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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23774 (46 seq.)
>W1710855736
LLYZ01000012
Bacteroidota
Chryseobacterium aquaticum [LLYZ]
526
439
-
Ser
GCT
[ENA]
¡û
>W1710857442
LMAH01000002
Bacteroidota
Chryseobacterium sp. JAH [LMAH]
690985
691072
+
Ser
GCT
[ENA]
¡û
>W1710857509
LMAI01000004
Bacteroidota
Chryseobacterium aquaticum greenlandense [LMAI]
101785
101872
+
Ser
GCT
[ENA]
¡û
>W1710876612
LMPJ01000009
Bacteroidota
Chryseobacterium sp. Leaf180 [LMPJ]
279976
280063
+
Ser
GCT
[ENA]
¡û
>W1710877669
LMQH01000011
Bacteroidota
Chryseobacterium sp. Leaf394 [LMQH]
2284431
2284518
+
Ser
GCT
[ENA]
¡û
>W1710877870
LMQM01000003
Bacteroidota
Chryseobacterium sp. Leaf404 [LMQM]
99601
99688
+
Ser
GCT
[ENA]
¡û
>W1710877939
LMQN01000012
Bacteroidota
Chryseobacterium sp. Leaf405 [LMQN]
442859
442772
-
Ser
GCT
[ENA]
¡û
>WENV183726289
PJQF01149374
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
88
175
+
Ser
GCT
[ENA]
¢þ
>C181061636
CP022282
Bacteroidota
Chryseobacterium sp. T16E-39 [CP022282]
4332971
4332884
-
Ser
GCT
-
¡û
>C191099949
CP033070
Bacteroidota
Chryseobacterium sp. 3008163 [CP033070]
3599863
3599776
-
Ser
GCT
-
¡û
>C191116056
CP033928
Bacteroidota
Chryseobacterium indoltheticum G0211 [CP033928]
1399873
1399960
+
Ser
GCT
-
¡û
>C191116167
CP033929
Bacteroidota
Chryseobacterium indoltheticum ATCC 27950 [CP033929]
1626334
1626247
-
Ser
GCT
-
¡û
>C191116511
CP033934
Bacteroidota
Chryseobacterium balustinum KC_1863 [CP033934]
2913592
2913679
+
Ser
GCT
-
¡û
>C191120409
CP034158
Bacteroidota
Kaistella daneshvariae H3001 [CP034158]
217681
217768
+
Ser
GCT
-
¡û
>C191211168
LR134441
Bacteroidota
Kaistella antarctica NCTC13489 [LR134441]
121358
121271
-
Ser
GCT
-
¡û
>W141802033
JPEP01000001
Bacteroidota
Kaistella antarctica antarcticum [JPEP]
546496
546585
+
Ser
GCT
[ENA]
¡û
>W141816646
JQKA01000011
Bacteroidota
Chryseobacterium sp. OV259 [JQKA]
134105
134016
-
Ser
GCT
[ENA]
¡û
>W1910808711
MUGO01000024
Bacteroidota
Chryseobacterium piscicola DSM 21068 [MUGO]
154322
154409
+
Ser
GCT
[ENA]
¡û
>W1911139427
NOXX01000146
Bacteroidota
Flavobacterium aurantiibacter TH167 [NOXX]
22539
22626
+
Ser
GCT
[ENA]
¡û
>W1911701723
QNVS01000033
Bacteroidota
Chryseobacterium piscium CCUG 51923 [QNVS]
14068
14155
+
Ser
GCT
[ENA]
¡û
>W1911701834
QNVT01000036
Bacteroidota
Chryseobacterium pennae 1_F178 [QNVT]
561
474
-
Ser
GCT
[ENA]
¡û
>W1911702037
QNVW01000026
Bacteroidota
Chryseobacterium sp. 5_R23647 [QNVW]
50888
50975
+
Ser
GCT
[ENA]
¡û
>W1911708517
QOVY01000005
Bacteroidota
Chryseobacterium sp. SC28 [QOVY]
