
AYWK01000006
Alphaproteobacteria
Mesorhizobium sp. LNJC384A00 [AYWK]
17197
17272
+
Lys
CTT
[ENA]
¡û
>W141198745
AYWL01000002
Alphaproteobacteria
Mesorhizobium sp. LNJC380A00 [AYWL]
498816
498741
-
Lys
CTT
[ENA]
¡û
>W141198786
AYWM01000001
Alphaproteobacteria
Mesorhizobium sp. LNJC374B00 [AYWM]
503458
503383
-
Lys
CTT
[ENA]
¡û
>W141198840
AYWN01000003
Alphaproteobacteria
Mesorhizobium sp. LNJC372A00 [AYWN]
503564
503489
-
Lys
CTT
[ENA]
¡û
>W141198874
AYWO01000001
Alphaproteobacteria
Mesorhizobium sp. LNHC252B00 [AYWO]
515712
515787
+
Lys
CTT
[ENA]
¡û
>W141198923
AYWP01000001
Alphaproteobacteria
Mesorhizobium sp. LNHC232B00 [AYWP]
16147
16222
+
Lys
CTT
[ENA]
¡û
>W141198973
AYWQ01000001
Alphaproteobacteria
Mesorhizobium sp. LNHC229A00 [AYWQ]
310545
310620
+
Lys
CTT
[ENA]
¡û
>W141199055
AYWR01000016
Alphaproteobacteria
Mesorhizobium sp. LNHC221B00 [AYWR]
50511
50586
+
Lys
CTT
[ENA]
¡û
>W141199081
AYWS01000004
Alphaproteobacteria
Mesorhizobium sp. LNHC220B00 [AYWS]
206798
206723
-
Lys
CTT
[ENA]
¡û
>W141199119
AYWT01000001
Alphaproteobacteria
Mesorhizobium sp. LNHC209A00 [AYWT]
419600
419525
-
Lys
CTT
[ENA]
¡û
>W141199226
AYWV01000005
Alphaproteobacteria
Mesorhizobium sp. L2C089B000 [AYWV]
781932
781857
-
Lys
CTT
[ENA]
¡û
>W141199265
AYWW01000001
Alphaproteobacteria
Mesorhizobium sp. L2C085B000 [AYWW]
1581539
1581614
+
Lys
CTT
[ENA]
¡û
>W141199337
AYWX01000009
Alphaproteobacteria
Mesorhizobium sp. L2C084A000 [AYWX]
571620
571545
-
Lys
CTT
[ENA]
¡û
>W141199377
AYWY01000006
Alphaproteobacteria
Mesorhizobium sp. L2C067A000 [AYWY]
571710
571635
-
Lys
CTT
[ENA]
¡û
>W141199404
AYWZ01000001
Alphaproteobacteria
Mesorhizobium sp. L2C066B000 [AYWZ]
1373972
1374047
+
Lys
CTT
[ENA]
¡û
>W141199483
AYXA01000011
Alphaproteobacteria
Mesorhizobium sp. L2C054A000 [AYXA]
61502
61577
+
Lys
CTT
[ENA]
¡û
>W141199501
AYXB01000001
Alphaproteobacteria
Mesorhizobium sp. L103C565B0 [AYXB]
491101
491026
-
Lys
CTT
[ENA]
¡û
>W141199584
AYXC01000021
Alphaproteobacteria
Mesorhizobium sp. L103C131B0 [AYXC]
16571
16646
+
Lys
CTT
[ENA]
¡û
>W141199640
AYXD01000027
Alphaproteobacteria
Mesorhizobium sp. L103C120A0 [AYXD]
15481
15556
+
Lys
CTT
[ENA]
¡û
>W141199642
AYXE01000002
Alphaproteobacteria
Mesorhizobium sp. L103C119B0 [AYXE]
15626
15701
+
Lys
CTT
[ENA]
¡û
>W141199709
AYXF01000002
Alphaproteobacteria
Mesorhizobium sp. L103C105A0 [AYXF]
523691
523616
-
Lys
CTT
[ENA]
¡û
>W141200967
AZAM01000002
Alphaproteobacteria
Mesorhizobium japonicum R7A [AZAM]
622549
622474
-
Lys
CTT
[ENA]
¡û
>W141216359
AZUV01000001
Alphaproteobacteria
Mesorhizobium sp. WSM1293 [AZUV]
323636
323561
-
Lys
CTT
[ENA]
¡û
>W141216543
AZUY01000036
Alphaproteobacteria
Mesorhizobium sp. WSM3626 [AZUY]
47485
47410
-
Lys
CTT
[ENA]
¡û
>W141242852
CAIU01000041
Alphaproteobacteria
Pseudaminobacter salicylatoxidans KCT001 [CAIU]
2064
2139
+
Lys
CTT
[ENA]
¡û
>W141275018
JACE01000004
Alphaproteobacteria
Mesorhizobium loti R88b [JACE]
245119
245044
-
Lys
CTT
[ENA]
