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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23772 (20 seq.)
>W1711434403
MIMZ01000006
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
40514
40425
-
Leu
GAG
[ENA]
¡û
>C171101785
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
2634999
2635088
+
Leu
GAG
-
¡û
>WENV180149175
OAUK01024758
[OAUK] human gut metagenome; faeces
154
243
+
Leu
GAG
[ENA]
¢þ
>WENV180176726
OAWD01000716
[OAWD] human gut metagenome; faeces
14854
14765
-
Leu
GAG
[ENA]
¢þ
>WENV180498547
OCAG01000396
[OCAG] human gut metagenome; faeces
21696
21607
-
Leu
GAG
[ENA]
¢þ
>WENV180504426
OCAN01002674
[OCAN] human gut metagenome; faeces
719
808
+
Leu
GAG
[ENA]
¢þ
>WENV181346019
OFML01002891
[OFML] human gut metagenome; human gut
6973
6884
-
Leu
GAG
[ENA]
¢þ
>WENV182403091
OIET01000702
[OIET] human gut metagenome; human gut
8224
8313
+
Leu
GAG
[ENA]
¢þ
>WENV182405463
OIEV01005065
[OIEV] human gut metagenome; human gut
263
174
-
Leu
GAG
[ENA]
¢þ
>WENV182836550
OKFX01004458
[OKFX] human gut metagenome; human gut
1293
1204
-
Leu
GAG
[ENA]
¢þ
>C191064411
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
3760750
3760839
+
Leu
GAG
-
¡û
>C191219486
LR215983
Bacillota
Eubacterium limosum [LR215983]
251150
251239
+
Leu
GAG
-
¡û
>W1810609733
QGUD01000001
Bacillota
Eubacterium limosum 8486cho [QGUD]
37506
37417
-
Leu
GAG
[ENA]
¡û
>W1810871731
QUDF01000007
Bacillota
Eubacterium sp. AM05-23 [QUDF]
238418
238507
+
Leu
GAG
[ENA]
¡û
>C11108804
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
903521
903610
+
Leu
GAG
[Ensembl]
¡û
>W1511480176
JWIS01000018
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
37364
37275
-
Leu
GAG
[ENA]
¡û
>C161037798
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
3290145
3290056
-
Leu
GAG
[Ensembl]
¡û
>W1710525048
FNJF01000028
Bacillota
Eubacterium maltosivorans limosum [FNJF]
36570
36481
-
Leu
GAG
[ENA]
¡û
>W1710571955
FOWI01000001
Bacillota
Eubacterium callanderi [FOWI]
681465
681554
+
Leu
GAG
[ENA]
¡û
>W1710591297
FRBP01000009
Bacillota
Eubacterium callanderi [FRBP]
180561
180650
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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