This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237574 (122 seq.)
>W1710863840
LMFL01000008
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
67572
67497
-
Thr
TGT
[ENA]
¡û
>W1710863859
LMFL01000024
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
16611
16536
-
Thr
TGT
[ENA]
¡û
>W1710865560
LMGT01000009
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
117107
117032
-
Thr
TGT
[ENA]
¡û
>W1710870164
LMKH01000023
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
189160
189235
+
Thr
TGT
[ENA]
¡û
>W1710870367
LMKL01000005
Alphaproteobacteria
Sphingomonas sp. Leaf17 [LMKL]
325929
326004
+
Thr
TGT
[ENA]
¡û
>W1710870475
LMKN01000008
Alphaproteobacteria
Sphingomonas sp. Leaf20 [LMKN]
789483
789408
-
Thr
TGT
[ENA]
¡û
>W1710870741
LMKT01000012
Alphaproteobacteria
Sphingomonas sp. Leaf226 [LMKT]
301945
301870
-
Thr
TGT
[ENA]
¡û
>W1710870895
LMKW01000009
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
230513
230438
-
Thr
TGT
[ENA]
¡û
>W1710870966
LMKX01000011
Alphaproteobacteria
Sphingomonas sp. Leaf28 [LMKX]
318822
318897
+
Thr
TGT
[ENA]
¡û
>W1710871033
LMKZ01000001
Alphaproteobacteria
Sphingomonas sp. Leaf30 [LMKZ]
1173198
1173123
-
Thr
TGT
[ENA]
¡û
>W1710871127
LMLB01000001
Alphaproteobacteria
Sphingomonas sp. Leaf33 [LMLB]
2204243
2204318
+
Thr
TGT
[ENA]
¡û
>W1710871198
LMLC01000004
Alphaproteobacteria
Sphingomonas sp. Leaf34 [LMLC]
75551
75476
-
Thr
TGT
[ENA]
¡û
>W1710871220
LMLD01000010
Alphaproteobacteria
Sphingomonas sp. Leaf38 [LMLD]
316971
317046
+
Thr
TGT
[ENA]
¡û
>W1710872318
LMLW01000010
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
108182
108107
-
Thr
TGT
[ENA]
¡û
>W1710873853
LMNC01000006
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
190824
190749
-
Thr
TGT
[ENA]
¡û
>W1710876114
LMOY01000010
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
59610
59535
-
Thr
TGT
[ENA]
¡û
>W1710876735
LMPM01000001
Alphaproteobacteria
Sphingomonas sp. Leaf357 [LMPM]
2311023
2310948
-
Thr
TGT
[ENA]
¡û
>W1710877215
LMPX01000002
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
275483
275558
+
Thr
TGT
[ENA]
¡û
>W1711407948
MGLI01000015
Alphaproteobacteria
Caulobacterales bacterium GWE1_67_11 [MGLI]
17239
17314
+
Thr
TGT
[ENA]
¡û
>W1711407977
MGLM01000276
Alphaproteobacteria
Caulobacterales bacterium RIFOXYA1_FULL_67_7 [MGLM]
6324
6399
+
Thr
TGT
[ENA]
¡û
>W1711408019
MGLN01000175
Alphaproteobacteria
Caulobacterales bacterium RIFOXYB1_FULL_67_16 [MGLN]
12567
12642
+
Thr
TGT
[ENA]
¡û
>C171094857
CP019508
Alphaproteobacteria
Brevundimonas sp. LM2 [CP019508]
2385821
2385896
+
Thr
TGT
-
¡û
>C171095088
CP019511
Alphaproteobacteria
Sphingomonas sp. LM7 [CP019511]
184454
184379
-
Thr
TGT
-
¡û
>W131052430
AMYY01000011
Alphaproteobacteria
alpha proteobacterium L41A [AMYY]
64515
64590
+
Thr
TGT
[ENA]
¡û
>WENV180016141
FSUD01000534
[FSUD] metagenome; soil
2363
2438
+
Thr
TGT
[ENA]
¢þ
>WENV180020489
FTCZ01004753
[FTCZ] metagenome; soil
4041
4115
+
Thr
TGT
[ENA]
¢þ
>WENV180105021
OAPD01001783
[OAPD] marine metagenome; 2010
1947
2022
+
Thr
TGT
[ENA]
¢þ
>WENV180107687
OAPH01002024
[OAPH] marine metagenome; seawater
355
280
-
Thr
TGT
[ENA]
¢þ
>WENV180291838
OBIV01195283
[OBIV] soil metagenome; Clay
129
54
-
Thr
TGT
[ENA]
¢þ
>WENV180391278
OBPM01069902
[OBPM] marine metagenome; ENVO:00002010
171
96
-
Thr
TGT
[ENA]
¢þ
>WENV181191630
OEPS010147036
[OEPS] soil metagenome; soil
