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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237574 (7 seq.)
>WENV183746008
POVV01003582
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
2090
2014
-
Thr
GGT
[ENA]
¡û
>W1910918606
NIBG01000025
Bacillota
Anaeromicrobium sediminis DY2726D [NIBG]
63020
63096
+
Thr
GGT
[ENA]
¡û
>W2010968458
NIBG01000025
Bacillota
Anaeromicrobium sediminis DY2726D [NIBG]
63020
63096
+
Thr
GGT
[ENA]
¡û
>W2011509421
RYYS01000066
Bacillota
Clostridiaceae bacterium MJB2 [RYYS]
417
341
-
Thr
GGT
[ENA]
¡û
>W2110371137
JADPRS010000015
Bacteroidota
Lutibacter sp. B2 [JADPRS]
49343
49419
+
Thr
GGT
[ENA]
¡û
>W1710589063
FQZV01000022
Bacillota
Geosporobacter subterraneus DSM 17957 [FQZV]
62566
62642
+
Thr
GGT
[ENA]
¡û
>W1710589544
FRAG01000059
Bacillota
Paramaledivibacter caminithermalis DSM 15212 [FRAG]
528
452
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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