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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237578 (54 seq.)
>W1710865817
LMGZ01000002
Alphaproteobacteria
Devosia sp. Root635 [LMGZ]
30140
30216
+
Ile
GAT
[ENA]
¡û
>W131162105
AQYH01000011
Alphaproteobacteria
Kaistia granuli DSM 23481 [AQYH]
2113
2189
+
Ile
GAT
[ENA]
¡û
>WENV181308493
OFIS01038086
[OFIS] sludge metagenome; sludge
70
146
+
Ile
GAT
[ENA]
¡û
>WENV183725764
PJQF01013730
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
646
570
-
Ile
GAT
[ENA]
¡û
>WENV183729049
PJTQ01003266
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
2664
2588
-
Ile
GAT
[ENA]
¡û
>WENV183729254
PJTQ01015902
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
915
839
-
Ile
GAT
[ENA]
¡û
>WENV183729605
PJTQ01087943
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
1
77
+
Ile
GAT
[ENA]
¡û
>WENV183733771
PJTY01023655
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
277
353
+
Ile
GAT
[ENA]
¡û
>WENV183740943
PJUF01020229
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
507
583
+
Ile
GAT
[ENA]
¡û
>WENV183740996
PJUF01026224
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
296
372
+
Ile
GAT
[ENA]
¡û
>WENV183742905
PJUI01009151
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
122
46
-
Ile
GAT
[ENA]
¡û
>WENV183743570
PJUJ01006797
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
857
781
-
Ile
GAT
[ENA]
¡û
>WENV183743649
PJUJ01014318
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
297
221
-
Ile
GAT
[ENA]
¡û
>WENV170121483
CENM01032780
[CENM] marine metagenome genome assembly TARA_032_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1066
990
-
Ile
GAT
[ENA]
¡û
>WENV170136607
CENV01053410
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
274
198
-
Ile
GAT
[ENA]
¡û
>WENV170152016
CEOE01019968
[CEOE] marine metagenome genome assembly TARA_025_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1460
1384
-
Ile
GAT
[ENA]
¡û
>WENV170175718
CEOS01000961
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1267
1191
-
Ile
GAT
[ENA]
¡û
>W1810779236
QQNH01000011
Alphaproteobacteria
Pelagibacterium lacus XYN52 [QQNH]
72111
72187
+
Ile
GAT
[ENA]
¡û
>W1810779238
QQNH01000011
Alphaproteobacteria
Pelagibacterium lacus XYN52 [QQNH]
79252
79328
+
Ile
GAT
[ENA]
¡û
>C151079181
CP011300
Alphaproteobacteria
Devosia sp. H5989 [CP011300]
3158251
3158175
-
Ile
GAT
[Ensembl]
¡û
>C151079187
CP011300
Alphaproteobacteria
Devosia sp. H5989 [CP011300]
2694981
2694905
-
Ile
GAT
[Ensembl]
¡û
>W2010497698
JAALFG010000001
Alphaproteobacteria
Devosia sp. H239 [JAALFG]
1451
1375
-
Ile
GAT
[ENA]
¡û
>W2010497730
JAALFG010000006
Alphaproteobacteria
Devosia sp. H239 [JAALFG]
153420
153344
-
Ile
GAT
[ENA]
¡û
>W2010497732
JAALFG010000006
Alphaproteobacteria
Devosia sp. H239 [JAALFG]
145333
145257
-
Ile
GAT
[ENA]
¡û
>W2010726343
JACIEW010000020
Alphaproteobacteria
Devosia subaequoris DSM 23447 [JACIEW]
1980
2056
+
Ile
GAT
[ENA]
¡û
>W2011512659
RZMX01000011
Alphaproteobacteria
Pelagibacterium montanilacus CCL18 [RZMX]
5078
5154
+
Ile
GAT
[ENA]
¡û
>W2011512675
RZMX01000015
Alphaproteobacteria
Pelagibacterium montanilacus CCL18 [RZMX]
3785
3709
-
Ile
GAT
[ENA]
¡û
>W2011512677
RZMX01000016
Alphaproteobacteria
Pelagibacterium montanilacus CCL18 [RZMX]
2086
2162
+
Ile
GAT
[ENA]
¡û
>W2011512680
RZMX01000020
Alphaproteobacteria
Pelagibacterium montanilacus CCL18 [RZMX]
38739
38663
-
Ile
GAT
[ENA]
¡û
>W2012196053
VWNA01000001
Alphaproteobacteria
Rhizobiales bacterium Sp-1 [VWNA]
2028564
2028488
-
Ile
GAT
[ENA]
¡û
>W2012196057
VWNA01000001
Alphaproteobacteria
Rhizobiales bacterium Sp-1 [VWNA]
1765807
1765731
-
Ile
GAT
[ENA]
¡û
>W2110022743
BMFM01000003
Alphaproteobacteria
Youhaiella tibetensis CGMCC 1.12719 [BMFM]
1835
1911
+
Ile
GAT
[ENA]
¡û
>W2110668821
JAICBX010000010
Alphaproteobacteria
Hoeflea sp. WL0058 [JAICBX]
2278
2354
+
Ile
GAT
[ENA]
¡û
>W2110698679
JAIUIE010000026
Alphaproteobacteria
Mesorhizobium sp. BR1-1-16 [JAIUIE]
3909
3833
-
Ile
GAT
[ENA]
¡û
>C211381434
CP080590
Alphaproteobacteria
Devosia sp. SCS-3 [CP080590]
286014
286090
+
Ile
GAT
-
¡û
>C211381454
CP080590
Alphaproteobacteria
Devosia sp. SCS-3 [CP080590]
3583440
3583364
-
Ile
GAT
-
¡û
>C231287312
CP090960
Alphaproteobacteria
Devosiaceae bacterium LMO-2 [CP090960]
2702681
2702757
+
Ile
GAT
-
¡û
>C231287314
CP090960
Alphaproteobacteria
Devosiaceae bacterium LMO-2 [CP090960]
2708836
2708912
+
Ile
GAT
-
¡û
>C231518488
CP107716
Alphaproteobacteria
Pelagibacterium sp. YIM 151497 [CP107716]
672707
672783
+
Ile
GAT
-
¡û
>C241059305
CP041690
Alphaproteobacteria
Youhaiella tibetensis fig4 [CP041690]
3867268
3867192
-
Ile
GAT
-
¡û
>C241059311
CP041690
Alphaproteobacteria
Youhaiella tibetensis fig4 [CP041690]
3450469
3450393
-
Ile
GAT
-
¡û
>C241276348
CP127251
Alphaproteobacteria
Devosia sp. YIM 151766 [CP127251]
2771877
2771801
-
Ile
GAT
-
¡û
>W2310024480
BSNS01000007
Alphaproteobacteria
Devosia nitrariae NBRC 112416 [BSNS]
293750
293674
-
Ile
GAT
[ENA]
¡û
>W1511541999
JZEY01000061
Alphaproteobacteria
Devosia chinhatensis IPL18 [JZEY]
604868
604792
-
Ile
GAT
[ENA]
¡û
>W1511542001
JZEY01000061
Alphaproteobacteria
Devosia chinhatensis IPL18 [JZEY]
475958
475882
-
Ile
GAT
[ENA]
¡û
>C161047986
CP012945
Alphaproteobacteria
Devosia sp. A16 [CP012945]
1523760
1523684
-
Ile
GAT
-
¡û
>C161047991
CP012945
Alphaproteobacteria
Devosia sp. A16 [CP012945]
936010
935934
-
Ile
GAT
-
¡û
>W1610728163
LMGZ01000002
Alphaproteobacteria
Devosia sp. Root635 [LMGZ]
30140
30216
+
Ile
GAT
[ENA]
¡û
>W1710516645
FNCS01000001
Alphaproteobacteria
Pelagibacterium luteolum [FNCS]
560
484
-
Ile
GAT
[ENA]
¡û
>W1710582197
FPKU01000005
Alphaproteobacteria
Devosia enhydra [FPKU]
486
410
-
Ile
GAT
[ENA]
¡û
>W1710583199
FQUP01000004
Alphaproteobacteria
Kaistia soli DSM 19436 [FQUP]
587401
587325
-
Ile
GAT
[ENA]
¡û
>W1710583204
FQUP01000007
Alphaproteobacteria
Kaistia soli DSM 19436 [FQUP]
2178
2254
+
Ile
GAT
[ENA]
¡û
>W1710583209
FQUP01000008
Alphaproteobacteria
Kaistia soli DSM 19436 [FQUP]
4036
3960
-
Ile
GAT
[ENA]
¡û
>W1710583212
FQUP01000010
Alphaproteobacteria
Kaistia soli DSM 19436 [FQUP]
4036
3960
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK