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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237553 (24 seq.)
>WENV180329199
OBKV01000395
[OBKV] human gut metagenome; human gut
27690
27766
+
Arg
CCT
[ENA]
¡û
>WENV180545654
OCIU01000019
[OCIU] human gut metagenome; human gut
63781
63857
+
Arg
CCT
[ENA]
¡û
>WENV180567297
OCLL01020044
[OCLL] human gut metagenome; human gut
172
248
+
Arg
CCT
[ENA]
¡û
>WENV182094804
OHHK01008981
[OHHK] human gut metagenome; feces
786
710
-
Arg
CCT
[ENA]
¡û
>WENV182319123
OHYG01002885
[OHYG] human gut metagenome; feces
1794
1718
-
Arg
CCT
[ENA]
¡û
>WENV182343290
OIAK01002498
[OIAK] human gut metagenome; feces
3136
3212
+
Arg
CCT
[ENA]
¡û
>WENV182351166
OIBG01007803
[OIBG] human gut metagenome; feces
410
334
-
Arg
CCT
[ENA]
¡û
>WENV182608206
OJJV01000031
[OJJV] metagenome; faeces
28092
28168
+
Arg
CCT
[ENA]
¡û
>WENV182663160
OJMO01003153
[OJMO] human gut metagenome; feces
706
630
-
Arg
CCT
[ENA]
¡û
>WENV182933006
OKUV01000553
[OKUV] human gut metagenome; feces
497
573
+
Arg
CCT
[ENA]
¡û
>WENV183044036
OLGE01000287
[OLGE] human gut metagenome; faeces
27935
28011
+
Arg
CCT
[ENA]
¡û
>WENV183302870
OLSQ01000123
[OLSQ] human gut metagenome; faeces
17550
17626
+
Arg
CCT
[ENA]
¡û
>WENV183337574
OLWI01042656
[OLWI] human gut metagenome; feces
141
217
+
Arg
CCT
[ENA]
¡û
>WENV183340036
OLWL01002078
[OLWL] human gut metagenome; feces
1529
1605
+
Arg
CCT
[ENA]
¡û
>WENV183384086
OLYN01000743
[OLYN] human gut metagenome; feces
5943
5867
-
Arg
CCT
[ENA]
¡û
>WENV183633566
OOIG01001026
[OOIG] human gut metagenome; human gut
10040
10116
+
Arg
CCT
[ENA]
¡û
>WENV183639936
OQVL01000363
[OQVL] human gut metagenome; human gut
9137
9213
+
Arg
CCT
[ENA]
¡û
>WENV183642999
OQVO01000466
[OQVO] human gut metagenome; human gut
1630
1554
-
Arg
CCT
[ENA]
¡û
>WENV183647445
OQVS01000720
[OQVS] human gut metagenome; human gut
12376
12300
-
Arg
CCT
[ENA]
¡û
>WENV183656269
OQWE01013772
[OQWE] human gut metagenome; human gut
1284
1208
-
Arg
CCT
[ENA]
¡û
>WENV170056959
CDZG01021438
[CDZG] gut metagenome; human stools
40778
40702
-
Arg
CCT
[ENA]
¡û
>WENV170060267
CDZH01081318
[CDZH] gut metagenome; human stools
34715
34639
-
Arg
CCT
[ENA]
¡û
>WENV170061391
CDZI01046655
[CDZI] gut metagenome; human stools
84065
84141
+
Arg
CCT
[ENA]
¡û
>W2011483292
RQYD01000024
Bacillota
Clostridiales bacterium COT073_COT-073 [RQYD]
41807
41734
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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