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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237649 (81 seq.)
>W1710856418
LLZJ01000383
Actinomycetota
Streptomyces violaceusniger [LLZJ]
13112
13185
+
Arg
ACG
[ENA]
¡û
>W1710883872
LMWG01000224
Actinomycetota
Streptomyces albus subsp. albus [LMWG]
90356
90429
+
Arg
ACG
[ENA]
¡û
>W1710889847
LNBE01000004
Actinomycetota
Streptomyces roseifaciens MBT76 [LNBE]
1648598
1648671
+
Arg
ACG
[ENA]
¡û
>W1710889863
LNBE01000004
Actinomycetota
Streptomyces roseifaciens MBT76 [LNBE]
2216745
2216672
-
Arg
ACG
[ENA]
¡û
>W1711210334
LXIC01000005
Actinomycetota
Streptomyces sp. RTd22 [LXIC]
530360
530287
-
Arg
ACG
[ENA]
¡û
>W1711317373
MAXF01000060
Actinomycetota
Streptomyces sparsogenes [MAXF]
19635
19560
-
Arg
ACG
[ENA]
¡û
>W1711589895
MOEP01000034
Actinomycetota
Streptomyces cinnamoneus [MOEP]
74461
74388
-
Arg
ACG
[ENA]
¡û
>W1711589896
MOEP01000034
Actinomycetota
Streptomyces cinnamoneus [MOEP]
66430
66357
-
Arg
ACG
[ENA]
¡û
>W1711589924
MOEP01000138
Actinomycetota
Streptomyces cinnamoneus [MOEP]
54028
54101
+
Arg
ACG
[ENA]
¡û
>W1711739018
MUBN01000264
Actinomycetota
Streptomyces antimycoticus castelarensis [MUBN]
3213
3140
-
Arg
ACG
[ENA]
¡û
>W1711743865
MUFU01000184
Actinomycetota
Streptomyces alboverticillatus [MUFU]
2467
2540
+
Arg
ACG
[ENA]
¡û
>W1711743879
MUFU01000254
Actinomycetota
Streptomyces alboverticillatus [MUFU]
114
41
-
Arg
ACG
[ENA]
¡û
>C171122553
CP021744
Actinomycetota
Streptomyces albireticuli MDJK11 [CP021744]
3767026
3766953
-
Arg
ACG
-
¡û
>W131098709
AORZ01000128
Actinomycetota
Streptomyces mobaraensis NBRC 13819 = DSM 40847 [AORZ]
18284
18359
+
Arg
ACG
[ENA]
¡û
>WENV180016674
FSVS01000694
[FSVS] metagenome; soil
6840
6767
-
Arg
ACG
[ENA]
¢þ
>WENV180023327
FTHV01000202
[FTHV] metagenome; soil
2981
2906
-
Arg
ACG
[ENA]
¢þ
>WENV180023367
FTHV01001690
[FTHV] metagenome; soil
1040
1114
+
Arg
ACG
[ENA]
¢þ
>WENV180023368
FTHV01001690
[FTHV] metagenome; soil
1247
1322
+
Arg
ACG
[ENA]
¢þ
>WENV180033618
FTKL01000485
[FTKL] metagenome; soil
4704
4631
-
Arg
ACG
[ENA]
¢þ
>WENV180033794
FTKL01216893
[FTKL] metagenome; soil
75
1
-
Arg
ACG
[ENA]
¢þ
>WENV180344943
OBLL01366512
[OBLL] soil metagenome; soil
207
134
-
Arg
ACG
[ENA]
¢þ
>WENV180690749
OCZS010022317
[OCZS] soil metagenome; soil
1422
1496
+
Arg
ACG
[ENA]
¢þ
>WENV181292481
OFHE01022730
[OFHE] soil metagenome; Clay
414
488
+
Arg
ACG
[ENA]
¢þ
>W141274484
JABQ01000045
Actinomycetota
Streptomyces sp. PRh5 [JABQ]
80047
80120
+
Arg
ACG
[ENA]
¡û
>C181116320
CP025394
Actinomycetota
Kitasatospora sp. MMS16-BH015 [CP025394]
4195849
4195776
-
Arg
ACG
-
¡û
>C181200639
CP031455
Actinomycetota
Streptomyces olivoreticuli subsp. olivoreticuli ATCC 31159 [CP031455]
5222076
5222149
+
Arg
ACG
-
¡û
>C191127798
CP034587
Actinomycetota
Streptomyces luteoverticillatus CGMCC 15060 [CP034587]
3762895
3762968
+
Arg
ACG
-
¡û
>C191127815
CP034587
Actinomycetota
Streptomyces luteoverticillatus CGMCC 15060 [CP034587]
4341951
4341878
-
Arg
ACG
-
¡û
>W141756128
JNWZ01000015
Actinomycetota
Kitasatospora phosalacinea [JNWZ]
221915
221990
+
Arg
ACG
[ENA]
¡û
>W141756129
JNWZ01000015
Actinomycetota
Kitasatospora phosalacinea [JNWZ]
222025
222100
+
Arg
ACG
[ENA]
¡û
>W141757810
JNYE01000002
Actinomycetota
Kitasatospora phosalacinea [JNYE]
47842
47767
-
Arg
ACG
[ENA]
¡û
>W141757811
JNYE01000002
Actinomycetota
Kitasatospora phosalacinea [JNYE]
47732
47657
-
Arg
ACG
[ENA]
¡û
>W141763680
JOCF01000010
Actinomycetota
Streptomyces sp. NRRL WC-3742 [JOCF]
60202
60277
+
Arg
ACG
[ENA]
¡û
>W141763681
JOCF01000010
Actinomycetota
Streptomyces sp. NRRL WC-3742 [JOCF]
60310
60385
+
Arg
ACG
[ENA]
¡û
>W141767517
JOER01000011
Actinomycetota
Kitasatospora aureofaciens [JOER]
90645
90570
-
Arg
ACG
[ENA]
¡û
>W141767518
JOER01000011
Actinomycetota
Kitasatospora aureofaciens [JOER]
90538
90463
-
Arg
ACG
[ENA]
¡û
>W141768822
JOFL01000011
Actinomycetota
Streptomyces roseoverticillatus [JOFL]
5751
5678
-
Arg
ACG
[ENA]
¡û
>W141768843
JOFL01000026
Actinomycetota
Streptomyces roseoverticillatus [JOFL]
92645
92572
-
Arg
ACG
[ENA]
¡û
>W09120858
ACEX01000410
Actinomycetota
Streptomyces himastatinicus ATCC 53653 [ACEX]
3536
3609
+
Arg
ACG
[ENA]
¡û
>W1910613639
LGUI01000003
Actinomycetota
Streptomyces eurocidicus ATCC 27428 [LGUI]
531746
531673
-
Arg
ACG
[ENA]
¡û
>W1910618709
LJIW01000001
Actinomycetota
Streptomyces malaysiensis F913 [LJIW]
5723166
5723093
-
Arg
ACG
[ENA]
¡û
>W1910916447
NHZO01000148
Actinomycetota
Streptomyces cinnamoneus ATCC 21532 [NHZO]
191414
191341
-
Arg
ACG
[ENA]
¡û
>W1910916473
NHZO01000156
Actinomycetota
Streptomyces cinnamoneus ATCC 21532 [NHZO]
66540
66613
+
Arg
ACG
[ENA]
¡û
>W1911243736
NSGV01000001
Actinomycetota
Streptomyces sp. TLI_235 [NSGV]
4006723
4006798
+
Arg
ACG
[ENA]
¡û
>W1911243737
NSGV01000001
Actinomycetota
Streptomyces sp. TLI_235 [NSGV]
4006833
4006908
+
Arg
ACG
[ENA]
¡û
>W1911245249
NSJV01000588
Actinomycetota
Streptomyces albireticuli NRRL B-1670 [NSJV]
689
762
+
Arg
ACG
[ENA]
¡û
>W1911580751
PENC01000004
Actinomycetota
Streptomyces griseocarneus 132 [PENC]
64316
64243
-
Arg
ACG
[ENA]
¡û
>W1911580765
PENC01000009
Actinomycetota
Streptomyces griseocarneus 132 [PENC]
194263
194188
-
Arg
ACG
[ENA]
¡û
>W1810115686
PHNC01000031
Actinomycetota
Streptomyces orinoci NRRL B-3379 [PHNC]
1503386
1503313
-
Arg
ACG
[ENA]
¡û
>W1810185264
PKFQ01000001
Actinomycetota
Streptomyces cinnamoneus DSM 41675 [PKFQ]
3656837
3656910
+
Arg
ACG
[ENA]
¡û
>W1810185279
PKFQ01000001
Actinomycetota
Streptomyces cinnamoneus DSM 41675 [PKFQ]
4142509
4142436
-
Arg
ACG
[ENA]
¡û
>W1810387778
PXWG01000021
Actinomycetota
Streptosporangium nondiastaticum TBG75A20 [PXWG]
20226
20153
-
Arg
ACG
[ENA]
¡û
>W1810387826
PXWG01000197
Actinomycetota
Streptosporangium nondiastaticum TBG75A20 [PXWG]
5740
5667
-
Arg
ACG
[ENA]
¡û
>W10126650
AEDI01000041
Actinomycetota
Streptomyces violaceusniger Tu 4113 [AEDI]
79784
79711
-
Arg
ACG
[ENA]
¡û
>C10111291
CP002047
Actinomycetota
Streptomyces bingchenggensis BCW-1 [CP002047]
6465303
6465228
-
Arg
ACG
[Ensembl]
¡û
>C11122253
CP002994
Actinomycetota
Streptomyces violaceusniger Tu 4113 [CP002994]
10529679
10529606
-
Arg
ACG
[Ensembl]
¡û
>W11133911
AEDI01000041
Actinomycetota
Streptomyces violaceusniger Tu 4113 [AEDI]
79784
79711
-
Arg
ACG
[ENA]
¡û
>W1511529073
JYJF01000054
Actinomycetota
Saccharothrix sp. ST-888 [JYJF]
12799
12874
+
Arg
ACG
[ENA]
¡û
>W1511529074
JYJF01000054
Actinomycetota
Saccharothrix sp. ST-888 [JYJF]
12911
12986
+
Arg
ACG
[ENA]
¡û
>W1511545254
JZKH01000038
Actinomycetota
Streptomyces rubellomurinus ATCC 31215 [JZKH]
69524
69449
-
Arg
ACG
[ENA]
¡û
>W1511545255
JZKH01000038
Actinomycetota
Streptomyces rubellomurinus ATCC 31215 [JZKH]
69416
69341
-
Arg
ACG
[ENA]
¡û
>W1511569602
LAKD01000030
Actinomycetota
Streptomyces antioxidans MUSC164 [LAKD]
42384
42311
-
Arg
ACG
[ENA]
¡û
>W1511687937
LFVW01000814
Actinomycetota
Kitasatospora sp. MY 5-36 [LFVW]
2272
2197
-
Arg
ACG
[ENA]
¡û
>W1511689665
LFXA01000015
Actinomycetota
Streptomyces caatingaensis CMAA 1322 [LFXA]
21991
21918
-
Arg
ACG
[ENA]
¡û
>W1511689705
LFXA01000018
Actinomycetota
Streptomyces caatingaensis CMAA 1322 [LFXA]
67471
67398
-
Arg
ACG
[ENA]
¡û
>C161090270
CP015726
Actinomycetota
Streptomyces sp. RTd22 [CP015726]
5556726
5556653
-
Arg
ACG
-
¡û
>W1610053613
BBOX01000293
Actinomycetota
Streptomyces hygroscopicus subsp. hygroscopicus [BBOX]
6162
6235
+
Arg
ACG
[ENA]
¡û
>W1610054727
BBUZ01000022
Actinomycetota
Streptomyces sp. NBRC 110028 [BBUZ]
492531
492604
+
Arg
ACG
[ENA]
¡û
>W1610058981
BCAN01000069
Actinomycetota
Streptomyces hygroscopicus sporocinereus [BCAN]
73768
73695
-
Arg
ACG
[ENA]
¡û
>W1610633769
LIQY01000010
Actinomycetota
Streptomyces pathocidini [LIQY]
576
649
+
Arg
ACG
[ENA]
¡û
>W1610718799
LLZJ01000383
Actinomycetota
Streptomyces violaceusniger [LLZJ]
13112
13185
+
Arg
ACG
[ENA]
¡û
>W1610745798
LMWG01000224
Actinomycetota
Streptomyces albus subsp. albus [LMWG]
90356
90429
+
Arg
ACG
[ENA]
¡û
>W1610750225
LNBE01000004
Actinomycetota
Streptomyces roseifaciens MBT76 [LNBE]
1648598
1648671
+
Arg
ACG
[ENA]
¡û
>W1610750241
LNBE01000004
Actinomycetota
Streptomyces roseifaciens MBT76 [LNBE]
2216745
2216672
-
Arg
ACG
[ENA]
¡û
>W1610998060
LXIC01000005
Actinomycetota
Streptomyces sp. RTd22 [LXIC]
530360
530287
-
Arg
ACG
[ENA]
¡û
>W1710049991
BBOX01000293
Actinomycetota
Streptomyces hygroscopicus subsp. hygroscopicus [BBOX]
6162
6235
+
Arg
ACG
[ENA]
¡û
>W1710051426
BBUZ01000022
Actinomycetota
Streptomyces sp. NBRC 110028 [BBUZ]
492531
492604
+
Arg
ACG
[ENA]
¡û
>W1710055740
BCAN01000069
Actinomycetota
Streptomyces hygroscopicus sporocinereus [BCAN]
73768
73695
-
Arg
ACG
[ENA]
¡û
>W1710503426
FMDJ01000147
Actinomycetota
Streptomyces sp. MnatMP-M27 [FMDJ]
3688
3761
+
Arg
ACG
[ENA]
¡û
>W1710584404
FQVN01000001
Actinomycetota
Streptoalloteichus hindustanus [FQVN]
855616
855691
+
Arg
ACG
[ENA]
¡û
>W1710768201
LIQY01000010
Actinomycetota
Streptomyces pathocidini [LIQY]
576
649
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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