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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237705 (102 seq.)
>W1710891819
LNDB01000017
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
2908
2983
+
Asp
GTC
[ENA]
¡û
>W1710891827
LNDB01000020
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
1400
1325
-
Asp
GTC
[ENA]
¡û
>W1710923796
LOCK01000016
Bacillota
Desulfitobacterium hafniense [LOCK]
19535
19610
+
Asp
GTC
[ENA]
¡û
>W1710923820
LOCK01000048
Bacillota
Desulfitobacterium hafniense [LOCK]
1166
1091
-
Asp
GTC
[ENA]
¡û
>W1710927086
LOEZ01000034
Bacillota
Gracilibacter sp. BRH_c7a [LOEZ]
5549
5624
+
Asp
GTC
[ENA]
¡û
>W1710927106
LOEZ01000081
Bacillota
Gracilibacter sp. BRH_c7a [LOEZ]
37185
37110
-
Asp
GTC
[ENA]
¡û
>W1711312261
MASS01000046
Bacillota
Desulfosporosinus sp. BG [MASS]
977
1052
+
Asp
GTC
[ENA]
¡û
>W1711312267
MASS01000047
Bacillota
Desulfosporosinus sp. BG [MASS]
31149
31074
-
Asp
GTC
[ENA]
¡û
>W1711312276
MASS01000098
Bacillota
Desulfosporosinus sp. BG [MASS]
5568
5643
+
Asp
GTC
[ENA]
¡û
>W1711510579
MLBF01000054
Bacillota
Desulfosporosinus metallidurans OL [MLBF]
2288
2363
+
Asp
GTC
[ENA]
¡û
>W1711510587
MLBF01000097
Bacillota
Desulfosporosinus metallidurans OL [MLBF]
5137
5212
+
Asp
GTC
[ENA]
¡û
>W1711926239
NADJ01000002
Bacillota
Desulfosporosinus sp. FKB [NADJ]
4609
4684
+
Asp
GTC
[ENA]
¡û
>W1711926247
NADJ01000003
Bacillota
Desulfosporosinus sp. FKB [NADJ]
5851
5926
+
Asp
GTC
[ENA]
¡û
>W1711932724
NAHZ01000006
Bacillota
Desulfosporosinus sp. FKA [NAHZ]
25222
25147
-
Asp
GTC
[ENA]
¡û
>W1711932733
NAHZ01000019
Bacillota
Desulfosporosinus sp. FKA [NAHZ]
1939
1864
-
Asp
GTC
[ENA]
¡û
>W131162727
AQZD01000013
Bacillota
Desulfitobacterium hafniense TCP-A [AQZD]
3617
3542
-
Asp
GTC
[ENA]
¡û
>W131162748
AQZD01000021
Bacillota
Desulfitobacterium hafniense TCP-A [AQZD]
63748
63673
-
Asp
GTC
[ENA]
¡û
>W131162808
AQZF01000003
Bacillota
Desulfitobacterium sp. PCE1 [AQZF]
19461
19536
+
Asp
GTC
[ENA]
¡û
>W131164669
ARAZ01000016
Bacillota
Desulfitobacterium hafniense PCP-1 [ARAZ]
15651
15576
-
Asp
GTC
[ENA]
¡û
>W131164686
ARAZ01000026
Bacillota
Desulfitobacterium hafniense PCP-1 [ARAZ]
60777
60702
-
Asp
GTC
[ENA]
¡û
>C007773
AP008230
Bacillota
Desulfitobacterium hafniense Y51 [AP008230]
261755
261830
+
Asp
GTC
[Ensembl]
¡û
>C007789
AP008230
Bacillota
Desulfitobacterium hafniense Y51 [AP008230]
1722961
1723036
+
Asp
GTC
[Ensembl]
¡û
>WENV180257553
OBEQ010920784
[OBEQ] groundwater metagenome; groundwater
304
379
+
Asp
GTC
[ENA]
¢þ
>WENV180347082
OBLN01548959
[OBLN] sediment metagenome; sediment
78
3
-
Asp
GTC
[ENA]
¢þ
>w002196
AAAW04000006
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
69110
69038
-
Asp
GTC
[ENA]
¡û
>w002181
AAAW04000006
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
72261
72189
-
Asp
GTC
[ENA]
¡û
>w002163
AAAW04000003
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
381967
381895
-
Asp
GTC
[ENA]
¡û
>WENV183673245
ORJL011259091
[ORJL] groundwater metagenome; groundwater
244
169
-
Asp
GTC
[ENA]
¢þ
>WENV170658845
JUEG02001194
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
28002
27927
-
Asp
GTC
[ENA]
¢þ
>WENV170658854
JUEG02001262
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
2569
2494
-
Asp
GTC
[ENA]
¢þ
>WENV170658880
JUEG02001273
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
3004
3079
+
Asp
GTC
[ENA]
¢þ
>WENV170658885
JUEG02001293
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
21815
21890
+
Asp
GTC
[ENA]
¢þ
>C181016550
CP014606
Bacillota
endosymbiont 'TC1' of Trimyema compressum [CP014606]
994460
994385
-
Asp
GTC
-
¡û
>C09103969
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
196685
196760
+
Asp
GTC
[Ensembl]
¡û
>C09103985
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
2797640
2797715
+
Asp
GTC
[Ensembl]
¡û
>C09104000
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
2800791
2800866
+
Asp
GTC
[Ensembl]
¡û
>W1810047154
OMOF01000012
Bacillota
Candidatus Desulfosporosinus infrequens SbF1 Peat soil MAG SbF1 [OMOF]
4467
4542
+
Asp
GTC
[ENA]
¡û
>W1810047197
OMOF01000956
Bacillota
Candidatus Desulfosporosinus infrequens SbF1 Peat soil MAG SbF1 [OMOF]
1848
1773
-
Asp
GTC
[ENA]
¡û
>W1511187124
JMGA01000040
Bacillota
Desulfosporosinus sp. HMP52 [JMGA]
27223
27148
-
Asp
GTC
[ENA]
¡û
>W1511187138
JMGA01000060
Bacillota
Desulfosporosinus sp. HMP52 [JMGA]
746
821
+
Asp
GTC
[ENA]
¡û
>W1511187144
JMGA01000078
Bacillota
Desulfosporosinus sp. HMP52 [JMGA]
21644
21719
+
Asp
GTC
[ENA]
¡û
>W1511187157
JMGA01000080
Bacillota
Desulfosporosinus sp. HMP52 [JMGA]
422
497
+
Asp
GTC
[ENA]
¡û
>W1511327352
JQID01000098
Bacillota
Desulfosporosinus sp. Tol-M [JQID]
3536
3461
-
Asp
GTC
[ENA]
¡û
>W1511327367
JQID01000107
Bacillota
Desulfosporosinus sp. Tol-M [JQID]
2271
2346
+
Asp
GTC
[ENA]
¡û
>C11120614
CP002547
Bacillota
Syntrophobotulus glycolicus DSM 8271 [CP002547]
252478
252553
+
Asp
GTC
[Ensembl]
¡û
>C11120644
CP002547
Bacillota
Syntrophobotulus glycolicus DSM 8271 [CP002547]
2270744
2270669
-
Asp
GTC
[Ensembl]
¡û
>W1511430041
JUEE01000068
Bacillota
Desulfosporosinus sp. BICA1-9 [JUEE]
377
302
-
Asp
GTC
[ENA]
¡û
>W1511430062
JUEE01000168
Bacillota
Desulfosporosinus sp. BICA1-9 [JUEE]
26602
26527
-
Asp
GTC
[ENA]
¡û
>W1511533686
JYNH01000095
Bacillota
Desulfosporosinus sp. I2 [JYNH]
4539
4614
+
Asp
GTC
[ENA]
¡û
>W1511533694
JYNH01000154
Bacillota
Desulfosporosinus sp. I2 [JYNH]
9029
9104
+
Asp
GTC
[ENA]
¡û
>W1511646029
LDZY01000021
Bacillota
Desulfosporosinus acididurans M1 [LDZY]
3576
3651
+
Asp
GTC
[ENA]
¡û
>W1511646037
LDZY01000036
Bacillota
Desulfosporosinus acididurans M1 [LDZY]
4612
4687
+
Asp
GTC
[ENA]
¡û
>W11177273
AGAF01000180
Bacillota
Desulfosporosinus sp. OT [AGAF]
965
1040
+
Asp
GTC
[ENA]
¡û
>W11177284
AGAF01000222
Bacillota
Desulfosporosinus sp. OT [AGAF]
23264
23189
-
Asp
GTC
[ENA]
¡û
>W11177293
AGAF01000251
Bacillota
Desulfosporosinus sp. OT [AGAF]
2011
1936
-
Asp
GTC
[ENA]
¡û
>W11181321
AGJA01000001
Bacillota
Desulfosporosinus meridiei DSM 13257 [AGJA]
112383
112308
-
Asp
GTC
[ENA]
¡û
>W11181356
AGJA01000014
Bacillota
Desulfosporosinus meridiei DSM 13257 [AGJA]
649
724
+
Asp
GTC
[ENA]
¡û
>W11181361
AGJA01000015
Bacillota
Desulfosporosinus meridiei DSM 13257 [AGJA]
5013
5088
+
Asp
GTC
[ENA]
¡û
>W11181369
AGJA01000017
Bacillota
Desulfosporosinus meridiei DSM 13257 [AGJA]
2309
2234
-
Asp
GTC
[ENA]
¡û
>C121005927
CP003108
Bacillota
Desulfosporosinus orientis DSM 765 [CP003108]
107821
107896
+
Asp
GTC
[Ensembl]
¡û
>C121005942
CP003108
Bacillota
Desulfosporosinus orientis DSM 765 [CP003108]
117819
117894
+
Asp
GTC
[Ensembl]
¡û
>C121005979
CP003108
Bacillota
Desulfosporosinus orientis DSM 765 [CP003108]
3773647
3773572
-
Asp
GTC
[Ensembl]
¡û
>C121011409
CP003348
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [CP003348]
161248
161323
+
Asp
GTC
[Ensembl]
¡û
>C121011426
CP003348
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [CP003348]
2106658
2106733
+
Asp
GTC
[Ensembl]
¡û
>C121011441
CP003348
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [CP003348]
2108320
2108395
+
Asp
GTC
[Ensembl]
¡û
>C121014768
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
101815
101890
+
Asp
GTC
[Ensembl]
¡û
>C121014781
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
112473
112548
+
Asp
GTC
[Ensembl]
¡û
>C121014796
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
1636396
1636471
+
Asp
GTC
[Ensembl]
¡û
>C121014819
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
3015425
3015350
-
Asp
GTC
[Ensembl]
¡û
>C121014844
CP003639
Bacillota
Desulfosporosinus acidiphilus SJ4 [CP003639]
103148
103223
+
Asp
GTC
[Ensembl]
¡û
>C121014859
CP003639
Bacillota
Desulfosporosinus acidiphilus SJ4 [CP003639]
114055
114130
+
Asp
GTC
[Ensembl]
¡û
>C121014886
CP003639
Bacillota
Desulfosporosinus acidiphilus SJ4 [CP003639]
2952799
2952724
-
Asp
GTC
[Ensembl]
¡û
>W121007254
AFZX01000006
Bacillota
Desulfitobacterium hafniense DP7 [AFZX]
4169
4244
+
Asp
GTC
[ENA]
¡û
>W121010358
AGJE01000013
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [AGJE]
83303
83228
-
Asp
GTC
[ENA]
¡û
>W121010368
AGJE01000018
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [AGJE]
2267
2342
+
Asp
GTC
[ENA]
¡û
>W121010462
AGJG01000012
Bacillota
Desulfosporosinus acidiphilus SJ4 [AGJG]
133950
133875
-
Asp
GTC
[ENA]
¡û
>W121010475
AGJG01000031
Bacillota
Desulfosporosinus acidiphilus SJ4 [AGJG]
42570
42495
