This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237812 (120 seq.)
>W1711943446
NBDX01000004
Bacillota
Ligilactobacillus salivarius [NBDX]
983
1056
+
Pro
TGG
[ENA]
¡û
>W1711943487
NBDY01000005
Bacillota
Ligilactobacillus salivarius [NBDY]
911
986
+
Pro
TGG
[ENA]
¡û
>W1711944069
NBEL01000004
Bacillota
Ligilactobacillus salivarius [NBEL]
987
1062
+
Pro
TGG
[ENA]
¡û
>W1711944119
NBEM01000003
Bacillota
Ligilactobacillus salivarius [NBEM]
905
980
+
Pro
TGG
[ENA]
¡û
>W1711944165
NBEN01000003
Bacillota
Ligilactobacillus salivarius [NBEN]
906
981
+
Pro
TGG
[ENA]
¡û
>W1711944259
NBEP01000026
Bacillota
Ligilactobacillus salivarius [NBEP]
22
95
+
Pro
TGG
[ENA]
¡û
>W1711944295
NBEP01000084
Bacillota
Ligilactobacillus salivarius [NBEP]
18791
18716
-
Pro
TGG
[ENA]
¡û
>W1711944314
NBEQ01000006
Bacillota
Ligilactobacillus salivarius [NBEQ]
190
265
+
Pro
TGG
[ENA]
¡û
>W1712035984
NFHF01000010
Bacillota
Ligilactobacillus salivarius [NFHF]
677
752
+
Pro
TGG
[ENA]
¡û
>W1712036009
NFHF01000035
Bacillota
Ligilactobacillus salivarius [NFHF]
519
592
+
Pro
TGG
[ENA]
¡û
>C171113778
CP020858
Bacillota
Ligilactobacillus salivarius ZLS006 [CP020858]
1608489
1608414
-
Pro
TGG
-
¡û
>C171113799
CP020858
Bacillota
Ligilactobacillus salivarius ZLS006 [CP020858]
1390299
1390226
-
Pro
TGG
-
¡û
>C171128982
LT604074
Bacillota
Ligilactobacillus salivarius [LT604074]
1101956
1102031
+
Pro
TGG
-
¡û
>C171129004
LT604074
Bacillota
Ligilactobacillus salivarius [LT604074]
1357526
1357599
+
Pro
TGG
-
¡û
>WENV181198267
OERD01005846
[OERD] metagenome; water of meat washing
198
123
-
Pro
TGG
[ENA]
¡û
>WENV181347433
OFMM01004401
[OFMM] human gut metagenome; human gut
760
833
+
Pro
TGG
[ENA]
¡û
>WENV181457063
OGEH01005650
[OGEH] metagenome; Human gut stool
1717
1642
-
Pro
TGG
[ENA]
¡û
>WENV181458006
OGEJ01000161
[OGEJ] metagenome; Human gut stool
41465
41392
-
Pro
TGG
[ENA]
¡û
>WENV181494296
OGGB01000781
[OGGB] metagenome; Human gut stool
179
254
+
Pro
TGG
[ENA]
¡û
>WENV181510782
OGGR01008103
[OGGR] metagenome; Human gut stool
212
285
+
Pro
TGG
[ENA]
¡û
>WENV181538182
OGHY01002221
[OGHY] metagenome; Human gut stool
61
134
+
Pro
TGG
[ENA]
¡û
>WENV181539126
OGHZ01001571
[OGHZ] metagenome; Human gut stool
8054
7981
-
Pro
TGG
[ENA]
¡û
>WENV181550442
OGIM01004110
[OGIM] metagenome; Human gut stool
533
460
-
Pro
TGG
[ENA]
¡û
>WENV181582143
OGKB01000598
[OGKB] metagenome; Human gut stool
645
720
+
Pro
TGG
[ENA]
¡û
>WENV182952410
OKVW01000571
[OKVW] human gut metagenome; human gut
1407
1482
+
Pro
TGG
[ENA]
¡û
>WENV183428870
OMBO01000408
[OMBO] human gut metagenome; feces
29485
29412
-
Pro
TGG
[ENA]
¡û
>WENV183789103
PPYF01379047
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1105
1030
-
Pro
TGG
[ENA]
¡û
>C181182004
CP029616
Bacillota
Ligilactobacillus salivarius DJ-sa-01 [CP029616]
1203026
1203101
+
Pro
TGG
-
¡û
>W1910649630
LXZB01000026
Bacillota
Lactobacillus salivarius KLW006 [LXZB]
292
367
+
Pro
TGG
[ENA]
¡û
>W1910649649
LXZB01000075
Bacillota
Lactobacillus salivarius KLW006 [LXZB]
487
414
-
Pro
TGG
[ENA]
¡û
>W1910649681
LXZC01000008
Bacillota
Lactobacillus salivarius KLW005 [LXZC]
24627
24702
+
Pro
TGG
[ENA]
¡û
>W1910649716
LXZC01000084
Bacillota
Lactobacillus salivarius KLW005 [LXZC]
174
247
+
Pro
TGG
[ENA]
¡û
>W1910649727
LXZD01000053
Bacillota
Lactobacillus salivarius KLW004 [LXZD]
1152
1079
-
Pro
TGG
[ENA]
¡û
>W1910649772
LXZD01000177
Bacillota
Lactobacillus salivarius KLW004 [LXZD]
593
668
+
Pro
TGG
[ENA]
¡û
>W1910649866
LXZF01000034
Bacillota
Lactobacillus salivarius KLW002 [LXZF]
18899
18824
-
Pro
TGG
[ENA]
¡û
>W1910649878
LXZF01000098
Bacillota
Lactobacillus salivarius KLW002 [LXZF]
1069
996
-
Pro
TGG
[ENA]
¡û
>W1910650004
LXZK01000004
Bacillota
Lactobacillus salivarius KLF004 [LXZK]
483
410
-
Pro
TGG
[ENA]
¡û
>W1910650037
LXZK01000042
Bacillota
Lactobacillus salivarius KLF004 [LXZK]
549
624
+
Pro
TGG
[ENA]
¡û
>W1910650077
LXZL01000054
Bacillota
Lactobacillus salivarius KLF003 [LXZL]
18902
18827
-
Pro
TGG
[ENA]
¡û
>W1910650087
LXZL01000092
Bacillota
Lactobacillus salivarius KLF003 [LXZL]
6990
6917
-
Pro
TGG
[ENA]
¡û
>W1910650167
LXZO01000068
Bacillota
Lactobacillus salivarius KLA006 [LXZO]
483
410
-
Pro
TGG
[ENA]
¡û
>W1910650200
LXZO01000098
Bacillota
Lactobacillus salivarius KLA006 [LXZO]
23088
23013
-
Pro
TGG
[ENA]
¡û
>W1910650271
LXZQ01000008
Bacillota
Lactobacillus salivarius KLA004 [LXZQ]
487
414
-
Pro
TGG
[ENA]
¡û
>W1910650312
LXZQ01000043
Bacillota
Lactobacillus salivarius KLA004 [LXZQ]
23088
23013
-
Pro
TGG
[ENA]
¡û
>W1910650346
LXZR01000034
Bacillota
Lactobacillus salivarius KLA003 [LXZR]
189
262
+
Pro
TGG
[ENA]
¡û
>W1910650368
LXZR01000041
Bacillota
Lactobacillus salivarius KLA003 [LXZR]
23090
23015
-
Pro
TGG
[ENA]
¡û
>W1910650489
LXZT01000041
Bacillota
Lactobacillus salivarius KLA001 [LXZT]
23090
23015
-
Pro
TGG
[ENA]
¡û
>W1910650501
LXZT01000103
Bacillota
Lactobacillus salivarius KLA001 [LXZT]
485
412
-
Pro
TGG
[ENA]
¡û
>W1910871491
NCXD01000036
Bacillota
Lactobacillus kefiri KR [NCXD]
8973
9047
+
Pro
TGG
[ENA]
¡û
>W1910871515
NCXD01000078
Bacillota
Lactobacillus kefiri KR [NCXD]
605
680
+
Pro
TGG
[ENA]
¡û
>W1911570203
PCZH01000035
Bacillota
Lactobacillus sp. UMNPBX2 [PCZH]
19295
19222
-
Pro
TGG
[ENA]
¡û
>W1810185979
PKGN01000034
Bacillota
Ligilactobacillus salivarius 290 [PKGN]
320
395
+
Pro
TGG
[ENA]
¡û
>W1810586549
QFFL01000001
Bacillota
Lentilactobacillus kefiri SGL 13 [QFFL]
2181506
2181581
+
Pro
TGG
[ENA]
¡û
>W1810586577
QFFL01000001
Bacillota
Lentilactobacillus kefiri SGL 13 [QFFL]
835500
835426
-
Pro
TGG
[ENA]
¡û
>W1810829791
QSLH01000003
Bacillota
Ligilactobacillus salivarius AM25-8 [QSLH]
330
405
+
Pro
TGG
[ENA]
¡û
>C151030902
CP007646
Bacillota
Ligilactobacillus salivarius JCM1046 [CP007646]
246132
246207
+
Pro
TGG
[Ensembl]
¡û
>C151030924
CP007646
Bacillota
Ligilactobacillus salivarius JCM1046 [CP007646]
469468
469541
+
Pro
TGG
[Ensembl]
¡û
>W2010100441
BJVK01000004
Bacillota
Lactobacillus kefiri NBRC 15888 [BJVK]
106229
106155
-
Pro
TGG
[ENA]
¡û
>W2010100472
BJVK01000104
Bacillota
Lactobacillus kefiri NBRC 15888 [BJVK]
448
523
+
Pro
TGG
[ENA]
¡û
>W2010489946
JAAJBN010000003
Bacillota
Lactobacillus salivarius VA40-10 [JAAJBN]
3712
3785
+
Pro
TGG
[ENA]
¡û
>W2010489965
JAAJBN010000006
Bacillota
Lactobacillus salivarius VA40-10 [JAAJBN]
426
501
+
Pro
TGG
[ENA]
¡û
>W2010795177
LXZB01000026
Bacillota
Lactobacillus salivarius KLW006 [LXZB]
292
367
+
Pro
TGG
[ENA]
¡û
>W2010795196
LXZB01000075
Bacillota
Lactobacillus salivarius KLW006 [LXZB]
487
414
-
Pro
TGG
[ENA]
¡û
>W2010795228
LXZC01000008
Bacillota
Lactobacillus salivarius KLW005 [LXZC]
24627
24702
+
Pro
TGG
[ENA]
¡û
>W2010795263
LXZC01000084
Bacillota
Lactobacillus salivarius KLW005 [LXZC]
174
247
+
Pro
TGG
[ENA]
¡û
>W2010795413
LXZF01000034
Bacillota
Lactobacillus salivarius KLW002 [LXZF]
18899
18824
-
Pro
TGG
[ENA]
¡û
>W2010795425
LXZF01000098
Bacillota
Lactobacillus salivarius KLW002 [LXZF]
1069
996
-
Pro
TGG
[ENA]
¡û
>W2010795551
LXZK01000004
Bacillota
Lactobacillus salivarius KLF004 [LXZK]
483
410
-
Pro
TGG
[ENA]
¡û
>W2010795584
LXZK01000042
Bacillota
Lactobacillus salivarius KLF004 [LXZK]
549
624
+
Pro
TGG
[ENA]
¡û
>W2010795714
LXZO01000068
Bacillota
Lactobacillus salivarius KLA006 [LXZO]
483
410
-
Pro
TGG
[ENA]
¡û
>W2010795747
LXZO01000098
Bacillota
Lactobacillus salivarius KLA006 [LXZO]
23088
23013
-
Pro
TGG
[ENA]
¡û
>W2010795818
LXZQ01000008
Bacillota
Lactobacillus salivarius KLA004 [LXZQ]
487
414
-
Pro
TGG
[ENA]
¡û
>W2010795859
LXZQ01000043
Bacillota
Lactobacillus salivarius KLA004 [LXZQ]
23088
23013
-
Pro
TGG
[ENA]
¡û
>W2010795893
LXZR01000034
Bacillota
Lactobacillus salivarius KLA003 [LXZR]
189
262