36
111
+
Thr
TGT
[ENA]
¢þ
>WENV181223416
OFDC01012580
[OFDC] hot springs metagenome; Water
1072
1147
+
Thr
TGT
[ENA]
¢þ
>WENV181227182
OFDN01002932
[OFDN] hot springs metagenome; Water
6858
6933
+
Thr
TGT
[ENA]
¢þ
>WENV181371144
OFQU01035428
[OFQU] wastewater metagenome; Exp Tend CN 90WW
161
236
+
Thr
TGT
[ENA]
¢þ
>WENV181379600
OFRD01003899
[OFRD] wastewater metagenome; Exp Tend CN 100WW
3567
3492
-
Thr
TGT
[ENA]
¢þ
>WENV181384311
OFRI01000103
[OFRI] wastewater metagenome; Exp Tend VB 90WW
21145
21070
-
Thr
TGT
[ENA]
¢þ
>WENV181384794
OFRI01010938
[OFRI] wastewater metagenome; Exp Tend VB 90WW
76
1
-
Thr
TGT
[ENA]
¢þ
>WENV181385047
OFRI01028929
[OFRI] wastewater metagenome; Exp Tend VB 90WW
76
1
-
Thr
TGT
[ENA]
¢þ
>WENV181386265
OFRL01001773
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
3865
3790
-
Thr
TGT
[ENA]
¢þ
>WENV181391206
OFRQ01066676
[OFRQ] seawater metagenome; seawater
254
329
+
Thr
TGT
[ENA]
¢þ
>W08010826
ABRU01000033
Alphaproteobacteria
Brevundimonas sp. BAL3 [ABRU]
58552
58480
-
Thr
TGT
[ENA]
¡û
>WENV183626311
OOGH01068697
[OOGH] marine metagenome; seawater
254
329
+
Thr
TGT
[ENA]
¢þ
>WENV183746635
POYE01043488
[POYE] biofilm metagenome; steel pipe from biofilm reactor
377
452
+
Thr
TGT
[ENA]
¢þ
>WENV170569783
FLMP01301912
[FLMP] seawater metagenome; seawater
263
188
-
Thr
TGT
[ENA]
¢þ
>WENV170574388
FLYM01032501
[FLYM] hot springs metagenome; Sediment
1280
1205
-
Thr
TGT
[ENA]
¢þ
>WENV170577558
FSSH01000179
[FSSH] freshwater metagenome; drinking water
37244
37169
-
Thr
TGT
[ENA]
¢þ
>WENV170658937
JUGB01000709
[JUGB] scorpion gut metagenome; ten pooled guts of food-deprived Vaejovis mexicanus smith and Centruroides limpidus
2321
2246
-
Thr
TGT
[ENA]
¢þ
>WENV170711527
LNFM01005692
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
16189
16114
-
Thr
TGT
[ENA]
¢þ
>WENV170712438
LNFM01013341
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
9212
9287
+
Thr
TGT
[ENA]
¢þ
>WENV170714075
LNFM01052984
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1383
1458
+
Thr
TGT
[ENA]
¢þ
>WENV170784062
MCHG01000005
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
268477
268552
+
Thr
TGT
[ENA]
¢þ
>WENV170838379
MDSZ01166767
[MDSZ] marine metagenome; seawater
67877
67952
+
Thr
TGT
[ENA]
¢þ
>C181056253
CP022048
Alphaproteobacteria
Brevundimonas vesicularis FDAARGOS_289 [CP022048]
2910858
2910783
-
Thr
TGT
-
¡û
>C181108658
CP024923
Alphaproteobacteria
Sphingomonas psychrotolerans Cra20 [CP024923]
105389
105314
-
Thr
TGT
-
¡û
>C191154749
CP037913
Alphaproteobacteria
Sphingomonas sp. AAP5 [CP037913]
1992907
1992982
+
Thr
TGT
-
¡û
>C191163772
CP039249
Alphaproteobacteria
Sphingomonas sp. PAMC26645 [CP039249]
1788861
1788786
-
Thr
TGT
-
¡û
>C191166132
CP039435
Alphaproteobacteria
Brevundimonas sp. SGAir0440 [CP039435]
1691720
1691645
-
Thr
TGT
-
¡û
>W141712438
JMQR01000024
Alphaproteobacteria
Brevundimonas sp. EAKA [JMQR]
4958
4883
-
Thr
TGT
[ENA]
¡û
>W141801054
JPDP01000806
Alphaproteobacteria
Sphingomonas sp. STIS6.2 [JPDP]
2138
2213
+
Thr
TGT
[ENA]
¡û
>W141805164
JPJC01000059
Alphaproteobacteria
Sphingomonas sp. FUKUSWIS1 [JPJC]
24925
25000
+
Thr
TGT
[ENA]
¡û
>W1910725232
MGLJ01000518
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_67_30 [MGLJ]
2429
2504
+
Thr
TGT
[ENA]
¡û
>W1910725285
MGLL01000050
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_12_FULL_68_13 [MGLL]
