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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237699 (26 seq.)
>W1710926990
LOEW01000129
Bacillota
Desulfosporosinus sp. BRH_c37 [LOEW]
7870
7945
+
Lys
CTT
[ENA]
¡û
>W1711312227
MASS01000003
Bacillota
Desulfosporosinus sp. BG [MASS]
16334
16259
-
Lys
CTT
[ENA]
¡û
>W1711510567
MLBF01000002
Bacillota
Desulfosporosinus metallidurans OL [MLBF]
12739
12664
-
Lys
CTT
[ENA]
¡û
>W1711926261
NADJ01000012
Bacillota
Desulfosporosinus sp. FKB [NADJ]
100170
100095
-
Lys
CTT
[ENA]
¡û
>WENV180254124
OBEQ010604163
[OBEQ] groundwater metagenome; groundwater
216
141
-
Lys
CTT
[ENA]
¢þ
>WENV183672002
ORJL011124944
[ORJL] groundwater metagenome; groundwater
1048
973
-
Lys
CTT
[ENA]
¢þ
>WENV170658765
JUEG02000284
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
7365
7440
+
Lys
CTT
[ENA]
¢þ
>W1810047193
OMOF01000412
Bacillota
Candidatus Desulfosporosinus infrequens SbF1 Peat soil MAG SbF1 [OMOF]
2542
2467
-
Lys
CTT
[ENA]
¡û
>W1511430050
JUEE01000098
Bacillota
Desulfosporosinus sp. BICA1-9 [JUEE]
7241
7166
-
Lys
CTT
[ENA]
¡û
>W1511430059
JUEE01000139
Bacillota
Desulfosporosinus sp. BICA1-9 [JUEE]
555
630
+
Lys
CTT
[ENA]
¡û
>W1511533681
JYNH01000054
Bacillota
Desulfosporosinus sp. I2 [JYNH]
20765
20690
-
Lys
CTT
[ENA]
¡û
>W1511564572
LADV01000241
Bacillota
Peptococcaceae bacterium BRH_c23 [LADV]
720
645
-
Lys
CTT
[ENA]
¡û
>W11177251
AGAF01000059
Bacillota
Desulfosporosinus sp. OT [AGAF]
20495
20570
+
Lys
CTT
[ENA]
¡û
>W11177255
AGAF01000085
Bacillota
Desulfosporosinus sp. OT [AGAF]
38982
39057
+
Lys
CTT
[ENA]
¡û
>W11181333
AGJA01000002
Bacillota
Desulfosporosinus meridiei DSM 13257 [AGJA]
268141
268216
+
Lys
CTT
[ENA]
¡û
>W11181338
AGJA01000005
Bacillota
Desulfosporosinus meridiei DSM 13257 [AGJA]
279224
279299
+
Lys
CTT
[ENA]
¡û
>C121005971
CP003108
Bacillota
Desulfosporosinus orientis DSM 765 [CP003108]
4662046
4661971
-
Lys
CTT
[Ensembl]
¡û
>C121005985
CP003108
Bacillota
Desulfosporosinus orientis DSM 765 [CP003108]
3354916
3354841
-
Lys
CTT
[Ensembl]
¡û
>C121014817
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
3393904
3393829
-
Lys
CTT
[Ensembl]
¡û
>C121014831
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
2630428
2630353
-
Lys
CTT
[Ensembl]
¡û
>W121010336
AGJE01000001
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [AGJE]
684360
684285
-
Lys
CTT
[ENA]
¡û
>W121036159
AHLV01000002
Bacillota
Desulfosporosinus youngiae DSM 17734 [AHLV]
1448289
1448214
-
Lys
CTT
[ENA]
¡û
>C131003229
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
878752
878827
+
Lys
CTT
[Ensembl]
¡û
>W1610784532
LOEW01000129
Bacillota
Desulfosporosinus sp. BRH_c37 [LOEW]
7870
7945
+
Lys
CTT
[ENA]
¡û
>W1710516469
FNCP01000010
Bacillota
Desulfosporosinus hippei DSM 8344 [FNCP]
66671
66596
-
Lys
CTT
[ENA]
¡û
>W1710586643
FQXJ01000005
Bacillota
Desulfosporosinus lacus DSM 15449 [FQXJ]
71719
71644
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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