+
Pro
TGG
[ENA]
¡û
>W2010795915
LXZR01000041
Bacillota
Lactobacillus salivarius KLA003 [LXZR]
23090
23015
-
Pro
TGG
[ENA]
¡û
>W2010796036
LXZT01000041
Bacillota
Lactobacillus salivarius KLA001 [LXZT]
23090
23015
-
Pro
TGG
[ENA]
¡û
>W2010796048
LXZT01000103
Bacillota
Lactobacillus salivarius KLA001 [LXZT]
485
412
-
Pro
TGG
[ENA]
¡û
>W2010940221
NCXD01000036
Bacillota
Lactobacillus kefiri KR [NCXD]
8973
9047
+
Pro
TGG
[ENA]
¡û
>W2010940245
NCXD01000078
Bacillota
Lactobacillus kefiri KR [NCXD]
605
680
+
Pro
TGG
[ENA]
¡û
>W2011182350
PCZH01000035
Bacillota
Lactobacillus sp. UMNPBX2 [PCZH]
19295
19222
-
Pro
TGG
[ENA]
¡û
>W2011976483
VCMO01000008
Bacillota
Lactobacillus salivarius C2 [VCMO]
72597
72522
-
Pro
TGG
[ENA]
¡û
>W2011976508
VCMO01000028
Bacillota
Lactobacillus salivarius C2 [VCMO]
519
446
-
Pro
TGG
[ENA]
¡û
>W2012133359
VSTR01000008
Bacillota
Lactobacillus salivarius FZJTZ9M6.scaf [VSTR]
79267
79192
-
Pro
TGG
[ENA]
¡û
>W2012133367
VSTR01000013
Bacillota
Lactobacillus salivarius FZJTZ9M6.scaf [VSTR]
838
911
+
Pro
TGG
[ENA]
¡û
>W2012133494
VSTU01000021
Bacillota
Lactobacillus salivarius FZJTZ28M4.scaf [VSTU]
273
348
+
Pro
TGG
[ENA]
¡û
>W2012133503
VSTU01000042
Bacillota
Lactobacillus salivarius FZJTZ28M4.scaf [VSTU]
279
352
+
Pro
TGG
[ENA]
¡û
>W2012133987
VSUE01000001
Bacillota
Lactobacillus salivarius FXJWS41_2.scaf [VSUE]
443900
443827
-
Pro
TGG
[ENA]
¡û
>W2012134017
VSUE01000003
Bacillota
Lactobacillus salivarius FXJWS41_2.scaf [VSUE]
161094
161019
-
Pro
TGG
[ENA]
¡û
>W2012134183
VSUI01000001
Bacillota
Lactobacillus salivarius FXJKS17M7 [VSUI]
404682
404609
-
Pro
TGG
[ENA]
¡û
>W2012134824
VSUX01000008
Bacillota
Lactobacillus salivarius FNXYC6M7 [VSUX]
97934
97861
-
Pro
TGG
[ENA]
¡û
>W2012134884
VSUZ01000004
Bacillota
Lactobacillus salivarius FNMGHLBE2_L7 [VSUZ]
154563
154488
-
Pro
TGG
[ENA]
¡û
>W2012134900
VSUZ01000025
Bacillota
Lactobacillus salivarius FNMGHLBE2_L7 [VSUZ]
629
556
-
Pro
TGG
[ENA]
¡û
>W2012134948
VSVB01000001
Bacillota
Lactobacillus salivarius FNMGHLBE11_L1_2 [VSVB]
443078
443005
-
Pro
TGG
[ENA]
¡û
>W2012134991
VSVC01000004
Bacillota
Lactobacillus salivarius FJSWX_34J_L5 [VSVC]
431
504
+
Pro
TGG
[ENA]
¡û
>W2012135031
VSVD01000007
Bacillota
Lactobacillus salivarius FJSWX10_2 [VSVD]
32
107
+
Pro
TGG
[ENA]
¡û
>W2012135054
VSVE01000004
Bacillota
Lactobacillus salivarius FJLHD9M1 [VSVE]
30
105
+
Pro
TGG
[ENA]
¡û
>W2012135158
VSVH01000026
Bacillota
Lactobacillus salivarius FJLHD32M4 [VSVH]
421
494
+
Pro
TGG
[ENA]
¡û
>W2012135232
VSVJ01000012
Bacillota
Lactobacillus salivarius FJLHD27M4 [VSVJ]
63064
62989
-
Pro
TGG
[ENA]
¡û
>W2012135257
VSVK01000008
Bacillota
Lactobacillus salivarius FJLHD25M7 [VSVK]
421
494
+
Pro
TGG
[ENA]
¡û
>W2012135417
VSVP01000001
Bacillota
Lactobacillus salivarius FJLHD10M2 [VSVP]
441
514
+
Pro
TGG
[ENA]
¡û
>W2012135545
VSVS01000027
Bacillota
Lactobacillus salivarius FGSYC47M10 [VSVS]
34
109
+
Pro
TGG
[ENA]
¡û
>W2012135796
VSVY01000021
Bacillota
Lactobacillus salivarius FBJSY20_2 [VSVY]
1270
1345
+
Pro
TGG
[ENA]
¡û
>W2012358785
WKKZ01000159
Bacillota
Lactobacillus salivarius VRA_1sq_f [WKKZ]
591
666
+
Pro
TGG
[ENA]
¡û
>C211156963
CP062071
Bacillota
Ligilactobacillus salivarius ZLp4b [CP062071]
274492
274567
+
Pro
TGG
-
¡û
>C211156985
CP062071
Bacillota
Ligilactobacillus salivarius ZLp4b [CP062071]
547113
547186
+
Pro
TGG
-
¡û
>C231496865
CP104732
Bacillota
Ligilactobacillus salivarius H1 [CP104732]
246668
246743
+
Pro
TGG
-
¡û
>C231496887
CP104732
Bacillota
Ligilactobacillus salivarius H1 [CP104732]
570522
570595
+
Pro
TGG
-
¡û
>C241222021
CP114509
Bacillota
Ligilactobacillus salivarius S35 [CP114509]
1599836
1599761
-
Pro
TGG
-
¡û
>C241222043
CP114509
Bacillota
Ligilactobacillus salivarius S35 [CP114509]
1338431
1338358
-
Pro
TGG
-
¡û
>W2310019528
BRPL01000002
Bacillota
Philodulcilactobacillus myokoensis WR16-4 [BRPL]
549849
549924
+
Pro
TGG
[ENA]
¡û
>W2310019557
BRPL01000002
Bacillota
Philodulcilactobacillus myokoensis WR16-4 [BRPL]
1000634
1000561
-
Pro
TGG
[ENA]
¡û
>W1511443819
JUTI01000040
Bacillota
Ligilactobacillus salivarius 778_LSAL [JUTI]
247
320
+
Pro
TGG
[ENA]
¡û
>W11167254
AFMN01000001
Bacillota
Ligilactobacillus salivarius NIAS840 [AFMN]
122044
121969
-
Pro
TGG
[ENA]
¡û
>W1610031405
AYYT01000008
Bacillota
Ligilactobacillus salivarius DSM 20555 = ATCC 11741 [AYYT]
71860
71785
-
Pro
TGG
[ENA]
¡û
>W1610035524
AZEN01000421
Bacillota
Lentilactobacillus parakefiri DSM 10551 [AZEN]
21845
21919
+
Pro
TGG
[ENA]
¡û
>W1610045774
BBBV01000007
Bacillota
Lentilactobacillus kefiri DSM 20587 = JCM 5818 [BBBV]
75689
75615
-
Pro
TGG
[ENA]
¡û
>W1610045804
BBBV01000103
Bacillota
Lentilactobacillus kefiri DSM 20587 = JCM 5818 [BBBV]
527
602
+
Pro
TGG
[ENA]
¡û
>W1710032563
AZEN01000421
Bacillota
Lentilactobacillus parakefiri DSM 10551 [AZEN]
21845
21919
+
Pro
TGG
[ENA]
¡û
>W1710042615
BBBV01000007
Bacillota
Lentilactobacillus kefiri DSM 20587 = JCM 5818 [BBBV]
75689
75615
-
Pro
TGG
[ENA]
¡û
>W1710042645
BBBV01000103
Bacillota
Lentilactobacillus kefiri DSM 20587 = JCM 5818 [BBBV]
527
602
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK