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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237691 (121 seq.)
>W1710921054
LNZF01000001
Bacillota
Paenibacillus polymyxa [LNZF]
942866
942940
+
Lys
CTT
[ENA]
¡û
>W131044572
AMQU01000004
Bacillota
Paenibacillus sp. ICGEB2008 [AMQU]
226372
226296
-
Lys
CTT
[ENA]
¡û
>W1711009875
LQQX01000148
Bacillota
Paenibacillus jamilae [LQQX]
92261
92185
-
Lys
CTT
[ENA]
¡û
>W1711113454
LTYJ01000003
Bacillota
Paenibacillus polymyxa [LTYJ]
167906
167830
-
Lys
CTT
[ENA]
¡û
>W1711147064
LVJH01000003
Bacillota
Paenibacillus glacialis [LVJH]
285400
285474
+
Lys
CTT
[ENA]
¡û
>W1711250305
LYMX01000106
Bacillota
Paenibacillus polymyxa [LYMX]
4014
3939
-
Lys
CTT
[ENA]
¡û
>W1711250331
LYMY01000119
Bacillota
Paenibacillus polymyxa [LYMY]
33870
33794
-
Lys
CTT
[ENA]
¡û
>W1711250621
LYND01000129
Bacillota
Paenibacillus polymyxa [LYND]
480900
480976
+
Lys
CTT
[ENA]
¡û
>W1711267529
LZCE01000023
Bacillota
Paenibacillus polymyxa [LZCE]
189568
189492
-
Lys
CTT
[ENA]
¡û
>W1711270710
LZEL01000095
Bacillota
Paenibacillus polymyxa [LZEL]
736
662
-
Lys
CTT
[ENA]
¡û
>W1711340438
MCBP01000001
Bacillota
Paenibacillus kribbensis [MCBP]
668409
668333
-
Lys
CTT
[ENA]
¡û
>W1711632781
MPTB01000012
Bacillota
Paenibacillus borealis [MPTB]
21311
21235
-
Lys
CTT
[ENA]
¡û
>W1711636505
MPVN01000001
Bacillota
Paenibacillus sp. FSL H7-0326 [MPVN]
853784
853712
-
Lys
CTT
[ENA]
¡û
>W1711676856
MRTC01000001
Bacillota
Paenibacillus peoriae [MRTC]
443595
443519
-
Lys
CTT
[ENA]
¡û
>W1711676977
MRTE01000006
Bacillota
Paenibacillus pabuli [MRTE]
16275
16199
-
Lys
CTT
[ENA]
¡û
>W1711677376
MRTM01000002
Bacillota
Paenibacillus peoriae [MRTM]
438650
438574
-
Lys
CTT
[ENA]
¡û
>W1711677449
MRTN01000001
Bacillota
Paenibacillus peoriae [MRTN]
471056
471132
+
Lys
CTT
[ENA]
¡û
>W1711677875
MRTU01000001
Bacillota
Paenibacillus peoriae [MRTU]
564419
564343
-
Lys
CTT
[ENA]
¡û
>W1711677927
MRTV01000001
Bacillota
Paenibacillus peoriae [MRTV]
635286
635210
-
Lys
CTT
[ENA]
¡û
>C171010568
CP011420
Bacillota
Paenibacillus polymyxa ATCC 15970 [CP011420]
1960669
1960745
+
Lys
CTT
-
¡û
>C171038792
CP015423
Bacillota
Paenibacillus polymyxa J [CP015423]
4705915
4705991
+
Lys
CTT
-
¡û
>C171070805
CP017967
Bacillota
Paenibacillus polymyxa YC0136 [CP017967]
1937946
1938022
+
Lys
CTT
-
¡û
>C171070900
CP017968
Bacillota
Paenibacillus polymyxa YC0573 [CP017968]
1949895
1949971
+
Lys
CTT
-
¡û
>W141022543
AJTY01000357
Bacillota
Paenibacillus sonchi X19-5 [AJTY]
18566
18642
+
Lys
CTT
[ENA]
¡û
>W141022565
AJTY01001311
Bacillota
Paenibacillus sonchi X19-5 [AJTY]
148
72
-
Lys
CTT
[ENA]
¡û
>W141034838
ALJV01000106
Bacillota
Paenibacillus polymyxa WLY78 [ALJV]
19414
19490
+
Lys
CTT
[ENA]
¡û
>W141073180
ASRY01000271
Bacillota
Paenibacillus maysiensis 1-49 [ASRY]
31776
31852
+
Lys
CTT
[ENA]
¡û
>W141073230
ASRZ01000121
Bacillota
Paenibacillus polymyxa 1-43 [ASRZ]
19440
19514
+
Lys
CTT
[ENA]
¡û
>W141073299
ASSA01000232
Bacillota
Paenibacillus polymyxa TD94 [ASSA]
2077
2001
-
Lys
CTT
[ENA]
¡û
>W141073310
ASSB01000007
Bacillota
Paenibacillus sp. 1-18 [ASSB]
47
123
+
Lys
CTT
[ENA]
¡û
>W141073371
ASSC01000335
Bacillota
Paenibacillus forsythiae T98 [ASSC]
4881
4805
-
Lys
CTT
[ENA]
¡û
>W141073375
ASSC01000447
Bacillota
Paenibacillus forsythiae T98 [ASSC]
30733
30659
-
Lys
CTT
[ENA]
¡û
>W141073505
ASSF01000100
Bacillota
Paenibacillus sophorae S27 [ASSF]
3982
3906
-
Lys
CTT
[ENA]
¡û
>W141073539
ASSF01000558
Bacillota
Paenibacillus sophorae S27 [ASSF]
36844
36770
-
Lys
CTT
[ENA]
¡û
>W141073576
ASSG01000056
Bacillota
Paenibacillus graminis RSA19 [ASSG]
10650
10574
-
Lys
CTT
[ENA]
¡û
>W141237097
BBIW01000001
Bacillota
Paenibacillus sp. TCA20 [BBIW]
471852
471780
-
Lys
CTT
[ENA]
¡û
>W141251598
CBQR020000163
Bacillota
Gorillibacterium massiliense G5 [CBQR]
1319
1395
+
Lys
CTT
[ENA]
¡û
>WENV183711954
PDWI01084453
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
739
664
-
Lys
CTT
[ENA]
¢þ
>C181029293
CP017967
Bacillota
Paenibacillus polymyxa YC0136 [CP017967]
1938368
1938444
+
Lys
CTT
-
¡û
>C181029388
CP017968
Bacillota
Paenibacillus polymyxa YC0573 [CP017968]
1950319
1950395
+
Lys
CTT
-
¡û
>C181043163
CP020028
Bacillota
Paenibacillus kribbensis AM49 [CP020028]
3809324
3809248
-
Lys
CTT
-
¡û
>C181121271
CP025696
Bacillota
Paenibacillus sp. lzh-N1 [CP025696]
5567770
5567696
-
Lys
CTT
-
¡û
>C181124439
CP025957
Bacillota
Paenibacillus polymyxa HY96-2 [CP025957]
1867131
1867207
+
Lys
CTT
-
¡û
>C191120111
CP034141
Bacillota
Paenibacillus sp. M-152 [CP034141]
1903640
1903714
+
Lys
CTT
-
¡û
>C191183143
CP040829
Bacillota
Paenibacillus polymyxa ZF129 [CP040829]
5684046
5683970
-
Lys
CTT
-
¡û
>W141699870
JMIQ01000001
Bacillota
Paenibacillus polymyxa [JMIQ]
737298
737374
+
Lys
CTT
[ENA]
¡û
>W141702719
JMLR01000003
Bacillota
Paenibacillus sp. UNCCL52 [JMLR]
429951
429875
-
Lys
CTT
[ENA]
¡û
>W141726827
JNCB01000011
Bacillota
Paenibacillus polymyxa [JNCB]
716223
716299
+
Lys
CTT
[ENA]
¡û
>C141010928
CP006941
Bacillota
Paenibacillus polymyxa CR1 [CP006941]
1863349
1863425
+
Lys
CTT
-
¡û
>W1911118561
NOLA01000001
Bacillota
Paenibacillus polymyxa LY214 [NOLA]
429209
429133
-
Lys
CTT
[ENA]
¡û
>W1911495934
OBQL01000023
Bacillota
Paenibacillus sp. RU26A [OBQL]
61863
61938
+
Lys
CTT
[ENA]
¡û
>W1911496021
OBQM01000023
Bacillota
Paenibacillus sp. RU5M [OBQM]
61863
61938
+
Lys
CTT
[ENA]
¡û
>W1911551698
OXKC01000001
Bacillota
Paenibacillus polymyxa [OXKC]
661219
661143
-
Lys
CTT
[ENA]
¡û
>W1911608577
PNXP01000014
Bacillota
Paenibacillus polymyxa PIC73 [PNXP]
76207
76281
+
Lys
CTT
[ENA]
¡û
>W1911608652
PNXQ01000014
Bacillota
Paenibacillus terrae PIC167 [PNXQ]
50083
50159
+
Lys
CTT
[ENA]
¡û
>W1810076258
PEII01000001
Bacillota
Paenibacillus sp. LK1 [PEII]
807045
806970
-
Lys
CTT
[ENA]
¡û
>W1810225393
POVS01000009
Bacillota
Paenibacillus sp. F4 [POVS]
587803
587727
-
Lys
CTT
[ENA]
¡û
>W1810225493
POVT01000009
Bacillota
Paenibacillus polymyxa KCCM 40454 [POVT]
267597
267673
+
Lys
CTT
[ENA]
¡û
>W1810296647
PTJM01000045
Bacillota
Paenibacillus peoriae IBSD35 [PTJM]
125760
125836
+
Lys
CTT
[ENA]
¡û
>W1810476628
QAOE01000004
Bacillota
Paenibacillus polymyxa KP10 [QAOE]
539695
539619
-
Lys
CTT
[ENA]
¡û
>W1810836251
QSRT01000020
Bacillota
Paenibacillus polymyxa TF07-21-d [QSRT]
35632
35556
-
Lys
CTT
[ENA]
¡û
>W1810914527
QVPU01000008
Bacillota
Paenibacillus jamilae KACC 10925 [QVPU]
191985
191909
-
Lys
CTT
[ENA]
¡û
>C151005575
CP004078
Bacillota
Paenibacillus sabinae T27 [CP004078]
1948179
1948253
+
Lys
CTT
[Ensembl]
¡û
>C151013754
CP006872
Bacillota
Paenibacillus polymyxa SQR-21 SQR21 [CP006872]
1916646
1916722
+
Lys
CTT
[Ensembl]
¡û
>C151046405
CP009241
Bacillota
Paenibacillus sp. FSL H7-0357 [CP009241]
2613950
2614026
+
Lys
CTT
[Ensembl]
¡û
>C151048145
CP009287
Bacillota
Paenibacillus graminis DSM 15220 [CP009287]
2605129
2605205
+
Lys
CTT
[Ensembl]
¡û
>C151065042
CP010268
Bacillota
Paenibacillus polymyxa Sb3-1 [CP010268]
888331
888257
-
Lys
CTT
[Ensembl]
¡û
>C151083755
CP011512
Bacillota
Paenibacillus peoriae HS311 [CP011512]
1924916
1924992
+
Lys
CTT
-
¡û
>C151104399
LN831776
Bacillota
Paenibacillus riograndensis SBR5 [LN831776]
2891526
2891602
+
Lys
CTT
[Ensembl]
¡û
>C151104400
LN831776
Bacillota
Paenibacillus riograndensis SBR5 [LN831776]
2914537
2914613
+
Lys
CTT
[Ensembl]
¡û
>C10110338
CP000154
Bacillota
Paenibacillus polymyxa E681 [CP000154]
1712480
1712556
+
Lys
CTT
[Ensembl]
¡û
>W1510647555
CVPD01000001
Bacillota
Paenibacillus sp. Mc5Re-14 [CVPD]
663862
663788
-
Lys
CTT
[ENA]
¡û
>C11117569
HE577054
Bacillota
Paenibacillus polymyxa M1 [HE577054]
1876523
1876597
+
Lys
CTT
[Ensembl]
¡û
>C11117678
CP002213
Bacillota
Paenibacillus polymyxa SC2 [CP002213]
1876434
1876508
+
Lys
CTT
[Ensembl]
¡û
>W1511320834
JQCR01000003
Bacillota
Paenibacillus wynnii DSM 18334 [JQCR]
92811
92887
+
Lys
CTT
[ENA]
¡û
>W1511401372
JTHO01000002
Bacillota
Paenibacillus polymyxa NRRL B-30509 [JTHO]
62328
62404
+
Lys
CTT
[ENA]
¡û
>W1511401500
JTHP01000032
Bacillota
Paenibacillus terrae NRRL B-30644 [JTHP]
14156
14232
+
Lys
CTT
[ENA]
¡û
>W1511480738
JWJJ01000002
Bacillota
Paenibacillus polymyxa A18 [JWJJ]
981915
981991
+
Lys
CTT
[ENA]
¡û
>W1511523903
JYCW01000001
Bacillota
Paenibacillus polymyxa EBL06 [JYCW]
546547
546471
-
Lys
CTT
[ENA]
¡û
>W11169775
AFOX01000017
Bacillota
Paenibacillus polymyxa ATCC 842 [AFOX]
519416
519492
+
Lys
CTT
[ENA]
¡û
>W11177626
AGBD01000119
Bacillota
Paenibacillus riograndensis SBR5 [AGBD]
323
399
+
Lys
CTT
[ENA]
¡û
>W11177634
AGBD01000515
Bacillota
Paenibacillus riograndensis SBR5 [AGBD]
284
208
-
Lys
CTT
[ENA]
¡û
>C121005869
CP003107
Bacillota
Paenibacillus terrae HPL-003 [CP003107]
3498399
3498475
+
Lys
CTT
[Ensembl]
¡û
>C161022639
CP009909
Bacillota
Paenibacillus polymyxa CF05 [CP009909]
4876697
4876773
+
Lys
CTT
[Ensembl]
¡û
>C161053041
CP013203
Bacillota
Paenibacillus sp. IHB B 3084 [CP013203]
653733
653657
-
Lys
CTT
-
¡û
>W121009640
AGFI01000116
Bacillota
Paenibacillus sp. Aloe-11 [AGFI]
18667
18743
+
Lys
CTT
[ENA]
¡û
>W121009956
AGFX01000041
Bacillota
Paenibacillus peoriae KCTC 3763 [AGFX]
210093
210017
-
Lys
CTT
[ENA]
¡û
>W121059952
AIPP01000128
Bacillota
Paenibacillus polymyxa OSY-DF [AIPP]
77067
77143
+
Lys
TTT
[ENA]
¡û
>W1610591021
LDRX01000050
Bacillota
Paenibacillus jamilae [LDRX]
17423
17349
-
Lys
CTT
[ENA]
¡û
>W1610616753
LGRP01000048
Bacillota
Paenibacillus sp. O199 [LGRP]
28473
28549
+
Lys
CTT
[ENA]
¡û
>W1610632625
LIPY01000122
Bacillota
Paenibacillus jilunlii [LIPY]
84154
84230
+
Lys
CTT
[ENA]
¡û
>W1610632626
LIPY01000122
Bacillota
Paenibacillus jilunlii [LIPY]
111316
111392
+
Lys
CTT
[ENA]
¡û
>W1610633919
LIRA01001765
Bacillota
Paenibacillus riograndensis [LIRA]
428
352
-
Lys
CTT
[ENA]
¡û
>W1610633955
LIRB01000121
Bacillota
Paenibacillus riograndensis [LIRB]
67492
67568
+
Lys
CTT
[ENA]
¡û
>W1610633956
LIRB01000121
Bacillota
Paenibacillus riograndensis [LIRB]
87921
87997
+
Lys
CTT
[ENA]
¡û
>W1610778952
LNZF01000001
Bacillota
Paenibacillus polymyxa [LNZF]
942866
942940
+
Lys
CTT
[ENA]
¡û
>W1610858395
LQQX01000148
Bacillota
Paenibacillus jamilae [LQQX]
92261
92185
-
Lys
CTT
[ENA]
¡û
>W1610926506
LTYJ01000003
Bacillota
Paenibacillus polymyxa [LTYJ]
167906
167830
-
Lys
CTT
[ENA]
¡û
>W1610957961
LVJH01000003
Bacillota
Paenibacillus glacialis [LVJH]
285400
285474
+
Lys
CTT
[ENA]
¡û
>W1611028722
LZCE01000023
Bacillota
Paenibacillus polymyxa [LZCE]
189568
189492
-
Lys
CTT
[ENA]
¡û
>W1611030274
LZEL01000095
Bacillota
Paenibacillus polymyxa [LZEL]
736
662
-
Lys
CTT
[ENA]
¡û
>W1710520552
FNFR01000007
Bacillota
Paenibacillus sp. OK060 [FNFR]
370181
370257
+
Lys
CTT
[ENA]
¡û
>W1710521533
FNGM01000001
Bacillota
Paenibacillus jilunlii [FNGM]
84281
84357
+
Lys
CTT
[ENA]
¡û
>W1710521534
FNGM01000001
Bacillota
Paenibacillus jilunlii [FNGM]
111443
111519
+
Lys
CTT
[ENA]
¡û
>W1710529070
FNNT01000001
Bacillota
Paenibacillus sp. PDC88 [FNNT]
820983
820911
-
Lys
CTT
[ENA]
¡û
>W1710534159
FNRR01000002
Bacillota
Paenibacillus sp. 276b [FNRR]
1129109
1129185
+
Lys
CTT
[ENA]
¡û
>W1710542098
FNYX01000001
Bacillota
Paenibacillus polymyxa 181mfcol5.1 [FNYX]
551517
551443
-
Lys
CTT
[ENA]
¡û
>W1710547815
FODH01000005
Bacillota
Paenibacillus sophorae [FODH]
339031
339105
+
Lys
CTT
[ENA]
¡û
>W1710547834
FODH01000010
Bacillota
Paenibacillus sophorae [FODH]
88498
88422
-
Lys
CTT
[ENA]
¡û
>W1710554381
FOIK01000001
Bacillota
Paenibacillus sp. NFR01 [FOIK]
201723
201799
+
Lys
CTT
[ENA]
¡û
>W1710574418
FOYG01000001
Bacillota
Paenibacillus sp. cl130 [FOYG]
643876
643800
-
Lys
CTT
[ENA]
¡û
>W1710576516
FPAC01000001
Bacillota
Paenibacillus sp. 453mf [FPAC]
759203
759275
+
Lys
CTT
[ENA]
¡û
>W1710593574
FRDO01000003
Bacillota
Paenibacillus sp. ov031 [FRDO]
357
281
-
Lys
CTT
[ENA]
¡û
>W1710604903
FVZJ01000023
Bacillota
Paenibacillus sp. RU5A [FVZJ]
61863
61939
+
Lys
CTT
[ENA]
¡û
>W1710710301
LDRX01000050
Bacillota
Paenibacillus jamilae [LDRX]
17423
17349
-
Lys
CTT
[ENA]
¡û
>W1710742092
LGRP01000048
Bacillota
Paenibacillus sp. O199 [LGRP]
28473
28549
+
Lys
CTT
[ENA]
¡û
>W1710767011
LIPY01000122
Bacillota
Paenibacillus jilunlii [LIPY]
84154
84230
+
Lys
CTT
[ENA]
¡û
>W1710767012
LIPY01000122
Bacillota
Paenibacillus jilunlii [LIPY]
111316
111392
+
Lys
CTT
[ENA]
¡û
>W1710768351
LIRA01001765
Bacillota
Paenibacillus riograndensis [LIRA]
428
352
-
Lys
CTT
[ENA]
¡û
>W1710768387
LIRB01000121
Bacillota
Paenibacillus riograndensis [LIRB]
67492
67568
+
Lys
CTT
[ENA]
¡û
>W1710768388
LIRB01000121
Bacillota
Paenibacillus riograndensis [LIRB]
87921
87997
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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