¡û
>W141278299
JAFG01000003
Alphaproteobacteria
Mesorhizobium ciceri WSM4083 [JAFG]
109034
108959
-
Lys
CTT
[ENA]
¡û
>WENV170711797
LNFM01007467
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
825
750
-
Lys
CTT
[ENA]
¢þ
>W141564199
JIAO01000016
Alphaproteobacteria
Mesorhizobium sp. URHB0007 [JIAO]
15682
15757
+
Lys
CTT
[ENA]
¡û
>W141564255
JIAP01000013
Alphaproteobacteria
Mesorhizobium sp. URHC0008 [JIAP]
161005
161080
+
Lys
CTT
[ENA]
¡û
>W1910550157
FZQR01000010
Alphaproteobacteria
Mesorhizobium carmichaelinearum ICMP 18942 [FZQR]
294617
294692
+
Lys
CTT
[ENA]
¡û
>W1910840227
MZXV01000062
Alphaproteobacteria
Mesorhizobium kowhaii Ach-343 [MZXV]
393315
393240
-
Lys
CTT
[ENA]
¡û
>W1910840299
MZXX01000009
Alphaproteobacteria
Mesorhizobium erdmanii Opo-242 [MZXX]
79483
79408
-
Lys
CTT
[ENA]
¡û
>W1911084316
NNRI01000013
Alphaproteobacteria
Mesorhizobium sophorae ICMP 19535 [NNRI]
182673
182748
+
Lys
CTT
[ENA]
¡û
>W1911242188
NSFO01000003
Alphaproteobacteria
Mesorhizobium loti R7ANSxCC1192 [NSFO]
176558
176483
-
Lys
CTT
[ENA]
¡û
>W1911242271
NSFP01000013
Alphaproteobacteria
Mesorhizobium loti R7ANSxAA22 [NSFP]
176508
176433
-
Lys
CTT
[ENA]
¡û
>W1911242318
NSFQ01000012
Alphaproteobacteria
Mesorhizobium loti R7ANSx3876 [NSFQ]
16934
17009
+
Lys
CTT
[ENA]
¡û
>W1911242358
NSFR01000013
Alphaproteobacteria
Mesorhizobium loti R7ANSx3859 [NSFR]
14525
14600
+
Lys
CTT
[ENA]
¡û
>W1911242419
NSFS01000012
Alphaproteobacteria
Mesorhizobium loti R7ANSx1497 [NSFS]
14525
14600
+
Lys
CTT
[ENA]
¡û
>W1911242481
NSFU01000004
Alphaproteobacteria
Mesorhizobium sp. WSM4312 [NSFU]
19061
19136
+
Lys
CTT
[ENA]
¡û
>W1911242526
NSFV01000001
Alphaproteobacteria
Mesorhizobium sp. WSM4311 [NSFV]
385920
385995
+
Lys
CTT
[ENA]
¡û
>W1911242610
NSFW01000011
Alphaproteobacteria
Mesorhizobium sp. WSM4308 [NSFW]
47454
47529
+
Lys
CTT
[ENA]
¡û
>W1911242659
NSFX01000006
Alphaproteobacteria
Mesorhizobium sp. WSM4304 [NSFX]
387810
387735
-
Lys
CTT
[ENA]
¡û
>W1911405031
NWQG01000142
Alphaproteobacteria
Mesorhizobium sanjuanii BSA136 [NWQG]
985
910
-
Lys
CTT
[ENA]
¡û
>W1911682371
QKOD01000001
Alphaproteobacteria
Mesorhizobium japonicum Opo-235 [QKOD]
1524385
1524460
+
Lys
CTT
[ENA]
¡û
>W1911824677
QZWZ01000002
Alphaproteobacteria
Mesorhizobium waimense ICMP19557 [QZWZ]
311551
311626
+
Lys
CTT
[ENA]
¡û
>W1911824723
QZXA01000002
Alphaproteobacteria
Mesorhizobium jarvisii LMG 28313 [QZXA]
319007
319082
+
Lys
CTT
[ENA]
¡û
>W1810444858
PZJX01000029
Alphaproteobacteria
Mesorhizobium helmanticense CSLC115N [PZJX]
221575
221500
-
Lys
CTT
[ENA]
¡û
>W1810595968
QGGH01000006
Alphaproteobacteria
Mesorhizobium loti DSM 2626 [QGGH]
124613
124538
-
Lys
CTT
[ENA]
¡û
>W1810784438
QRAR01000013
Alphaproteobacteria
Mesorhizobium sp. AP09 [QRAR]
400796
400871
+
Lys
CTT
[ENA]
¡û
>W10106975
ACZA01000012
Alphaproteobacteria
Mesorhizobium opportunistum WSM2075 [ACZA]
145468
145543
+
Lys
CTT
[ENA]
¡û
>W11109264
ACZA01000012
Alphaproteobacteria
Mesorhizobium opportunistum WSM2075 [ACZA]
145468
145543
+
Lys
CTT
[ENA]
¡û
>C11114108
CP002447
Alphaproteobacteria
Mesorhizobium ciceri biovar biserrulae WSM1271 [CP002447]
3412322
3412397
+
Lys
CTT
[Ensembl]
¡û
>C11114837
CP002279
Alphaproteobacteria
Mesorhizobium opportunistum WSM2075 [CP002279]
3774878
3774953
+
Lys
CTT
[Ensembl]
¡û
>W11181230
AGIX01000001
Alphaproteobacteria
Mesorhizobium australicum WSM2073 [AGIX]
623977
623902
-
Lys
CTT
[ENA]
¡û
>C161003996
CP006581
Alphaproteobacteria
Mesorhizobium huakuii 7653R [CP006581]
2985803
2985728
-
Lys
CTT
[Ensembl]
¡û
>C161082374
CP015062
Alphaproteobacteria
Mesorhizobium ciceri CC1192 [CP015062]
2158145
2158070
-
Lys
CTT
[Ensembl]
¡û
>C161082420
CP015064
Alphaproteobacteria
Mesorhizobium ciceri biovar biserrulae WSM1284 [CP015064]
3661498
3661423
-
Lys
CTT
-
¡û
>C161093979
CP016079
Alphaproteobacteria
Mesorhizobium loti NZP2037 [CP016079]
3969138
3969213
+
Lys
CTT
-
¡û
>W121018079
AGSN01000181
Alphaproteobacteria
Mesorhizobium amorphae CCNWGS0123 [AGSN]
140196
140271
+
Lys
CTT
[ENA]
¡û
>C131003383
CP003358
Alphaproteobacteria
Mesorhizobium australicum WSM2073 [CP003358]
3591729
3591804
+
Lys
CTT
[Ensembl]
¡û
>W1610722465
LMCP01000048
Alphaproteobacteria
Mesorhizobium sp. Root102 [LMCP]
264156
264081
-
Lys
CTT
[ENA]
¡û
>W1610728892
LMHO01000003
Alphaproteobacteria
Mesorhizobium sp. Root695 [LMHO]
223313
223388
+
Lys
CTT
[ENA]
¡û
>W1610728959
LMHP01000020
Alphaproteobacteria
Mesorhizobium sp. Root172 [LMHP]
434155
434080
-
Lys
CTT
[ENA]
¡û
>W1611020055
LYTJ01000001
Alphaproteobacteria
Mesorhizobium loti [LYTJ]
737117
737192
+
Lys
CTT
[ENA]
¡û
>W1611020139
LYTK01000020
Alphaproteobacteria
Mesorhizobium loti [LYTK]
169341
169416
+
Lys
CTT
[ENA]
¡û
>W1611020182
LYTL01000022
Alphaproteobacteria
Mesorhizobium loti [LYTL]
319025
319100
+
Lys
CTT
[ENA]
¡û
>W1611020265
LYTN01000012
Alphaproteobacteria
Mesorhizobium sp. WSM1497 [LYTN]
337504
337429
-
Lys
CTT
[ENA]
¡û
>W1611020369
LYTP01000011
Alphaproteobacteria
Mesorhizobium sp. AA23 [LYTP]
78542
78617
+
Lys
CTT
[ENA]
¡û
>W1611044255
LZTH01000048
Alphaproteobacteria
Mesorhizobium loti [LZTH]
176558
176483
-
Lys
CTT
[ENA]
¡û
>W1611044271
LZTI01000003
Alphaproteobacteria
Mesorhizobium loti [LZTI]
47955
48030
+
Lys
CTT
[ENA]
¡û
>W1611044357
LZTJ01000035
Alphaproteobacteria
Mesorhizobium loti [LZTJ]
176558
176483
-
Lys
CTT
[ENA]
¡û
>W1611044390
LZTK01000009
Alphaproteobacteria
Mesorhizobium loti [LZTK]
924892
924967
+
Lys
CTT
[ENA]
¡û
>W1611044443
LZTL01000032
Alphaproteobacteria
Mesorhizobium loti [LZTL]
176558
176483
-
Lys
CTT
[ENA]
¡û
>W1710509804
FMXM01000002
Alphaproteobacteria
Mesorhizobium qingshengii [FMXM]
720866
720791
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
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Direction
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Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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