142561
142474
-
Ser
GCT
[ENA]
¡û
>W1810193862
PKNN01000002
Bacteroidota
Chryseobacterium scophthalmum VV8 [PKNN]
99
12
-
Ser
GCT
[ENA]
¡û
>W1511390863
JSYK01000003
Bacteroidota
Kaistella solincola DSM 22468 [JSYK]
456339
456250
-
Ser
GCT
[ENA]
¡û
>W1511432286
JUGK01000011
Bacteroidota
Chryseobacterium sp. YR005 [JUGK]
61243
61156
-
Ser
GCT
[ENA]
¡û
>W1511699522
LGIP01000022
Bacteroidota
Chryseobacterium sp. Hurlbut01 [LGIP]
40229
40316
+
Ser
GCT
[ENA]
¡û
>C121017007
FQ859183
Bacteroidota
Flavobacterium branchiophilum FL-15 [FQ859183]
1500293
1500382
+
Ser
GCT
[Ensembl]
¡û
>C161040164
CP012155
Bacteroidota
Bacteroidetes bacterium UKL13-3 [CP012155]
609377
609466
+
Ser
GCT
-
¡û
>W1610596827
LELA01000046
Bacteroidota
Chryseobacterium sp. BGARF1 [LELA]
299
212
-
Ser
GCT
[ENA]
¡û
>W1610597203
LFEG01000033
Bacteroidota
Chryseobacterium sp. MOF25P [LFEG]
14469
14556
+
Ser
GCT
[ENA]
¡û
>W1610718117
LLYZ01000012
Bacteroidota
Chryseobacterium aquaticum [LLYZ]
526
439
-
Ser
GCT
[ENA]
¡û
>W1610719823
LMAH01000002
Bacteroidota
Chryseobacterium sp. JAH [LMAH]
690985
691072
+
Ser
GCT
[ENA]
¡û
>W1610719890
LMAI01000004
Bacteroidota
Chryseobacterium aquaticum greenlandense [LMAI]
101785
101872
+
Ser
GCT
[ENA]
¡û
>W1610738958
LMPJ01000009
Bacteroidota
Chryseobacterium sp. Leaf180 [LMPJ]
279976
280063
+
Ser
GCT
[ENA]
¡û
>W1610740015
LMQH01000011
Bacteroidota
Chryseobacterium sp. Leaf394 [LMQH]
2284431
2284518
+
Ser
GCT
[ENA]
¡û
>W1610740216
LMQM01000003
Bacteroidota
Chryseobacterium sp. Leaf404 [LMQM]
99601
99688
+
Ser
GCT
[ENA]
¡û
>W1610740285
LMQN01000012
Bacteroidota
Chryseobacterium sp. Leaf405 [LMQN]
442859
442772
-
Ser
GCT
[ENA]
¡û
>W1710554951
FOIX01000002
Bacteroidota
Kaistella antarctica antarcticum [FOIX]
302845
302756
-
Ser
GCT
[ENA]
¡û
>W1710565934
FORQ01000001
Bacteroidota
Kaistella treverensis treverense [FORQ]
907396
907485
+
Ser
GCT
[ENA]
¡û
>W1710594968
FSRQ01000001
Bacteroidota
Chryseobacterium scophthalmum [FSRQ]
1551956
1552043
+
Ser
GCT
[ENA]
¡û
>W1710595915
FTMF01000023
Bacteroidota
Chryseobacterium indoltheticum [FTMF]
19857
19944
+
Ser
GCT
[ENA]
¡û
>W1710598970
FTOJ01000008
Bacteroidota
Chryseobacterium piscicola [FTOJ]
41250
41163
-
Ser
GCT
[ENA]
¡û
>W1710603581
FUZE01000005
Bacteroidota
Chryseobacterium balustinum [FUZE]
37822
37735
-
Ser
GCT
[ENA]
¡û
>W1710717832
LELA01000046
Bacteroidota
Chryseobacterium sp. BGARF1 [LELA]
299
212
-
Ser
GCT
[ENA]
¡û
>W1710718527
LFEG01000033
Bacteroidota
Chryseobacterium sp. MOF25P [LFEG]
14469
14556
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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