-
Asp
GTC
[ENA]
¡û
>W121010487
AGJG01000050
Bacillota
Desulfosporosinus acidiphilus SJ4 [AGJG]
2924
2999
+
Asp
GTC
[ENA]
¡û
>W121010529
AGJH01000017
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [AGJH]
58728
58653
-
Asp
GTC
[ENA]
¡û
>W121010546
AGJH01000057
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [AGJH]
1308
1233
-
Asp
GTC
[ENA]
¡û
>W121036117
AHLV01000001
Bacillota
Desulfosporosinus youngiae DSM 17734 [AHLV]
124204
124279
+
Asp
GTC
[ENA]
¡û
>W121036131
AHLV01000001
Bacillota
Desulfosporosinus youngiae DSM 17734 [AHLV]
134846
134921
+
Asp
GTC
[ENA]
¡û
>W121036156
AHLV01000002
Bacillota
Desulfosporosinus youngiae DSM 17734 [AHLV]
1926089
1926014
-
Asp
GTC
[ENA]
¡û
>W121036160
AHLV01000002
Bacillota
Desulfosporosinus youngiae DSM 17734 [AHLV]
1197474
1197399
-
Asp
GTC
[ENA]
¡û
>C131003218
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
113696
113771
+
Asp
GTC
[Ensembl]
¡û
>C131003233
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
1739570
1739645
+
Asp
GTC
[Ensembl]
¡û
>C131003249
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
1805032
1805107
+
Asp
GTC
[Ensembl]
¡û
>W1610752184
LNDB01000017
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
2908
2983
+
Asp
GTC
[ENA]
¡û
>W1610752192
LNDB01000020
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
1400
1325
-
Asp
GTC
[ENA]
¡û
>W1610781397
LOCK01000016
Bacillota
Desulfitobacterium hafniense [LOCK]
19535
19610
+
Asp
GTC
[ENA]
¡û
>W1610781421
LOCK01000048
Bacillota
Desulfitobacterium hafniense [LOCK]
1166
1091
-
Asp
GTC
[ENA]
¡û
>W1610784628
LOEZ01000034
Bacillota
Gracilibacter sp. BRH_c7a [LOEZ]
5549
5624
+
Asp
GTC
[ENA]
¡û
>W1610784648
LOEZ01000081
Bacillota
Gracilibacter sp. BRH_c7a [LOEZ]
37185
37110
-
Asp
GTC
[ENA]
¡û
>W1710516483
FNCP01000032
Bacillota
Desulfosporosinus hippei DSM 8344 [FNCP]
49301
49226
-
Asp
GTC
[ENA]
¡û
>W1710516498
FNCP01000038
Bacillota
Desulfosporosinus hippei DSM 8344 [FNCP]
3805
3880
+
Asp
GTC
[ENA]
¡û
>W1710516506
FNCP01000054
Bacillota
Desulfosporosinus hippei DSM 8344 [FNCP]
2273
2198
-
Asp
GTC
[ENA]
¡û
>W1710586648
FQXJ01000018
Bacillota
Desulfosporosinus lacus DSM 15449 [FQXJ]
28633
28708
+
Asp
GTC
[ENA]
¡û
>W1710586667
FQXJ01000032
Bacillota
Desulfosporosinus lacus DSM 15449 [FQXJ]
40133
40208
+
Asp
GTC
[ENA]
¡û
>W1710586671
FQXJ01000036
Bacillota
Desulfosporosinus lacus DSM 15449 [FQXJ]
27772
27697
-
Asp
GTC
[ENA]
¡û
>W1710593527
FRDN01000013
Bacillota
Desulfitobacterium chlororespirans DSM 11544 [FRDN]
213
138
-
Asp
GTC
[ENA]
¡û
>W1710593535
FRDN01000020
Bacillota
Desulfitobacterium chlororespirans DSM 11544 [FRDN]
6169
6244
+
Asp
GTC
[ENA]
¡û
>W1710593542
FRDN01000021
Bacillota
Desulfitobacterium chlororespirans DSM 11544 [FRDN]
81524
81449
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK