This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237559 (84 seq.)
>W1710860833
LMDE01000012
Actinomycetota
Nocardioides sp. Root122 [LMDE]
146241
146166
-
His
GTG
[ENA]
¡û
>W1710861712
LMDV01000008
Actinomycetota
Nocardioides sp. Root1257 [LMDV]
1218661
1218586
-
His
GTG
[ENA]
¡û
>W1710863687
LMFI01000001
Actinomycetota
Nocardioides sp. Root140 [LMFI]
154406
154331
-
His
GTG
[ENA]
¡û
>W1710864934
LMGG01000007
Actinomycetota
Nocardioides sp. Root151 [LMGG]
894925
894850
-
His
GTG
[ENA]
¡û
>W1710865612
LMGV01000001
Actinomycetota
Nocardioides sp. Root614 [LMGV]
1188321
1188396
+
His
GTG
[ENA]
¡û
>W1710866306
LMHJ01000001
Actinomycetota
Nocardioides sp. Root682 [LMHJ]
1234909
1234984
+
His
GTG
[ENA]
¡û
>W1710867139
LMIA01000009
Actinomycetota
Nocardioides sp. Root190 [LMIA]
253924
253849
-
His
GTG
[ENA]
¡û
>W1710867732
LMIN01000008
Actinomycetota
Nocardioides sp. Root224 [LMIN]
1218429
1218354
-
His
GTG
[ENA]
¡û
>W1710867844
LMIP01000015
Actinomycetota
Nocardioides sp. Root79 [LMIP]
167888
167963
+
His
GTG
[ENA]
¡û
>W1710868032
LMIT01000013
Actinomycetota
Nocardioides sp. Root240 [LMIT]
167677
167752
+
His
GTG
[ENA]
¡û
>W1710878781
LMRF01000006
Actinomycetota
Marmoricola sp. Leaf446 [LMRF]
559686
559761
+
His
GTG
[ENA]
¡û
>W1710880675
LMSM01000009
Actinomycetota
Nocardioides sp. Soil774 [LMSM]
258225
258150
-
His
GTG
[ENA]
¡û
>W1710880681
LMSN01000001
Actinomycetota
Nocardioides sp. Soil777 [LMSN]
546122
546197
+
His
GTG
[ENA]
¡û
>W1710880889
LMSQ01000017
Actinomycetota
Nocardioides sp. Soil796 [LMSQ]
6394
6319
-
His
GTG
[ENA]
¡û
>W1710880926
LMSR01000014
Actinomycetota
Nocardioides sp. Soil797 [LMSR]
66980
66905
-
His
GTG
[ENA]
¡û
>W1710881050
LMSU01000001
Actinomycetota
Nocardioides sp. Soil805 [LMSU]
792785
792859
+
His
GTG
[ENA]
¡û
>W131190780
ASEP01000035
Actinomycetota
Nocardioides sp. CF8 [ASEP]
10769
10694
-
His
GTG
[ENA]
¡û
>W131226727
AUEP01000005
Actinomycetota
Marmoricola sp. URHB0036 [AUEP]
388144
388219
+
His
GTG
[ENA]
¡û
>W131227887
AUFN01000010
Actinomycetota
Nocardioides alkalitolerans DSM 16699 [AUFN]
1012634
1012709
+
His
GTG
[ENA]
¡û
>w012470
AAMN01000001
Actinomycetota
Janibacter sp. HTCC2649 [AAMN]
122067
122144
+
His
GTG
[ENA]
¡û
>WENV180000059
CZKB01000004
[CZKB] metagenome; liquid mineral medium
22648
22722
+
His
GTG
[ENA]
¢þ
>WENV180019327
FTBU01001157
[FTBU] metagenome; soil
2334
2261
-
His
GTG
[ENA]
¢þ
>WENV180344583
OBLL01050272
[OBLL] soil metagenome; soil
377
302
-
His
GTG
[ENA]
¢þ
>WENV180693125
OCZS011020274
[OCZS] soil metagenome; soil
7
82
+
His
GTG
[ENA]
¢þ
>WENV181223322
OFDC01006592
[OFDC] hot springs metagenome; Water
3060
3134
+
His
GTG
[ENA]
¢þ
>WENV182584975
OJHG01046972
[OJHG] seawater metagenome; Sea water
431
503
+
His
GTG
[ENA]
¢þ
>W141282904
JAJB01000033
Actinomycetota
Brevibacterium sp. VCM10 [JAJB]
30556
30481
-
His
GTG
[ENA]
¡û
>WENV183511370
OMJG01000107
[OMJG] food metagenome; Cotija cheese
14758
14684
-
His
GTG
[ENA]
¢þ
>WENV170176456
CEOS01079164
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
87
162
+
His
GTG
[ENA]
¢þ
>C191031918
CP025331
Actinomycetota
Brevibacterium aurantiacum SMQ-1418 [CP025331]
2914946
2914872
-
His
GTG
-
¡û
>C191032061
CP025334
Actinomycetota
Brevibacterium aurantiacum SMQ-1420 [CP025334]
3071646
3071572
-
His
GTG
-
¡û
>C191158851
CP038267
Actinomycetota
Nocardioides euryhalodurans MMS17-SY117 [CP038267]
3618298
3618223
-
His
GTG
-
¡û
>C191181615
CP040695
Actinomycetota
Nocardioides sp. S-1144 [CP040695]
1013264
1013189
-
His
GTG
-
¡û
>C191186983
CP041146
Actinomycetota
Nocardioides humi DCY24 [CP041146]
1109477
1109551
+
His
GTG
-
¡û
>W141564317
JIAR01000007
Actinomycetota
Nocardioides sp. URHA0020 [JIAR]
55345
55420
+
His
GTG
[ENA]
¡û
>W1910231908
FPEG01000002
Actinomycetota
Agrococcus sp. Marseille-P2731 [FPEG]
663207
663280
+
His
GTG
[ENA]
¡û
>W1910331221
FSLI01000034
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 1079 [FSLI]
62137
62063
-
His
GTG
[ENA]
¡û
>W1910373881
FUHU01000038
Actinomycetota
Agrococcus casei LMG 22410 [FUHU]
153358
153433
+
His
GTG
[ENA]
¡û
>W1910377656
FUKO01000034
Actinomycetota
Microbacterium esteraromaticum B Mb 05.01 [FUKO]
19363
19438
+
His
GTG
[ENA]
¡û
>W1910500312
FXZE01000002
Actinomycetota
Brevibacterium antiquum P10 [FXZE]
229719
229793
+
His
GTG
[ENA]
¡û
>W1910500543
FXZI01000025
Actinomycetota
Brevibacterium aurantiacum [FXZI]
3581
3504
-
His
GTG
[ENA]
¡û
>W1911672131
QGDD01000009
Actinomycetota
Nocardioides silvaticus CCTCC AB 2018079 [QGDD]
71391
71316
-
His
GTG
[ENA]
¡û
>W1911696922
QNGF01000003
Actinomycetota
Brevibacterium casei S51 [QNGF]
2227
2301
+
His
GTG
[ENA]
¡û
>W1911768141
QXGH01000012
Actinomycetota
Nocardioides immobilis CCTCC AB 2017083 [QXGH]
221505
221430
-
His
GTG
[ENA]
¡û
>W1911798410
QYRP01000002
Actinomycetota
Nocardioides cavernaquae K1W22B-1 [QYRP]
389786
389861
+
His
GTG
[ENA]
¡û
>W1810157278
PJBV01000010
Actinomycetota
Nocardioides alpinus DSM 23325 [PJBV]
494247
494322
+
His
GTG
[ENA]
¡û
>W1810427514
PYXZ01000004
Actinomycetota
Nocardioides currus IB-3 [PYXZ]
202561
202636
+
His
GTG
[ENA]
¡û
>W1810462610
PZYX01000002
Actinomycetota
Nocardioides allogilvus KCTC 49020 [PZYX]
558657
558732
+
His
GTG
[ENA]
¡û
>W1810462682
PZYY01000011
Actinomycetota
Nocardioides terrigena KCTC 19217 [PZYY]
127368
127441
+
His
GTG
[ENA]
¡û
>W1810462705
PZYZ01000001
Actinomycetota
Nocardioides sediminis KCTC 19271 [PZYZ]
684736
684661
-
His
GTG
[ENA]
¡û
>W1810539925
QDGZ01000010
Actinomycetota
Nocardioides gansuensis WSJ-1 [QDGZ]
34639
34714
+
His
GTG
[ENA]
¡û
>W1810626206
QHKY01000001
Actinomycetota
Nocardioides gilvus XZ17 [QHKY]
505612
505687
+
His
GTG
[ENA]
¡û
>SRA1015811
SRR023846.208315
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
206
131
-
His
GTG
[SRA]
>SRA1016456
SRR023846.507340
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
205
130
-
His
GTG
[SRA]
>C151077123
CP011112
Actinomycetota
Luteipulveratus mongoliensis MN07-A0370 [CP011112]
3932405
3932480
+
His
GTG
-
¡û
>C161082885
CP015079
Actinomycetota
Nocardioides dokdonensis FR1436 [CP015079]
2440745
2440670
-
His
GTG
[Ensembl]
¡û
>W1610050516
BBFY01000214
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BBFY]
2694
2769
+
His
GTG
[ENA]
¡û
>W1610068462
BCRJ01000001
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BCRJ]
38715
38790
+
His
GTG
[ENA]
¡û
>W1610723179
LMDE01000012
Actinomycetota
Nocardioides sp. Root122 [LMDE]
146241
146166
-
His
GTG
[ENA]
¡û
>W1610724058
LMDV01000008
Actinomycetota
Nocardioides sp. Root1257 [LMDV]
1218661
1218586
-
His
GTG
[ENA]
¡û
>W1610726033
LMFI01000001
Actinomycetota
Nocardioides sp. Root140 [LMFI]
154406
154331
-
His
GTG
[ENA]
¡û
>W1610727280
LMGG01000007
Actinomycetota
Nocardioides sp. Root151 [LMGG]
894925
894850
-
His
GTG
[ENA]
¡û
>W1610727958
LMGV01000001
Actinomycetota
Nocardioides sp. Root614 [LMGV]
1188321
1188396
+
His
GTG
[ENA]
¡û
>W1610728652
LMHJ01000001
Actinomycetota
Nocardioides sp. Root682 [LMHJ]
1234909
1234984
+
His
GTG
[ENA]
¡û
>W1610729485
LMIA01000009
Actinomycetota
Nocardioides sp. Root190 [LMIA]
253924
253849
-
His
GTG
[ENA]
¡û
>W1610730078
LMIN01000008
Actinomycetota
Nocardioides sp. Root224 [LMIN]
1218429
1218354
-
His
GTG
[ENA]
¡û
>W1610730190
LMIP01000015
Actinomycetota
Nocardioides sp. Root79 [LMIP]
167888
167963
+
His
GTG
[ENA]
¡û
>W1610730378
LMIT01000013
Actinomycetota
Nocardioides sp. Root240 [LMIT]
167677
167752
+
His
GTG
[ENA]
¡û
>W1610741127
LMRF01000006
Actinomycetota
Marmoricola sp. Leaf446 [LMRF]
559686
559761
+
His
GTG
[ENA]
¡û
>W1610743021
LMSM01000009
Actinomycetota
Nocardioides sp. Soil774 [LMSM]
258225
258150
-
His
GTG
[ENA]
¡û
>W1610743027
LMSN01000001
Actinomycetota
Nocardioides sp. Soil777 [LMSN]
546122
546197
+
His
GTG
[ENA]
¡û
>W1610743235
LMSQ01000017
Actinomycetota
Nocardioides sp. Soil796 [LMSQ]
6394
6319
-
His
GTG
[ENA]
¡û
>W1610743272
LMSR01000014
Actinomycetota
Nocardioides sp. Soil797 [LMSR]
66980
66905
-
His
GTG
[ENA]
¡û
>W1610743396
LMSU01000001
Actinomycetota
Nocardioides sp. Soil805 [LMSU]
792785
792859
+
His
GTG
[ENA]
¡û
>W1710046915
BBFY01000214
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BBFY]
2694
2769
+
His
GTG
[ENA]
¡û
>W1710065835
BCRJ01000001
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BCRJ]
38715
38790
+
His
GTG
[ENA]
¡û
>W1710083222
BDJE01000062
Actinomycetota
Nocardioides sp. PD653-B2 [BDJE]
28779
28704
-
His
GTG
[ENA]
¡û
>W1710083334
BDJG01000036
Actinomycetota
Nocardioides sp. PD653 [BDJG]
33558
33633
+
His
GTG
[ENA]
¡û
>W1710523592
FNIC01000009
Actinomycetota
Nocardioides szechwanensis [FNIC]
117208
117133
-
His
GTG
[ENA]
¡û
>W1710534268
FNRT01000002
Actinomycetota
Nocardioides exalbidus [FNRT]
96910
96985
+
His
GTG
[ENA]
¡û
>W1710556280
FOKC01000002
Actinomycetota
Nocardioides alpinus [FOKC]
494585
494660
+
His
GTG
[ENA]
¡û
>W1710564143
FOQG01000014
Actinomycetota
Nocardioides psychrotolerans [FOQG]
57161
57236
+
His
GTG
[ENA]
¡û
>W1710569406
FOUK01000002
Actinomycetota
Pimelobacter simplex [FOUK]
870487
870562
+
His
GTG
[ENA]
¡û
>W1710575848
FOZN01000003
Actinomycetota
Agrococcus baldri [FOZN]
628141
628066
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK