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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237580 (96 seq.)
>W1710815791
LKKO01000013
Alphaproteobacteria
Methylobacterium sp. GXS13 [LKKO]
123618
123543
-
Ala
CGC
[ENA]
¡û
>W1710872679
LMME01000003
Alphaproteobacteria
Methylobacterium sp. Leaf85 [LMME]
29002
29077
+
Ala
CGC
[ENA]
¡û
>W1710872773
LMMG01000007
Alphaproteobacteria
Methylobacterium sp. Leaf86 [LMMG]
90646
90721
+
Ala
CGC
[ENA]
¡û
>W1710872900
LMMI01000061
Alphaproteobacteria
Methylobacterium sp. Leaf87 [LMMI]
173429
173504
+
Ala
CGC
[ENA]
¡û
>W1710872959
LMMK01000012
Alphaproteobacteria
Methylobacterium sp. Leaf88 [LMMK]
250366
250441
+
Ala
CGC
[ENA]
¡û
>W1710873017
LMML01000029
Alphaproteobacteria
Methylobacterium sp. Leaf89 [LMML]
781596
781521
-
Ala
CGC
[ENA]
¡û
>W1710873084
LMMN01000006
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
77812
77887
+
Ala
CGC
[ENA]
¡û
>W1710873203
LMMP01000050
Alphaproteobacteria
Methylobacterium sp. Leaf91 [LMMP]
132304
132229
-
Ala
CGC
[ENA]
¡û
>W1710873225
LMMQ01000009
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
113047
113122
+
Ala
CGC
[ENA]
¡û
>W1710873354
LMMS01000012
Alphaproteobacteria
Methylobacterium sp. Leaf93 [LMMS]
251890
251965
+
Ala
CGC
[ENA]
¡û
>W1710873465
LMMU01000008
Alphaproteobacteria
Methylobacterium sp. Leaf99 [LMMU]
325839
325914
+
Ala
CGC
[ENA]
¡û
>W1710873575
LMMW01000063
Alphaproteobacteria
Methylobacterium sp. Leaf100 [LMMW]
49439
49364
-
Ala
CGC
[ENA]
¡û
>W1710873623
LMMX01000040
Alphaproteobacteria
Methylobacterium sp. Leaf102 [LMMX]
135311
135386
+
Ala
CGC
[ENA]
¡û
>W1710873697
LMMZ01000034
Alphaproteobacteria
Methylobacterium sp. Leaf104 [LMMZ]
153575
153650
+
Ala
CGC
[ENA]
¡û
>W1710873776
LMNB01000001
Alphaproteobacteria
Methylobacterium sp. Leaf106 [LMNB]
107323
107248
-
Ala
CGC
[ENA]
¡û
>W1710873867
LMND01000002
Alphaproteobacteria
Methylobacterium sp. Leaf108 [LMND]
5156
5081
-
Ala
CGC
[ENA]
¡û
>W1710873944
LMNE01000056
Alphaproteobacteria
Methylobacterium sp. Leaf111 [LMNE]
130060
130135
+
Ala
CGC
[ENA]
¡û
>W1710874035
LMNG01000031
Alphaproteobacteria
Methylobacterium sp. Leaf112 [LMNG]
173145
173070
-
Ala
CGC
[ENA]
¡û
>W1710874137
LMNJ01000002
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
85320
85395
+
Ala
CGC
[ENA]
¡û
>W1710874234
LMNL01000001
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
766031
765956
-
Ala
CGC
[ENA]
¡û
>W1710874333
LMNN01000003
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
112198
112273
+
Ala
CGC
[ENA]
¡û
>W1710874338
LMNN01000009
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
221501
221426
-
Ala
CGC
[ENA]
¡û
>W1710874417
LMNP01000003
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
157968
157893
-
Ala
CGC
[ENA]
¡û
>W1710874465
LMNQ01000003
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
105515
105590
+
Ala
CGC
[ENA]
¡û
>W1710874582
LMNS01000036
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
216611
216536
-
Ala
CGC
[ENA]
¡û
>W1710874652
LMNU01000012
Alphaproteobacteria
Methylobacterium sp. Leaf125 [LMNU]
522149
522074
-
Ala
CGC
[ENA]
¡û
>W1710877790
LMQK01000006
Alphaproteobacteria
Methylobacterium sp. Leaf399 [LMQK]
84596
84671
+
Ala
CGC
[ENA]
¡û
>W1710878298
LMQV01000023
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
89931
90006
+
Ala
CGC
[ENA]
¡û
>W1710878514
LMRA01000001
Alphaproteobacteria
Methylobacterium sp. Leaf465 [LMRA]
285357
285282
-
Ala
CGC
[ENA]
¡û
>W1710878641
LMRC01000034
Alphaproteobacteria
Methylobacterium sp. Leaf466 [LMRC]
85232
85307
+
Ala
CGC
[ENA]
¡û
>W1710878739
LMRE01000045
Alphaproteobacteria
Methylobacterium sp. Leaf469 [LMRE]
119256
119331
+
Ala
CGC
[ENA]
¡û
>W1710879172
LMRM01000001
Alphaproteobacteria
Methylobacterium sp. Leaf94 [LMRM]
242249
242174
-
Ala
CGC
[ENA]
¡û
>W131159745
AQVT01000001
Alphaproteobacteria
Methylobacterium sp. 88A [AQVT]
1495907
1495982
+
Ala
CGC
[ENA]
¡û
>W131166752
ARCS01000002
Alphaproteobacteria
Methylobacterium sp. 77 [ARCS]
336070
336145
+
Ala
CGC
[ENA]
¡û
>W1711571768
MNAO01000356
Alphaproteobacteria
Methylorubrum extorquens [MNAO]
1479
1404
-
Ala
CGC
[ENA]
¡û
>C171092164
CP019322
Alphaproteobacteria
Methylorubrum extorquens PSBB040 [CP019322]
2949653
2949578
-
Ala
CGC
-
¡û
>C171115174
CP021054
Alphaproteobacteria
Methylorubrum zatmanii PSBB041 [CP021054]
166825
166900
+
Ala
CGC
-
¡û
>W08002428
ABEX01000019
Alphaproteobacteria
Methylorubrum extorquens CM4 [ABEX]
37584
37512
-
Ala
CGC
[ENA]
¡û
>C08006495
CP000908
Alphaproteobacteria
Methylorubrum extorquens PA1 [CP000908]
4194374
4194449
+
Ala
CGC
[Ensembl]
¡û
>C08006496
CP000908
Alphaproteobacteria
Methylorubrum extorquens PA1 [CP000908]
4208419
4208494
+
Ala
CGC
[Ensembl]
¡û
>W141277787
JAEV01000007
Alphaproteobacteria
Methylobacterium sp. 10 [JAEV]
1334375
1334300
-
Ala
CGC
[ENA]
¡û
>WENV170577767
FSSH01000954
[FSSH] freshwater metagenome; drinking water
16470
16545
+
Ala
CGC
[ENA]
¢þ
>C181227873
LT962688
Alphaproteobacteria
Methylorubrum extorquens TK 0001 [LT962688]
1629980
1629905
-
Ala
CGC
-
¡û
>W09106842
ABEC01000002
Alphaproteobacteria
Methylorubrum extorquens PA1 [ABEC]
524722
524647
-
Ala
CGC
[ENA]
¡û
>W09106847
ABEC01000003
Alphaproteobacteria
Methylorubrum extorquens PA1 [ABEC]
495683
495758
+
Ala
CGC
[ENA]
¡û
>C09107426
CP001298
Alphaproteobacteria
Methylorubrum extorquens CM4 [CP001298]
4297924
4297999
+
Ala
CGC
[Ensembl]
¡û
>C09107511
FP103042
Alphaproteobacteria
Methylorubrum extorquens DM4 [FP103042]
4641080
4641155
+
Ala
CGC
[Ensembl]
¡û
>C09107512
FP103042
Alphaproteobacteria
Methylorubrum extorquens DM4 [FP103042]
4655198
4655273
+
Ala
CGC
[Ensembl]
¡û
>C09107613
CP001510
Alphaproteobacteria
Methylorubrum extorquens AM1 [CP001510]
4242720
4242795
+
Ala
CGC
[Ensembl]
¡û
>W1810057195
PDHT01000006
Alphaproteobacteria
Methylobacterium sp. V23 [PDHT]
146136
146211
+
Ala
CGC
[ENA]
¡û
>W1810487195
QAYK01000001
Alphaproteobacteria
Methylobacterium sp. GV104 [QAYK]
258786
258711
-
Ala
CGC
[ENA]
¡û
>W1810658542
QJJJ01000008
Alphaproteobacteria
Methylobacterium sp. B4 [QJJJ]
180270
180345
+
Ala
CGC
[ENA]
¡û
>W1810672695
QJTP01000002
Alphaproteobacteria
Methylobacterium sp. GV094 [QJTP]
258786
258711
-
Ala
CGC
[ENA]
¡û
>SRA1015725
SRR023846.173010
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
6
81
+
Ala
CGC
[SRA]
>SRA1015918
SRR023846.260340
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
117
192
+
Ala
CGC
[SRA]
>SRA1016249
SRR023846.418097
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
133
208
+
Ala
CGC
[SRA]
>C161004972
CP006992
Alphaproteobacteria
Methylobacterium sp. AMS5 [CP006992]
4048671
4048746
+
Ala
CGC
[Ensembl]
¡û
>W1610042954
BAZM01000120
Alphaproteobacteria
Methylorubrum rhodinum JCM 2811 [BAZM]
1205
1130
-
Ala
CGC
[ENA]
¡û
>W121010697
AGJK01000202
Alphaproteobacteria
Methylorubrum extorquens DSM 13060 [AGJK]
4214
4289
+
Ala
CGC
[ENA]
¡û
>W121081142
AKFK01000085
Alphaproteobacteria
Methylobacterium sp. GXF4 [AKFK]
213582
213657
+
Ala
CGC
[ENA]
¡û
>W1610679888
LKKO01000013
Alphaproteobacteria
Methylobacterium sp. GXS13 [LKKO]
123618
123543
-
Ala
CGC
[ENA]
¡û
>W1610735025
LMME01000003
Alphaproteobacteria
Methylobacterium sp. Leaf85 [LMME]
29002
29077
+
Ala
CGC
[ENA]
¡û
>W1610735119
LMMG01000007
Alphaproteobacteria
Methylobacterium sp. Leaf86 [LMMG]
90646
90721
+
Ala
CGC
[ENA]
¡û
>W1610735246
LMMI01000061
Alphaproteobacteria
Methylobacterium sp. Leaf87 [LMMI]
173429
173504
+
Ala
CGC
[ENA]
¡û
>W1610735305
LMMK01000012
Alphaproteobacteria
Methylobacterium sp. Leaf88 [LMMK]
250366
250441
+
Ala
CGC
[ENA]
¡û
>W1610735363
LMML01000029
Alphaproteobacteria
Methylobacterium sp. Leaf89 [LMML]
781596
781521
-
Ala
CGC
[ENA]
¡û
>W1610735430
LMMN01000006
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
77812
77887
+
Ala
CGC
[ENA]
¡û
>W1610735549
LMMP01000050
Alphaproteobacteria
Methylobacterium sp. Leaf91 [LMMP]
132304
132229
-
Ala
CGC
[ENA]
¡û
>W1610735571
LMMQ01000009
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
113047
113122
+
Ala
CGC
[ENA]
¡û
>W1610735700
LMMS01000012
Alphaproteobacteria
Methylobacterium sp. Leaf93 [LMMS]
251890
251965
+
Ala
CGC
[ENA]
¡û
>W1610735811
LMMU01000008
Alphaproteobacteria
Methylobacterium sp. Leaf99 [LMMU]
325839
325914
+
Ala
CGC
[ENA]
¡û
>W1610735921
LMMW01000063
Alphaproteobacteria
Methylobacterium sp. Leaf100 [LMMW]
49439
49364
-
Ala
CGC
[ENA]
¡û
>W1610735969
LMMX01000040
Alphaproteobacteria
Methylobacterium sp. Leaf102 [LMMX]
135311
135386
+
Ala
CGC
[ENA]
¡û
>W1610736043
LMMZ01000034
Alphaproteobacteria
Methylobacterium sp. Leaf104 [LMMZ]
153575
153650
+
Ala
CGC
[ENA]
¡û
>W1610736122
LMNB01000001
Alphaproteobacteria
Methylobacterium sp. Leaf106 [LMNB]
107323
107248
-
Ala
CGC
[ENA]
¡û
>W1610736213
LMND01000002
Alphaproteobacteria
Methylobacterium sp. Leaf108 [LMND]
5156
5081
-
Ala
CGC
[ENA]
¡û
>W1610736290
LMNE01000056
Alphaproteobacteria
Methylobacterium sp. Leaf111 [LMNE]
130060
130135
+
Ala
CGC
[ENA]
¡û
>W1610736381
LMNG01000031
Alphaproteobacteria
Methylobacterium sp. Leaf112 [LMNG]
173145
173070
-
Ala
CGC
[ENA]
¡û
>W1610736483
LMNJ01000002
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
85320
85395
+
Ala
CGC
[ENA]
¡û
>W1610736580
LMNL01000001
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
766031
765956
-
Ala
CGC
[ENA]
¡û
>W1610736679
LMNN01000003
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
112198
112273
+
Ala
CGC
[ENA]
¡û
>W1610736684
LMNN01000009
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
221501
221426
-
Ala
CGC
[ENA]
¡û
>W1610736763
LMNP01000003
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
157968
157893
-
Ala
CGC
[ENA]
¡û
>W1610736811
LMNQ01000003
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
105515
105590
+
Ala
CGC
[ENA]
¡û
>W1610736928
LMNS01000036
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
216611
216536
-
Ala
CGC
[ENA]
¡û
>W1610736998
LMNU01000012
Alphaproteobacteria
Methylobacterium sp. Leaf125 [LMNU]
522149
522074
-
Ala
CGC
[ENA]
¡û
>W1610740136
LMQK01000006
Alphaproteobacteria
Methylobacterium sp. Leaf399 [LMQK]
84596
84671
+
Ala
CGC
[ENA]
¡û
>W1610740644
LMQV01000023
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
89931
90006
+
Ala
CGC
[ENA]
¡û
>W1610740860
LMRA01000001
Alphaproteobacteria
Methylobacterium sp. Leaf465 [LMRA]
285357
285282
-
Ala
CGC
[ENA]
¡û
>W1610740987
LMRC01000034
Alphaproteobacteria
Methylobacterium sp. Leaf466 [LMRC]
85232
85307
+
Ala
CGC
[ENA]
¡û
>W1610741085
LMRE01000045
Alphaproteobacteria
Methylobacterium sp. Leaf469 [LMRE]
119256
119331
+
Ala
CGC
[ENA]
¡û
>W1610741518
LMRM01000001
Alphaproteobacteria
Methylobacterium sp. Leaf94 [LMRM]
242249
242174
-
Ala
CGC
[ENA]
¡û
>W1710040114
BAZM01000120
Alphaproteobacteria
Methylorubrum rhodinum JCM 2811 [BAZM]
1205
1130
-
Ala
CGC
[ENA]
¡û
>W1710563172
FOPM01000005
Alphaproteobacteria
Methylobacterium gossipiicola [FOPM]
225851
225776
-
Ala
CGC
[ENA]
¡û
>W1710564957
FOQW01000006
Alphaproteobacteria
Methylobacterium brachiatum [FOQW]
329642
329717
+
Ala
CGC
[ENA]
¡û
>W1710568214
FOTK01000004
Alphaproteobacteria
Methylobacterium pseudosasicola [FOTK]
37448
37373
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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