23983
23908
-
Thr
TGT
[ENA]
¡û
>W1911566735
PCPB01000001
Alphaproteobacteria
Brevundimonas sp. MYb52 [PCPB]
56060
55985
-
Thr
TGT
[ENA]
¡û
>W1911566944
PCPF01000001
Alphaproteobacteria
Brevundimonas sp. MYb46 [PCPF]
56060
55985
-
Thr
TGT
[ENA]
¡û
>W1911567222
PCPK01000039
Alphaproteobacteria
Brevundimonas sp. MYb33 [PCPK]
5438
5363
-
Thr
TGT
[ENA]
¡û
>W1911567310
PCPM01000033
Alphaproteobacteria
Brevundimonas sp. MYb31 [PCPM]
5290
5215
-
Thr
TGT
[ENA]
¡û
>W1911567414
PCPO01000038
Alphaproteobacteria
Brevundimonas sp. MYb27 [PCPO]
23357
23432
+
Thr
TGT
[ENA]
¡û
>W1810463395
PZZN01000001
Alphaproteobacteria
Sphingomonas aerolata NW12 [PZZN]
307232
307307
+
Thr
TGT
[ENA]
¡û
>W1810475042
QAIS01000057
Alphaproteobacteria
Sphingomonas sp. HMWF008 [QAIS]
4635
4560
-
Thr
TGT
[ENA]
¡û
>W1810476711
QAOF01000003
Alphaproteobacteria
Sphingomonas sp. PP-CE-3G-477 [QAOF]
299027
298952
-
Thr
TGT
[ENA]
¡û
>W1810476760
QAOG01000002
Alphaproteobacteria
Sphingomonas aurantiaca MA101b [QAOG]
10868
10793
-
Thr
TGT
[ENA]
¡û
>W1810693149
QLLC01000005
Alphaproteobacteria
Brevundimonas bullata HAMBI_262 [QLLC]
101021
101096
+
Thr
TGT
[ENA]
¡û
>SRA1014367
SRR023845.107123
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
78
3
-
Thr
TGT
[SRA]
>SRA1014481
SRR023845.158337
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
113
188
+
Thr
TGT
[SRA]
>SRA1014674
SRR023845.256104
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
148
223
+
Thr
TGT
[SRA]
>SRA1014756
SRR023845.300594
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
177
102
-
Thr
TGT
[SRA]
>SRA1014761
SRR023845.301851
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
177
102
-
Thr
TGT
[SRA]
>SRA1014767
SRR023845.304332
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
225
150
-
Thr
TGT
[SRA]
>SRA1014816
SRR023845.325393
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
33
108
+
Thr
TGT
[SRA]
>SRA1015016
SRR023845.423919
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
205
130
-
Thr
TGT
[SRA]
>SRA1015033
SRR023845.427639
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
97
172
+
Thr
TGT
[SRA]
>SRA1015056
SRR023845.442168
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
92
17
-
Thr
TGT
[SRA]
>SRA1015133
SRR023845.471606
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
161
86
-
Thr
TGT
[SRA]
>SRA1015546
SRR023846.106576
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
210
135
-
Thr
TGT
[SRA]
>SRA1015787
SRR023846.200785
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
245
170
-
Thr
TGT
[SRA]
>SRA1016076
SRR023846.338781
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
212
137
-
Thr
TGT
[SRA]
>SRA1016151
SRR023846.371463
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
58
133
+
Thr
TGT
[SRA]
>W10109865
ADBM01000018
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
31860
31785
-
Thr
TGT
[ENA]
¡û
>C10102225
CP002102
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [CP002102]
1483314
1483239
-
Thr
TGT
[Ensembl]
¡û
>W11112302
ADBM01000018
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
31860
31785
-
Thr
TGT
[ENA]
¡û
>W1511357082
JRVI01000296
Alphaproteobacteria
Sphingomonas sp. Ant20 [JRVI]
15965
15890
-
Thr
TGT
[ENA]
¡û
>W1511361478
JSBN01000015
Alphaproteobacteria
Sphingomonas sp. Ant H11 [JSBN]
40357
40432
+
Thr
TGT
[ENA]
¡û
>W1511390140
JSXI01000022
Alphaproteobacteria
Sphingomonas sp. ERG5 [JSXI]
12557
12482
-
Thr
TGT
[ENA]
¡û
>W1511489480
JWSY01000023
Alphaproteobacteria
Brevundimonas nasdae TPW30 [JWSY]
30806
30731
-
Thr
TGT
[ENA]
¡û
>W1511547893
JZRG01000021
Alphaproteobacteria
Brevundimonas sp. KM4 [JZRG]
53473
53398
-
Thr
TGT
[ENA]
¡û
>C161047047
CP012897
Alphaproteobacteria
Brevundimonas sp. DS20 [CP012897]
2666593
2666668
+
Thr
TGT
[Ensembl]
¡û
>C161089104
CP015511
Alphaproteobacteria
Brevundimonas sp. GW460-12-10-14-LB2 [CP015511]
1550310
1550385
+
Thr
TGT
[Ensembl]
¡û
>W1610074202
BCWM01000001
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
77910
77985
+
Thr
TGT
[ENA]
¡û
>W121033229
AHIR01000008
Alphaproteobacteria
Sphingomonas echinoides ATCC 14820 [AHIR]
178437
178512
+
Thr
TGT
[ENA]
¡û
>W121033295
AHIS01000099
Alphaproteobacteria
Sphingomonas sp. PAMC 26605 [AHIS]
3824
3899
+
Thr
TGT
[ENA]
¡û
>W1610726186
LMFL01000008
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
67572
67497
-
Thr
TGT
[ENA]
¡û
>W1610726205
LMFL01000024
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
16611
16536
-
Thr
TGT
[ENA]
¡û
>W1610727906
LMGT01000009
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
117107
117032
-
Thr
TGT
[ENA]
¡û
>W1610732510
LMKH01000023
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
189160
189235
+
Thr
TGT
[ENA]
¡û
>W1610732713
LMKL01000005
Alphaproteobacteria
Sphingomonas sp. Leaf17 [LMKL]
325929
326004
+
Thr
TGT
[ENA]
¡û
>W1610732821
LMKN01000008
Alphaproteobacteria
Sphingomonas sp. Leaf20 [LMKN]
789483
789408
-
Thr
TGT
[ENA]
¡û
>W1610733087
LMKT01000012
Alphaproteobacteria
Sphingomonas sp. Leaf226 [LMKT]
301945
301870
-
Thr
TGT
[ENA]
¡û
>W1610733241
LMKW01000009
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
230513
230438
-
Thr
TGT
[ENA]
¡û
>W1610733312
LMKX01000011
Alphaproteobacteria
Sphingomonas sp. Leaf28 [LMKX]
318822
318897
+
Thr
TGT
[ENA]
¡û
>W1610733379
LMKZ01000001
Alphaproteobacteria
Sphingomonas sp. Leaf30 [LMKZ]
1173198
1173123
-
Thr
TGT
[ENA]
¡û
>W1610733473
LMLB01000001
Alphaproteobacteria
Sphingomonas sp. Leaf33 [LMLB]
2204243
2204318
+
Thr
TGT
[ENA]
¡û
>W1610733544
LMLC01000004
Alphaproteobacteria
Sphingomonas sp. Leaf34 [LMLC]
75551
75476
-
Thr
TGT
[ENA]
¡û
>W1610733566
LMLD01000010
Alphaproteobacteria
Sphingomonas sp. Leaf38 [LMLD]
316971
317046
+
Thr
TGT
[ENA]
¡û
>W1610734664
LMLW01000010
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
108182
108107
-
Thr
TGT
[ENA]
¡û
>W1610736199
LMNC01000006
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
190824
190749
-
Thr
TGT
[ENA]
¡û
>W1610738460
LMOY01000010
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
59610
59535
-
Thr
TGT
[ENA]
¡û
>W1610739081
LMPM01000001
Alphaproteobacteria
Sphingomonas sp. Leaf357 [LMPM]
2311023
2310948
-
Thr
TGT
[ENA]
¡û
>W1610739561
LMPX01000002
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
275483
275558
+
Thr
TGT
[ENA]
¡û
>W1710071320
BCWM01000001
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
77910
77985
+
Thr
TGT
[ENA]
¡û
>W1710084609
BDMM01000001
Alphaproteobacteria
Brevundimonas sp. SH203 [BDMM]
464165
464240
+
Thr
TGT
[ENA]
¡û
>W1710527022
FNKT01000001
Alphaproteobacteria
Brevundimonas sp. 374 [FNKT]
808622
808697
+
Thr
TGT
[ENA]
¡û
>W1710571508
FOVZ01000001
Alphaproteobacteria
Sphingomonas sp. OK281 [FOVZ]
275514
275439
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK